MGE detailed information
MGE type: Prophage MGE length: 62625 bp
Accession: NZ_CP117960 Location: 177042..239666 Organism: Escherichia coli strain B-3008 Replicon: chromosome
Accession: NZ_CP117960 Location: 177042..239666 Organism: Escherichia coli strain B-3008 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT288_RS00855 (172941) | 172941..174161 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| PT288_RS00860 (174286) | 174286..174981 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| PT288_RS00865 (174934) | 174934..176226 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| PT288_RS00870 (176385) | 176385..176999 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| PT288_RS00875 (177042) | 177042..177896 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| PT288_RS00880 (177898) | 177898..178515 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| PT288_RS00885 (178526) | 178526..180949 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| PT288_RS00890 (181010) | 181010..183436 | - | 2427 | WP_000041681.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| PT288_RS00895 (183635) | 183635..183940 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| PT288_RS00900 (184048) | 184048..184758 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| PT288_RS00905 (184761) | 184761..185321 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| PT288_RS00910 (185356) | 185356..185697 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| PT288_RS00915 (185832) | 185832..186158 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| PT288_RS00920 (186364) | 186364..187578 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| PT288_RS00925 (187590) | 187590..188609 | + | 1020 | WP_000836051.1 | Zn-dependent oxidoreductase | - |
| PT288_RS00930 (188797) | 188797..190077 | - | 1281 | WP_000876960.1 | hypothetical protein ; Integrase | Integrase |
| PT288_RS00935 (190112) | 190112..190363 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| PT288_RS00940 (190436) | 190436..192913 | - | 2478 | WP_000048362.1 | exonuclease | - |
| PT288_RS00945 (193006) | 193006..193197 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| PT288_RS00950 (193194) | 193194..193382 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| PT288_RS00955 (193950) | 193950..194168 | - | 219 | WP_001171942.1 | protein YdfC | - |
| PT288_RS00960 (194198) | 194198..194326 | - | 129 | WP_000344964.1 | protein YdfB | - |
| PT288_RS00965 (194328) | 194328..194483 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| PT288_RS00970 (194650) | 194650..195057 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| PT288_RS00975 (195141) | 195141..195371 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| PT288_RS00980 (195355) | 195355..195876 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| PT288_RS00985 (195857) | 195857..196822 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| PT288_RS00990 (196863) | 196863..197285 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| PT288_RS00995 (197282) | 197282..197771 | + | 490 | Protein_195 | class I SAM-dependent methyltransferase | - |
| PT288_RS01000 (198249) | 198249..198670 | + | 422 | Protein_196 | hypothetical protein | - |
| PT288_RS01005 (199326) | 199326..200348 | + | 1023 | Protein_197 | ISNCY family transposase ISCARN112 | Transposase |
| PT288_RS01010 (200469) | 200469..200618 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| PT288_RS01015 (201080) | 201080..201412 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| PT288_RS01020 (201615) | 201615..201920 | - | 306 | WP_001326990.1 | protein YdfV | - |
| PT288_RS01025 (201945) | 201945..202184 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| PT288_RS01030 (202184) | 202184..202471 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| PT288_RS01035 (202543) | 202543..202698 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| PT288_RS01040 (202915) | 202915..203166 | + | 252 | WP_000980994.1 | protein Rem | - |
| PT288_RS01045 (203233) | 203233..203511 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| PT288_RS01050 (203513) | 203513..204562 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| PT288_RS01055 (204576) | 204576..205328 | + | 753 | WP_001047134.1 | antitermination protein | - |
