MGE detailed information
MGE type: Prophage MGE length: 54208 bp
Accession: NZ_CP118148 Location: 6486828..6541035 Organism: Pseudomonas chlororaphis strain NCCB 880622 Replicon: chromosome
Accession: NZ_CP118148 Location: 6486828..6541035 Organism: Pseudomonas chlororaphis strain NCCB 880622 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUP58_RS29385 (PUP58_29385) | 6484529..6485845 | + | 1317 | WP_036985516.1 | peptidylprolyl isomerase SurA | - |
| PUP58_RS29390 (PUP58_29390) | 6485842..6486831 | + | 990 | WP_041984687.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
| PUP58_RS29395 (PUP58_29395) | 6486828..6487646 | + | 819 | WP_009051161.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| PUP58_RS29400 (PUP58_29400) | 6487769..6488149 | + | 381 | WP_007926128.1 | Co2+/Mg2+ efflux protein ApaG | - |
| PUP58_RS29405 (PUP58_29405) | 6488149..6489030 | + | 882 | WP_041984691.1 | symmetrical bis(5'-nucleosyl)-tetraphosphatase | - |
| PUP58_RS29410 (PUP58_29410) | 6489063..6489392 | + | 330 | WP_041984693.1 | thiosulfate sulfurtransferase GlpE | - |
| PUP58_RS29415 (PUP58_29415) | 6489688..6491610 | + | 1923 | WP_007926124.1 | PrkA family serine protein kinase | - |
| PUP58_RS29420 (PUP58_29420) | 6491799..6493070 | + | 1272 | WP_009051164.1 | YeaH/YhbH family protein | - |
| PUP58_RS29425 (PUP58_29425) | 6493067..6494629 | + | 1563 | WP_009051165.1 | SpoVR family protein | - |
| PUP58_RS29430 (PUP58_29430) | 6494694..6495923 | + | 1230 | WP_009051166.1 | multifunctional CCA addition/repair protein | - |
| PUP58_RS29435 (PUP58_29435) | 6496006..6496524 | - | 519 | WP_009051167.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| PUP58_RS29440 (PUP58_29440) | 6496515..6496868 | - | 354 | WP_007926118.1 | dihydroneopterin aldolase | - |
| PUP58_RS29445 (PUP58_29445) | 6496943..6497512 | + | 570 | WP_009051169.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| PUP58_RS29450 (PUP58_29450) | 6497554..6498579 | - | 1026 | WP_009045890.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| PUP58_RS29455 (PUP58_29455) | 6498780..6498995 | + | 216 | WP_002551877.1 | 30S ribosomal protein S21 | - |
| PUP58_RS29460 (PUP58_29460) | 6499465..6501429 | + | 1965 | WP_041984697.1 | DNA primase | - |
| PUP58_RS29465 (PUP58_29465) | 6501497..6503344 | + | 1848 | WP_007926106.1 | RNA polymerase sigma factor RpoD | - |
| PUP58_RS29470 (PUP58_29470) | 6503467..6507210 | + | 3744 | WP_009051172.1 | Membrane-bound lytic murein transglycosylase F | VF |
| PUP58_RS29480 (PUP58_29480) | 6507351..6508415 | - | 1065 | WP_041984703.1 | IS91 family transposase ISTha3 | Transposase |
| PUP58_RS29485 (PUP58_29485) | 6508418..6508654 | - | 237 | WP_041984705.1 | helix-turn-helix transcriptional regulator | - |
| PUP58_RS29490 (PUP58_29490) | 6508747..6508983 | + | 237 | WP_041984708.1 | hypothetical protein | - |
| PUP58_RS29495 (PUP58_29495) | 6508984..6511674 | + | 2691 | WP_231999305.1 | toprim domain-containing protein | - |
| PUP58_RS29500 (PUP58_29500) | 6512143..6512436 | + | 294 | WP_124355756.1 | hypothetical protein | - |
| PUP58_RS29505 (PUP58_29505) | 6512447..6512698 | + | 252 | WP_041984712.1 | hypothetical protein | - |
| PUP58_RS29510 (PUP58_29510) | 6512761..6513051 | + | 291 | WP_041985161.1 | hypothetical protein | - |
| PUP58_RS29515 (PUP58_29515) | 6513044..6513283 | + | 240 | WP_041984715.1 | Arc family DNA-binding protein | - |
| PUP58_RS29520 (PUP58_29520) | 6513277..6513525 | + | 249 | WP_041984717.1 | hypothetical protein | - |
| PUP58_RS29525 (PUP58_29525) | 6514313..6514576 | - | 264 | WP_041984720.1 | ogr/Delta-like zinc finger family protein | - |
| PUP58_RS29530 (PUP58_29530) | 6514657..6515523 | - | 867 | WP_052443044.1 | phage portal protein | - |
