MGE detailed information
MGE type: Prophage MGE length: 46723 bp
Accession: NZ_CP117821 Location: 1181353..1228075 Organism: Xylella fastidiosa strain ICMP 8731 Replicon: chromosome
Accession: NZ_CP117821 Location: 1181353..1228075 Organism: Xylella fastidiosa strain ICMP 8731 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT013_RS05240 (PT013_05240) | 1176681..1177466 | + | 786 | WP_004087362.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PT013_RS05245 (PT013_05245) | 1177503..1180109 | - | 2607 | WP_004087363.1 | DNA mismatch repair protein MutS | - |
| PT013_RS05250 (PT013_05250) | 1180542..1181273 | - | 732 | WP_012382616.1 | monofunctional biosynthetic peptidoglycan transglycosylase | - |
| PT013_RS05255 (PT013_05255) | 1181353..1182213 | + | 861 | WP_004087365.1 | Hsp33 family molecular chaperone HslO | - |
| PT013_RS05260 (PT013_05260) | 1182367..1183236 | + | 870 | WP_014607779.1 | hypothetical protein | - |
| PT013_RS05270 (PT013_05270) | 1184009..1184353 | - | 345 | WP_004084923.1 | RidA family protein | - |
| PT013_RS05275 (PT013_05275) | 1184556..1184711 | - | 156 | WP_225621678.1 | helix-turn-helix domain-containing protein | - |
| PT013_RS05280 (PT013_05280) | 1185080..1186162 | - | 1083 | WP_011097927.1 | phage late control D family protein | - |
| PT013_RS05285 (PT013_05285) | 1186153..1186371 | - | 219 | WP_004088371.1 | tail protein X | - |
| PT013_RS05290 (PT013_05290) | 1186368..1186850 | - | 483 | WP_011097928.1 | phage tail protein | - |
| PT013_RS05295 (PT013_05295) | 1186847..1189066 | - | 2220 | WP_011097929.1 | phage tail tape measure protein | - |
| PT013_RS05300 (PT013_05300) | 1189193..1189480 | - | 288 | WP_011097930.1 | phage tail assembly protein | - |
| PT013_RS05305 (PT013_05305) | 1189483..1189992 | - | 510 | WP_004086986.1 | phage major tail tube protein | - |
| PT013_RS05310 (PT013_05310) | 1189992..1191170 | - | 1179 | WP_011097931.1 | phage tail sheath family protein | - |
| PT013_RS05315 (PT013_05315) | 1191235..1192827 | - | 1593 | WP_012382617.1 | tail fiber domain-containing protein | - |
| PT013_RS05320 (PT013_05320) | 1192835..1193392 | - | 558 | WP_011097610.1 | phage tail protein I | - |
| PT013_RS05325 (PT013_05325) | 1193385..1194278 | - | 894 | WP_011097611.1 | baseplate J/gp47 family protein | - |
| PT013_RS05330 (PT013_05330) | 1194278..1194640 | - | 363 | WP_014607615.1 | GPW/gp25 family protein | - |
| PT013_RS05335 (PT013_05335) | 1194766..1195029 | + | 264 | WP_004090907.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| PT013_RS05340 (PT013_05340) | 1195016..1195297 | + | 282 | WP_004090909.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| PT013_RS05345 (PT013_05345) | 1195334..1195921 | - | 588 | WP_011097612.1 | phage baseplate assembly protein V | - |
| PT013_RS05350 (PT013_05350) | 1195918..1196460 | - | 543 | WP_011097613.1 | hypothetical protein | - |
| PT013_RS05355 (PT013_05355) | 1196436..1196957 | - | 522 | WP_011097614.1 | hypothetical protein | - |
| PT013_RS05360 (PT013_05360) | 1196954..1197277 | - | 324 | WP_012382618.1 | hypothetical protein | - |
| PT013_RS05365 (PT013_05365) | 1197277..1197537 | - | 261 | WP_012382619.1 | hypothetical protein | - |
| PT013_RS05370 (PT013_05370) | 1197555..1199429 | - | 1875 | WP_012382620.1 | phage major capsid protein | - |
| PT013_RS05375 (PT013_05375) | 1199426..1201012 | - | 1587 | WP_012382621.1 | phage portal protein | - |
| PT013_RS05380 (PT013_05380) | 1201009..1201560 | - | 552 | WP_004088901.1 | hypothetical protein | - |
| PT013_RS05385 (PT013_05385) | 1201564..1203516 | - | 1953 | WP_004088899.1 | phage terminase large subunit family protein | - |
| PT013_RS05390 (PT013_05390) | 1203509..1204042 | - | 534 | WP_004088896.1 | terminase small subunit | - |
| PT013_RS05395 (PT013_05395) | 1204215..1204439 | - | 225 | WP_012382622.1 | hypothetical protein | - |
| PT013_RS05400 (PT013_05400) | 1204441..1204902 | - | 462 | WP_011097939.1 | hypothetical protein | - |
| PT013_RS05405 (PT013_05405) | 1204892..1205221 | - | 330 | WP_004086884.1 | phage holin family protein | - |
