MGE detailed information
MGE type: Prophage MGE length: 49931 bp
Accession: NZ_CP118136 Location: 6545794..6595724 Organism: Pseudomonas chlororaphis strain NCCB 60038 Replicon: chromosome
Accession: NZ_CP118136 Location: 6545794..6595724 Organism: Pseudomonas chlororaphis strain NCCB 60038 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUP52_RS29785 (PUP52_29785) | 6541948..6542937 | + | 990 | WP_041984687.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
| PUP52_RS29790 (PUP52_29790) | 6542934..6543752 | + | 819 | WP_009051161.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| PUP52_RS29795 (PUP52_29795) | 6543875..6544255 | + | 381 | WP_041984689.1 | Co2+/Mg2+ efflux protein ApaG | - |
| PUP52_RS29800 (PUP52_29800) | 6544255..6545136 | + | 882 | WP_041984691.1 | symmetrical bis(5'-nucleosyl)-tetraphosphatase | - |
| PUP52_RS29805 (PUP52_29805) | 6545169..6545498 | + | 330 | WP_041984693.1 | thiosulfate sulfurtransferase GlpE | - |
| PUP52_RS29810 (PUP52_29810) | 6545794..6547716 | + | 1923 | WP_007926124.1 | PrkA family serine protein kinase | - |
| PUP52_RS29815 (PUP52_29815) | 6547905..6549176 | + | 1272 | WP_009051164.1 | YeaH/YhbH family protein | - |
| PUP52_RS29820 (PUP52_29820) | 6549173..6550735 | + | 1563 | WP_009051165.1 | SpoVR family protein | - |
| PUP52_RS29825 (PUP52_29825) | 6550800..6552029 | + | 1230 | WP_009051166.1 | multifunctional CCA addition/repair protein | - |
| PUP52_RS29830 (PUP52_29830) | 6552112..6552630 | - | 519 | WP_009051167.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| PUP52_RS29835 (PUP52_29835) | 6552621..6552974 | - | 354 | WP_007926118.1 | dihydroneopterin aldolase | - |
| PUP52_RS29840 (PUP52_29840) | 6553049..6553618 | + | 570 | WP_009051169.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| PUP52_RS29845 (PUP52_29845) | 6553660..6554685 | - | 1026 | WP_009045890.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| PUP52_RS29850 (PUP52_29850) | 6554886..6555101 | + | 216 | WP_002551877.1 | 30S ribosomal protein S21 | - |
| PUP52_RS29855 (PUP52_29855) | 6555571..6557535 | + | 1965 | WP_041984697.1 | DNA primase | - |
| PUP52_RS29860 (PUP52_29860) | 6557603..6559450 | + | 1848 | WP_007926106.1 | RNA polymerase sigma factor RpoD | - |
| PUP52_RS29865 (PUP52_29865) | 6559573..6563316 | + | 3744 | WP_009051172.1 | hypothetical protein | VF |
| PUP52_RS29875 (PUP52_29875) | 6563457..6564521 | - | 1065 | WP_041984703.1 | IS91 family transposase ISTha3 | Transposase |
| PUP52_RS29880 (PUP52_29880) | 6564524..6564760 | - | 237 | WP_041984705.1 | helix-turn-helix transcriptional regulator | - |
| PUP52_RS29885 (PUP52_29885) | 6564853..6565089 | + | 237 | WP_041984708.1 | hypothetical protein | - |
| PUP52_RS29890 (PUP52_29890) | 6565090..6567780 | + | 2691 | WP_231999305.1 | toprim domain-containing protein | - |
| PUP52_RS29895 (PUP52_29895) | 6568249..6568542 | + | 294 | WP_124355756.1 | hypothetical protein | - |
| PUP52_RS29900 (PUP52_29900) | 6568553..6568804 | + | 252 | WP_041984712.1 | hypothetical protein | - |
| PUP52_RS29905 (PUP52_29905) | 6568867..6569157 | + | 291 | WP_041985161.1 | hypothetical protein | - |
| PUP52_RS29910 (PUP52_29910) | 6569150..6569389 | + | 240 | WP_041984715.1 | Arc family DNA-binding protein | - |
| PUP52_RS29915 (PUP52_29915) | 6569383..6569631 | + | 249 | WP_041984717.1 | hypothetical protein | - |
| PUP52_RS29920 (PUP52_29920) | 6570419..6570682 | - | 264 | WP_041984720.1 | ogr/Delta-like zinc finger family protein | - |
| PUP52_RS29925 (PUP52_29925) | 6570763..6571629 | - | 867 | WP_052443044.1 | phage portal protein | - |
| PUP52_RS29930 (PUP52_29930) | 6571541..6573604 | - | 2064 | WP_052443037.1 | terminase family protein | - |