| PUP58_RS29535 (PUP58_29535) | 6515435..6517498 | - | 2064 | WP_052443037.1 | terminase family protein | - |
| PUP58_RS29540 (PUP58_29540) | 6517662..6518582 | + | 921 | WP_041984726.1 | GPO family capsid scaffolding protein | - |
| PUP58_RS29545 (PUP58_29545) | 6518584..6519606 | + | 1023 | WP_041984731.1 | phage major capsid protein, P2 family | - |
| PUP58_RS29550 (PUP58_29550) | 6519603..6520325 | + | 723 | WP_041984734.1 | phage terminase small subunit | - |
| PUP58_RS29555 (PUP58_29555) | 6520424..6520885 | + | 462 | WP_041984736.1 | head completion/stabilization protein | - |
| PUP58_RS29560 (PUP58_29560) | 6520882..6521355 | + | 474 | WP_041984738.1 | hypothetical protein | - |
| PUP58_RS29565 (PUP58_29565) | 6521352..6521804 | + | 453 | WP_041984741.1 | phage tail protein | - |
| PUP58_RS29570 (PUP58_29570) | 6521791..6522471 | + | 681 | WP_041984743.1 | virion morphogenesis protein | - |
| PUP58_RS29575 (PUP58_29575) | 6522483..6523598 | + | 1116 | WP_041984745.1 | DUF2586 domain-containing protein | - |
| PUP58_RS29580 (PUP58_29580) | 6523606..6524055 | + | 450 | WP_041984748.1 | DUF2597 family protein | - |
| PUP58_RS29585 (PUP58_29585) | 6524055..6524267 | + | 213 | WP_028681546.1 | TraR/DksA C4-type zinc finger protein | - |
| PUP58_RS29590 (PUP58_29590) | 6524363..6524617 | + | 255 | WP_041984753.1 | hypothetical protein | - |
| PUP58_RS29595 (PUP58_29595) | 6524614..6525147 | + | 534 | WP_041984756.1 | lysozyme | - |
| PUP58_RS29600 (PUP58_29600) | 6525144..6525647 | + | 504 | WP_052443038.1 | lysis protein | - |
| PUP58_RS29605 (PUP58_29605) | 6525644..6525934 | + | 291 | WP_041984758.1 | putative phage tail assembly chaperone | - |
| PUP58_RS29610 (PUP58_29610) | 6526103..6528088 | + | 1986 | WP_041984759.1 | phage tail tape measure protein | - |
| PUP58_RS29615 (PUP58_29615) | 6528085..6528402 | + | 318 | WP_041984762.1 | DUF2590 family protein | - |
| PUP58_RS29620 (PUP58_29620) | 6528399..6529574 | + | 1176 | WP_041984765.1 | baseplate J/gp47 family protein | - |
| PUP58_RS29625 (PUP58_29625) | 6529571..6530095 | + | 525 | WP_028681539.1 | phage tail protein | - |
| PUP58_RS29630 (PUP58_29630) | 6530105..6531790 | + | 1686 | WP_041984768.1 | phage tail protein | - |
| PUP58_RS29635 (PUP58_29635) | 6531799..6532506 | + | 708 | WP_041984770.1 | hypothetical protein | - |
| PUP58_RS29640 (PUP58_29640) | 6532503..6533426 | + | 924 | WP_041984773.1 | hypothetical protein | - |
| PUP58_RS29645 (PUP58_29645) | 6533423..6533971 | + | 549 | WP_041984775.1 | hypothetical protein | - |
| PUP58_RS29650 (PUP58_29650) | 6533968..6534672 | + | 705 | WP_041984777.1 | hypothetical protein | - |
| PUP58_RS29655 (PUP58_29655) | 6534645..6535616 | + | 972 | WP_041984780.1 | hypothetical protein | - |
| PUP58_RS29660 (PUP58_29660) | 6535613..6536254 | - | 642 | WP_041985169.1 | hypothetical protein | - |
| PUP58_RS29665 (PUP58_29665) | 6536480..6536662 | + | 183 | WP_028681531.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| PUP58_RS29670 (PUP58_29670) | 6536695..6537120 | + | 426 | WP_041984783.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| PUP58_RS29675 (PUP58_29675) | 6537297..6537944 | - | 648 | WP_124355757.1 | hypothetical protein | - |
| PUP58_RS29680 (PUP58_29680) | 6538786..6538995 | + | 210 | WP_124355758.1 | hypothetical protein | - |
| PUP58_RS29685 (PUP58_29685) | 6540232..6541035 | + | 804 | WP_274319129.1 | lipopolysaccharide biosynthesis protein | - |
| PUP58_RS29690 (PUP58_29690) | 6541121..6543475 | - | 2355 | WP_041984790.1 | glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase | - |
| PUP58_RS29695 (PUP58_29695) | 6543690..6544151 | + | 462 | WP_009051175.1 | Lrp/AsnC family transcriptional regulator | - |
| PUP58_RS29700 (PUP58_29700) | 6544334..6546031 | + | 1698 | WP_041984792.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|