MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 70987 bp
Accession: NZ_CP118050 Location: 2523247..2594233 Organism: Lacticaseibacillus rhamnosus strain VSI43 Replicon: chromosome
Accession: NZ_CP118050 Location: 2523247..2594233 Organism: Lacticaseibacillus rhamnosus strain VSI43 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUW66_RS11650 (PUW66_11650) | 2520305..2520862 | - | 558 | WP_005691240.1 | aminoacyl-tRNA hydrolase | - |
| PUW66_RS11655 (PUW66_11655) | 2521296..2522303 | + | 1008 | WP_003662706.1 | L-lactate dehydrogenase | - |
| PUW66_RS11660 (PUW66_11660) | 2522711..2524081 | + | 1371 | WP_014571603.1 | L,D-transpeptidase family protein | - |
| PUW66_RS11665 (PUW66_11665) | 2524210..2524746 | - | 537 | WP_005691234.1 | PadR family transcriptional regulator | - |
| PUW66_RS11670 (PUW66_11670) | 2524893..2526344 | + | 1452 | WP_005691232.1 | hypothetical protein | VF |
| PUW66_RS11675 (PUW66_11675) | 2526408..2527004 | + | 597 | WP_005691229.1 | NAD(P)H-dependent oxidoreductase | - |
| PUW66_RS11680 (PUW66_11680) | 2527173..2527838 | + | 666 | WP_005686626.1 | cyclic di-AMP binding protein CbpA | - |
| PUW66_RS11685 (PUW66_11685) | 2528135..2528833 | + | 699 | WP_014571605.1 | L,D-transpeptidase | - |
| PUW66_RS11690 (PUW66_11690) | 2528913..2530349 | - | 1437 | WP_015764731.1 | glutamate synthase subunit beta | - |
| PUW66_RS11695 (PUW66_11695) | 2530414..2534880 | - | 4467 | WP_005691223.1 | glutamate synthase large subunit | - |
| PUW66_RS11700 (PUW66_11700) | 2535176..2535703 | - | 528 | WP_049152640.1 | QueT transporter family protein | - |
| PUW66_RS11705 (PUW66_11705) | 2536114..2536497 | - | 384 | WP_005686631.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| PUW66_RS11710 (PUW66_11710) | 2536517..2536765 | - | 249 | WP_005686632.1 | antitoxin | Antitoxin Detail |
| PUW66_RS11715 (PUW66_11715) | 2536877..2538016 | - | 1140 | WP_005691215.1 | alanine racemase | - |
| PUW66_RS11720 (PUW66_11720) | 2538003..2538377 | - | 375 | WP_005686634.1 | holo-ACP synthase | - |
| PUW66_RS11725 (PUW66_11725) | 2538546..2540054 | - | 1509 | WP_005686635.1 | DEAD/DEAH box helicase | - |
| PUW66_RS11730 (PUW66_11730) | 2540328..2541716 | - | 1389 | WP_014571607.1 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase | - |
| PUW66_RS11735 (PUW66_11735) | 2541863..2542627 | - | 765 | WP_005691211.1 | hypothetical protein | - |
| PUW66_RS11740 (PUW66_11740) | 2542829..2543470 | + | 642 | WP_275016716.1 | SMI1/KNR4 family protein | - |
| PUW66_RS11745 (PUW66_11745) | 2543486..2544160 | - | 675 | WP_014571608.1 | hypothetical protein | - |
| PUW66_RS11750 (PUW66_11750) | 2544416..2544844 | + | 429 | WP_005691206.1 | hypothetical protein | - |
| PUW66_RS11755 (PUW66_11755) | 2545844..2547466 | + | 1623 | Protein_2274 | hypothetical protein | VF |
| PUW66_RS11760 (PUW66_11760) | 2547856..2549412 | + | 1557 | WP_275016720.1 | SpaA isopeptide-forming pilin-related protein | - |
| PUW66_RS11765 (PUW66_11765) | 2549414..2549656 | + | 243 | WP_016387573.1 | hypothetical protein | - |
| PUW66_RS11770 (PUW66_11770) | 2549698..2550021 | + | 324 | WP_049152641.1 | DUF961 family protein | - |
| PUW66_RS11775 (PUW66_11775) | 2550039..2550410 | + | 372 | WP_010491213.1 | YdcP family protein | - |
| PUW66_RS11780 (PUW66_11780) | 2550488..2550751 | + | 264 | WP_016387575.1 | hypothetical protein | - |