| PT013_RS05410 (PT013_05410) | 1205214..1205708 | - | 495 | WP_011097941.1 | lysozyme | - |
| PT013_RS05415 (PT013_05415) | 1205675..1206292 | - | 618 | WP_011097942.1 | hypothetical protein | - |
| PT013_RS05420 (PT013_05420) | 1206711..1209242 | - | 2532 | WP_012382624.1 | phage/plasmid primase, P4 family | - |
| PT013_RS05425 (PT013_05425) | 1209378..1209944 | - | 567 | WP_011097944.1 | Bro-N domain-containing protein | - |
| PT013_RS05430 (PT013_05430) | 1209941..1210327 | - | 387 | WP_011097945.1 | phage antirepressor | - |
| PT013_RS05435 (PT013_05435) | 1210324..1210710 | - | 387 | WP_011097946.1 | hypothetical protein | - |
| PT013_RS05440 (PT013_05440) | 1210707..1211093 | - | 387 | WP_011097947.1 | phage antirepressor | - |
| PT013_RS05445 (PT013_05445) | 1211090..1211476 | - | 387 | WP_012382625.1 | phage antirepressor | - |
| PT013_RS05450 (PT013_05450) | 1211473..1211736 | - | 264 | WP_228446140.1 | hypothetical protein | - |
| PT013_RS05455 (PT013_05455) | 1211961..1212206 | - | 246 | WP_012382627.1 | hypothetical protein | - |
| PT013_RS05460 (PT013_05460) | 1212267..1212482 | - | 216 | WP_012382628.1 | hypothetical protein | - |
| PT013_RS05465 (PT013_05465) | 1212512..1212700 | - | 189 | WP_012382629.1 | hypothetical protein | - |
| PT013_RS05470 (PT013_05470) | 1212754..1212930 | - | 177 | WP_174851808.1 | hypothetical protein | - |
| PT013_RS05475 (PT013_05475) | 1213310..1213570 | - | 261 | WP_012382631.1 | YdaS family helix-turn-helix protein | - |
| PT013_RS05480 (PT013_05480) | 1213656..1214414 | + | 759 | WP_011097952.1 | helix-turn-helix transcriptional regulator | - |
| PT013_RS05485 (PT013_05485) | 1214575..1215114 | + | 540 | WP_011097953.1 | hypothetical protein | - |
| PT013_RS05490 (PT013_05490) | 1215137..1215346 | + | 210 | WP_012382632.1 | hypothetical protein | - |
| PT013_RS05495 (PT013_05495) | 1215343..1215783 | + | 441 | WP_011097954.1 | hypothetical protein | - |
| PT013_RS05500 (PT013_05500) | 1216001..1216390 | + | 390 | WP_011097955.1 | hypothetical protein | - |
| PT013_RS05505 (PT013_05505) | 1216387..1216851 | + | 465 | WP_011097956.1 | DUF1566 domain-containing protein | - |
| PT013_RS05510 (PT013_05510) | 1216908..1217390 | - | 483 | WP_004088357.1 | hypothetical protein | - |
| PT013_RS05515 (PT013_05515) | 1217690..1217881 | + | 192 | WP_012382634.1 | hypothetical protein | - |
| PT013_RS05520 (PT013_05520) | 1217905..1218096 | + | 192 | WP_012382635.1 | hypothetical protein | - |
| PT013_RS05525 (PT013_05525) | 1218128..1218325 | + | 198 | WP_004090711.1 | hypothetical protein | - |
| PT013_RS05530 (PT013_05530) | 1218312..1218809 | + | 498 | WP_012382636.1 | hypothetical protein | - |
| PT013_RS05535 (PT013_05535) | 1218806..1220083 | + | 1278 | WP_012382637.1 | DUF2800 domain-containing protein | - |
| PT013_RS05540 (PT013_05540) | 1220083..1220649 | + | 567 | WP_004090881.1 | DUF2815 family protein | - |
| PT013_RS05545 (PT013_05545) | 1220736..1222247 | + | 1512 | WP_011097960.1 | BRO family protein | - |
| PT013_RS05550 (PT013_05550) | 1222249..1224429 | + | 2181 | WP_011097961.1 | DNA polymerase | - |
| PT013_RS05555 (PT013_05555) | 1224426..1224704 | + | 279 | WP_011097962.1 | VRR-NUC domain-containing protein | - |
| PT013_RS05560 (PT013_05560) | 1224706..1225152 | - | 447 | WP_012382639.1 | DUF1640 domain-containing protein | - |
| PT013_RS05565 (PT013_05565) | 1225237..1226655 | + | 1419 | WP_274205383.1 | DEAD/DEAH box helicase | - |
| PT013_RS05570 (PT013_05570) | 1226652..1226816 | + | 165 | WP_012382640.1 | hypothetical protein | - |
| PT013_RS05575 (PT013_05575) | 1226809..1227066 | + | 258 | WP_011097965.1 | DUF4224 domain-containing protein | - |
| PT013_RS05580 (PT013_05580) | 1227056..1228075 | + | 1020 | WP_011097966.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PT013_RS05585 (PT013_05585) | 1228439..1231030 | + | 2592 | WP_004087286.1 | bifunctional lysylphosphatidylglycerol flippase/synthetase MprF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|