| PUP52_RS29935 (PUP52_29935) | 6573768..6574688 | + | 921 | WP_041984726.1 | GPO family capsid scaffolding protein | - |
| PUP52_RS29940 (PUP52_29940) | 6574690..6575712 | + | 1023 | WP_041984731.1 | phage major capsid protein, P2 family | - |
| PUP52_RS29945 (PUP52_29945) | 6575709..6576431 | + | 723 | WP_041984734.1 | phage terminase small subunit | - |
| PUP52_RS29950 (PUP52_29950) | 6576530..6576991 | + | 462 | WP_041984736.1 | head completion/stabilization protein | - |
| PUP52_RS29955 (PUP52_29955) | 6576988..6577461 | + | 474 | WP_041984738.1 | hypothetical protein | - |
| PUP52_RS29960 (PUP52_29960) | 6577458..6577910 | + | 453 | WP_041984741.1 | phage tail protein | - |
| PUP52_RS29965 (PUP52_29965) | 6577897..6578577 | + | 681 | WP_041984743.1 | virion morphogenesis protein | - |
| PUP52_RS29970 (PUP52_29970) | 6578589..6579704 | + | 1116 | WP_041984745.1 | DUF2586 domain-containing protein | - |
| PUP52_RS29975 (PUP52_29975) | 6579712..6580161 | + | 450 | WP_041984748.1 | DUF2597 family protein | - |
| PUP52_RS29980 (PUP52_29980) | 6580161..6580373 | + | 213 | WP_028681546.1 | TraR/DksA C4-type zinc finger protein | - |
| PUP52_RS29985 (PUP52_29985) | 6580469..6580723 | + | 255 | WP_041984753.1 | hypothetical protein | - |
| PUP52_RS29990 (PUP52_29990) | 6580720..6581253 | + | 534 | WP_041984756.1 | lysozyme | - |
| PUP52_RS29995 (PUP52_29995) | 6581250..6581753 | + | 504 | WP_052443038.1 | lysis protein | - |
| PUP52_RS30000 (PUP52_30000) | 6581750..6582040 | + | 291 | WP_041984758.1 | putative phage tail assembly chaperone | - |
| PUP52_RS30005 (PUP52_30005) | 6582209..6584194 | + | 1986 | WP_041984759.1 | phage tail tape measure protein | - |
| PUP52_RS30010 (PUP52_30010) | 6584191..6584508 | + | 318 | WP_041984762.1 | DUF2590 family protein | - |
| PUP52_RS30015 (PUP52_30015) | 6584505..6585680 | + | 1176 | WP_041984765.1 | baseplate J/gp47 family protein | - |
| PUP52_RS30020 (PUP52_30020) | 6585677..6586201 | + | 525 | WP_028681539.1 | phage tail protein | - |
| PUP52_RS30025 (PUP52_30025) | 6586211..6587896 | + | 1686 | WP_041984768.1 | phage tail protein | - |
| PUP52_RS30030 (PUP52_30030) | 6587905..6588612 | + | 708 | WP_041984770.1 | hypothetical protein | - |
| PUP52_RS30035 (PUP52_30035) | 6588609..6589532 | + | 924 | WP_041984773.1 | hypothetical protein | - |
| PUP52_RS30040 (PUP52_30040) | 6589529..6590077 | + | 549 | WP_041984775.1 | hypothetical protein | - |
| PUP52_RS30045 (PUP52_30045) | 6590074..6590778 | + | 705 | WP_041984777.1 | hypothetical protein | - |
| PUP52_RS30050 (PUP52_30050) | 6590751..6591722 | + | 972 | WP_041984780.1 | hypothetical protein | - |
| PUP52_RS30055 (PUP52_30055) | 6591719..6592360 | - | 642 | WP_041985169.1 | hypothetical protein | - |
| PUP52_RS30060 (PUP52_30060) | 6592586..6592768 | + | 183 | WP_028681531.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| PUP52_RS30065 (PUP52_30065) | 6592801..6593226 | + | 426 | WP_041984783.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| PUP52_RS30070 (PUP52_30070) | 6593403..6594050 | - | 648 | WP_124355757.1 | hypothetical protein | - |
| PUP52_RS30075 (PUP52_30075) | 6594892..6595101 | + | 210 | WP_124355758.1 | hypothetical protein | - |
| PUP52_RS30080 (PUP52_30080) | 6596338..6597141 | + | 804 | WP_080768765.1 | lipopolysaccharide biosynthesis protein | - |
| PUP52_RS30085 (PUP52_30085) | 6597227..6599581 | - | 2355 | WP_041984790.1 | glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase | - |
| PUP52_RS30090 (PUP52_30090) | 6599796..6600257 | + | 462 | WP_009051175.1 | Lrp/AsnC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|