| PT288_RS01060 (205606) | 205606..205695 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| PT288_RS01065 (205750) | 205750..205962 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| PT288_RS01070 (206263) | 206263..206478 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| PT288_RS01075 (206842) | 206842..207012 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| PT288_RS01080 (207232) | 207232..207447 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| PT288_RS01085 (207452) | 207452..207763 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| PT288_RS01090 (207760) | 207760..208293 | + | 534 | WP_001092971.1 | lysozyme | - |
| PT288_RS01095 (208290) | 208290..208787 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| PT288_RS01100 (209150) | 209150..209362 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| PT288_RS01105 (209373) | 209373..209561 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| PT288_RS01110 (209564) | 209564..209629 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| PT288_RS01115 (209634) | 209634..209864 | + | 231 | WP_000720962.1 | protein YnfN | - |
| PT288_RS01120 (210036) | 210036..210209 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| PT288_RS01125 (210361) | 210361..210771 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| PT288_RS01130 (210829) | 210829..211062 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| PT288_RS01135 (211451) | 211451..211996 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| PT288_RS01140 (211971) | 211971..213896 | + | 1926 | WP_001027293.1 | phage terminase large subunit family protein | - |
| PT288_RS01145 (213893) | 213893..214099 | + | 207 | WP_000198149.1 | gpW family protein | - |
| PT288_RS01150 (214096) | 214096..215697 | + | 1602 | WP_001529148.1 | phage portal protein | - |
| PT288_RS01155 (215678) | 215678..216997 | + | 1320 | WP_000123311.1 | S49 family peptidase | - |
| PT288_RS01160 (217007) | 217007..217339 | + | 333 | WP_012304872.1 | head decoration protein | - |
| PT288_RS01165 (217395) | 217395..218420 | + | 1026 | WP_000063254.1 | major capsid protein | - |
| PT288_RS01170 (218462) | 218462..218857 | + | 396 | WP_000158875.1 | DNA-packaging protein FI | - |
| PT288_RS01175 (218869) | 218869..219222 | + | 354 | WP_000785282.1 | head-tail joining protein | - |
| PT288_RS01180 (219234) | 219234..219810 | + | 577 | Protein_232 | phage tail protein | - |
| PT288_RS01185 (219807) | 219807..220202 | + | 396 | WP_000683129.1 | phage minor tail U family protein | - |
| PT288_RS01190 (220210) | 220210..220950 | + | 741 | WP_001361512.1 | phage tail protein | - |
| PT288_RS01195 (220966) | 220966..221388 | + | 423 | WP_000479193.1 | phage minor tail protein G | - |
| PT288_RS01200 (221370) | 221370..221804 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| PT288_RS01205 (221797) | 221797..224358 | + | 2562 | WP_000840289.1 | phage tail tape measure protein | - |
| PT288_RS01210 (224355) | 224355..224684 | + | 330 | WP_000847347.1 | phage tail protein | - |
| PT288_RS01215 (224684) | 224684..225382 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| PT288_RS01220 (225388) | 225388..226131 | + | 744 | WP_012304874.1 | Mov34/MPN/PAD-1 family protein | - |
| PT288_RS01225 (226128) | 226128..226700 | + | 573 | WP_000847668.1 | tail assembly protein | - |
| PT288_RS01230 (226761) | 226761..230240 | + | 3480 | WP_000515744.1 | host specificity protein J | - |
| PT288_RS01235 (230308) | 230308..230907 | + | 600 | WP_001233110.1 | hypothetical protein | VF |
| PT288_RS01240 (230972) | 230972..233995 | + | 3024 | WP_000279128.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PT288_RS01245 (233995) | 233995..234570 | + | 576 | WP_000885587.1 | tail fiber assembly protein | - |
| PT288_RS01250 (234668) | 234668..235258 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| PT288_RS01255 (235575) | 235575..235808 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| PT288_RS01260 (235877) | 235877..235990 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| PT288_RS01265 (236595) | 236595..237878 | + | 1284 | Protein_249 | MHS family MFS transporter YdfJ | - |
| PT288_RS01270 (237967) | 237967..239427 | + | 1461 | WP_000527806.1 | mannitol dehydrogenase family protein | - |
| PT288_RS01275 (239463) | 239463..239666 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| PT288_RS01280 (239843) | 239843..240529 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| PT288_RS01285 (240618) | 240618..241364 | - | 747 | WP_001324973.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| PT288_RS01290 (241501) | 241501..243546 | + | 2046 | WP_001437709.1 | peptidyl-dipeptidase Dcp | - |
| PT288_RS01295 (243591) | 243591..244109 | - | 519 | WP_001024560.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|