| PUW66_RS11785 (PUW66_11785) | 2550756..2551001 | + | 246 | WP_225360076.1 | hypothetical protein | - |
| PUW66_RS11790 (PUW66_11790) | 2551036..2551284 | + | 249 | WP_010491207.1 | hypothetical protein | - |
| PUW66_RS11795 (PUW66_11795) | 2551304..2551591 | + | 288 | WP_016376177.1 | hypothetical protein | - |
| PUW66_RS11800 (PUW66_11800) | 2551588..2552955 | + | 1368 | WP_049152643.1 | FtsK/SpoIIIE domain-containing protein | - |
| PUW66_RS11805 (PUW66_11805) | 2553067..2553240 | + | 174 | WP_016376180.1 | hypothetical protein | - |
| PUW66_RS11810 (PUW66_11810) | 2553237..2553497 | + | 261 | WP_016387577.1 | hypothetical protein | - |
| PUW66_RS11815 (PUW66_11815) | 2553813..2555003 | + | 1191 | WP_049152646.1 | XRE family transcriptional regulator | - |
| PUW66_RS11820 (PUW66_11820) | 2554984..2555319 | + | 336 | WP_225356157.1 | hypothetical protein | - |
| PUW66_RS11825 (PUW66_11825) | 2555450..2556184 | + | 735 | WP_016377126.1 | site-specific DNA-methyltransferase | - |
| PUW66_RS11830 (PUW66_11830) | 2556283..2556504 | + | 222 | WP_003606383.1 | hypothetical protein | - |
| PUW66_RS11835 (PUW66_11835) | 2556508..2557005 | + | 498 | WP_016366471.1 | antirestriction protein ArdA | - |
| PUW66_RS11840 (PUW66_11840) | 2557067..2557459 | + | 393 | WP_010491186.1 | conjugal transfer protein | - |
| PUW66_RS11845 (PUW66_11845) | 2557443..2559908 | + | 2466 | WP_049152647.1 | ATP-binding protein | - |
| PUW66_RS11850 (PUW66_11850) | 2559895..2561988 | + | 2094 | WP_049152648.1 | conjugal transfer protein | - |
| PUW66_RS11855 (PUW66_11855) | 2561985..2562979 | + | 995 | Protein_2294 | hypothetical protein | VF |
| PUW66_RS11860 (PUW66_11860) | 2562989..2563522 | + | 534 | WP_014571616.1 | hypothetical protein | - |
| PUW66_RS11865 (PUW66_11865) | 2563519..2564442 | + | 924 | WP_005691157.1 | conjugal transfer protein | - |
| PUW66_RS11870 (PUW66_11870) | 2564614..2565612 | - | 999 | WP_049162301.1 | IS30 family transposase ISApl1 | Transposase |
| PUW66_RS11875 (PUW66_11875) | 2565682..2566158 | - | 477 | WP_225362989.1 | minor capsid protein | - |
| PUW66_RS11880 (PUW66_11880) | 2566157..2566659 | + | 503 | Protein_2299 | IS5 family transposase ISCARN82 | Transposase |
| PUW66_RS11885 (PUW66_11885) | 2566716..2567821 | + | 1106 | WP_275016727.1 | IS3 family transposase ISL1 | Transposase |
| PUW66_RS11890 (PUW66_11890) | 2567941..2568204 | + | 264 | Protein_2301 | IS5 family transposase ISCaa8 | Transposase |
| PUW66_RS11895 (PUW66_11895) | 2568335..2568559 | + | 225 | WP_003597463.1 | hypothetical protein | - |
| PUW66_RS11900 (PUW66_11900) | 2568650..2571595 | - | 2946 | WP_049152320.1 | YhgE/Pip domain-containing protein | - |
| PUW66_RS11905 (PUW66_11905) | 2571603..2572172 | - | 570 | WP_003662080.1 | TetR/AcrR family transcriptional regulator | - |
| PUW66_RS11910 (PUW66_11910) | 2572529..2572831 | + | 303 | Protein_2305 | GNAT family N-acetyltransferase | - |
| PUW66_RS11915 (PUW66_11915) | 2572892..2573679 | + | 788 | WP_274786301.1 | IS5 family transposase ISCaa8 | Transposase |
| PUW66_RS11920 (PUW66_11920) | 2573745..2573939 | + | 195 | Protein_2307 | transposase | - |
| PUW66_RS11925 (PUW66_11925) | 2574230..2575138 | - | 909 | WP_013727997.1 | magnesium transporter CorA family protein | - |
| PUW66_RS11930 (PUW66_11930) | 2575295..2575549 | - | 255 | Protein_2309 | divalent metal cation transporter | - |
| PUW66_RS11935 (PUW66_11935) | 2575563..2576209 | - | 647 | Protein_2310 | IS5 family transposase ISCaa8 | Transposase |
| PUW66_RS11940 (PUW66_11940) | 2576226..2576896 | - | 671 | Protein_2311 | IS5 family transposase ISCaa8 | Transposase |
| PUW66_RS11945 (PUW66_11945) | 2576901..2577068 | + | 168 | Protein_2312 | integrase core domain-containing protein | - |
| PUW66_RS11950 (PUW66_11950) | 2577187..2578203 | + | 1017 | WP_019728331.1 | IS30 family transposase ISSag3 | Transposase |
| PUW66_RS11955 (PUW66_11955) | 2578621..2580300 | + | 1680 | WP_003603298.1 | D-lactate dehydrogenase | - |
| PUW66_RS11960 (PUW66_11960) | 2580392..2580775 | - | 384 | WP_016376168.1 | PaaI family thioesterase | - |
| PUW66_RS11965 (PUW66_11965) | 2580810..2581631 | + | 822 | WP_016376169.1 | 1,4-dihydroxy-2-naphthoyl-CoA synthase | - |
| PUW66_RS11970 (PUW66_11970) | 2581641..2583065 | + | 1425 | WP_049152610.1 | o-succinylbenzoate--CoA ligase | - |
| PUW66_RS11975 (PUW66_11975) | 2583112..2584305 | + | 1194 | WP_049152608.1 | MFS transporter | - |
| PUW66_RS11980 (PUW66_11980) | 2584408..2584656 | - | 249 | Protein_2319 | IS30 family transposase IS1070 | Transposase |
| PUW66_RS11985 (PUW66_11985) | 2584791..2585900 | + | 1110 | Protein_2320 | IS5 family transposase ISLrh3 | Transposase |
| PUW66_RS11990 (PUW66_11990) | 2585954..2586637 | - | 684 | WP_049152600.1 | IS6 family transposase ISBth20 | Transposase |
| PUW66_RS11995 (PUW66_11995) | 2586858..2587778 | - | 921 | WP_109212417.1 | IS30 family transposase ISLpl1 | Transposase |
| PUW66_RS12000 (PUW66_12000) | 2587929..2588069 | - | 141 | Protein_2323 | transposase | - |
| PUW66_RS12005 (PUW66_12005) | 2588142..2588825 | - | 684 | WP_049146068.1 | IS6 family transposase ISBth20 | Transposase |
| PUW66_RS12010 (PUW66_12010) | 2588947..2589171 | + | 225 | WP_225356151.1 | hypothetical protein | - |
| PUW66_RS12015 (PUW66_12015) | 2589265..2589937 | - | 673 | Protein_2326 | IS30-like element ISLpl1 family transposase | - |
| PUW66_RS12020 (PUW66_12020) | 2590036..2590391 | - | 356 | Protein_2327 | IS5 family transposase ISCARN82 | Transposase |
| PUW66_RS12025 (PUW66_12025) | 2590571..2591158 | - | 588 | WP_049152616.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| PUW66_RS12030 (PUW66_12030) | 2591245..2591442 | - | 198 | WP_225358531.1 | type I toxin-antitoxin system Fst family toxin | - |
| PUW66_RS12035 (PUW66_12035) | 2591535..2592251 | - | 717 | WP_003572070.1 | nitroreductase family protein | - |
| PUW66_RS12040 (PUW66_12040) | 2592863..2593306 | - | 444 | WP_049152617.1 | abortive infection family protein | - |
| PUW66_RS12045 (PUW66_12045) | 2593660..2594904 | - | 1245 | Protein_2332 | xylose isomerase | - |
| PUW66_RS12050 (PUW66_12050) | 2594987..2596156 | - | 1170 | WP_016381839.1 | ROK family transcriptional regulator | - |
| PUW66_RS12055 (PUW66_12055) | 2596205..2596615 | - | 411 | WP_016381840.1 | PTS sugar transporter subunit IIA | - |
| PUW66_RS12060 (PUW66_12060) | 2596630..2597115 | - | 486 | WP_016381841.1 | PTS sugar transporter subunit IIB | - |
| PUW66_RS12065 (PUW66_12065) | 2597131..2597943 | - | 813 | WP_016381842.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| PUW66_RS12070 (PUW66_12070) | 2597936..2598721 | - | 786 | WP_016381843.1 | PTS sugar transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|