MGE detailed information
MGE type: Prophage MGE length: 38968 bp
Accession: NZ_CP117820 Location: 447794..486761 Organism: Xylella fastidiosa strain ICMP 8740 Replicon: chromosome
Accession: NZ_CP117820 Location: 447794..486761 Organism: Xylella fastidiosa strain ICMP 8740 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT012_RS01850 (PT012_01850) | 443166..444956 | + | 1791 | WP_004085196.1 | succinate dehydrogenase flavoprotein subunit | - |
| PT012_RS01855 (PT012_01855) | 444977..445762 | + | 786 | WP_004085195.1 | succinate dehydrogenase iron-sulfur subunit | - |
| PT012_RS01860 (PT012_01860) | 445883..446131 | + | 249 | WP_027700426.1 | succinate dehydrogenase assembly factor 2 | - |
| PT012_RS01865 (PT012_01865) | 446082..446534 | + | 453 | WP_004085193.1 | hypothetical protein | - |
| PT012_RS01870 (PT012_01870) | 446560..447801 | + | 1242 | WP_004085192.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| PT012_RS01875 (PT012_01875) | 447794..448516 | + | 723 | WP_004085191.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| PT012_RS01880 (PT012_01880) | 448864..451341 | + | 2478 | WP_027700427.1 | DNA internalization-related competence protein ComEC/Rec2 | - |
| PT012_RS01885 (PT012_01885) | 451326..451988 | + | 663 | WP_004085189.1 | MotA/TolQ/ExbB proton channel family protein | - |
| PT012_RS01890 (PT012_01890) | 451993..452430 | + | 438 | WP_004089267.1 | biopolymer transporter ExbD | - |
| PT012_RS01895 (PT012_01895) | 452448..454196 | + | 1749 | WP_027700428.1 | Lipid A export ATP-binding/permease protein MsbA | VF |
| PT012_RS01900 (PT012_01900) | 454193..455212 | + | 1020 | WP_004085186.1 | Tetraacyldisaccharide 4'-kinase | VF |
| PT012_RS01905 (PT012_01905) | 455587..456669 | - | 1083 | WP_027700429.1 | phage late control D family protein | - |
| PT012_RS01910 (PT012_01910) | 456660..456878 | - | 219 | WP_027700430.1 | tail protein X | - |
| PT012_RS01915 (PT012_01915) | 456875..457357 | - | 483 | WP_027700431.1 | phage tail protein | - |
| PT012_RS01920 (PT012_01920) | 457354..459609 | - | 2256 | WP_258057514.1 | phage tail tape measure protein | - |
| PT012_RS01925 (PT012_01925) | 459700..459987 | - | 288 | WP_012337638.1 | phage tail assembly protein | - |
| PT012_RS01930 (PT012_01930) | 459990..460499 | - | 510 | WP_027700433.1 | phage major tail tube protein | - |
| PT012_RS01935 (PT012_01935) | 460499..461677 | - | 1179 | WP_027700434.1 | phage tail sheath family protein | - |
| PT012_RS01940 (PT012_01940) | 461742..463334 | - | 1593 | WP_027700435.1 | tail fiber domain-containing protein | - |
| PT012_RS01945 (PT012_01945) | 463342..463899 | - | 558 | WP_027700436.1 | phage tail protein I | - |
| PT012_RS01950 (PT012_01950) | 463892..464785 | - | 894 | WP_038284057.1 | baseplate J/gp47 family protein | - |
| PT012_RS01955 (PT012_01955) | 464785..465108 | - | 324 | WP_228304176.1 | GPW/gp25 family protein | - |
| PT012_RS01960 (PT012_01960) | 465257..465571 | + | 315 | WP_004087029.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PT012_RS01965 (PT012_01965) | 465573..465854 | + | 282 | WP_004087027.1 | XRE family transcriptional regulator | - |
| PT012_RS01970 (PT012_01970) | 465866..466165 | + | 300 | WP_004087025.1 | HigA family addiction module antitoxin | - |
| PT012_RS01975 (PT012_01975) | 466170..466757 | - | 588 | WP_027700438.1 | phage baseplate assembly protein V | - |
| PT012_RS01980 (PT012_01980) | 466754..467296 | - | 543 | WP_027700439.1 | hypothetical protein | - |
| PT012_RS01985 (PT012_01985) | 467272..467793 | - | 522 | WP_027700440.1 | hypothetical protein | - |
| PT012_RS01990 (PT012_01990) | 467790..468113 | - | 324 | WP_027700441.1 | hypothetical protein | - |
| PT012_RS01995 (PT012_01995) | 468113..468373 | - | 261 | WP_027700442.1 | hypothetical protein | - |
| PT012_RS02000 (PT012_02000) | 468391..470265 | - | 1875 | WP_027700443.1 | phage major capsid protein | - |
| PT012_RS02005 (PT012_02005) | 470262..471848 | - | 1587 | WP_027700444.1 | phage portal protein | - |
| PT012_RS02010 (PT012_02010) | 471845..472396 | - | 552 | WP_027700445.1 | hypothetical protein | - |
| PT012_RS02015 (PT012_02015) | 472400..474352 | - | 1953 | WP_027700446.1 | phage terminase large subunit family protein | - |
| PT012_RS02020 (PT012_02020) | 474345..474878 | - | 534 | WP_051247998.1 | terminase small subunit | - |
| PT012_RS02025 (PT012_02025) | 475051..475275 | - | 225 | WP_027700448.1 | hypothetical protein | - |
| PT012_RS02030 (PT012_02030) | 475277..475738 | - | 462 | WP_140162026.1 | hypothetical protein | - |
| PT012_RS02035 (PT012_02035) | 475728..476057 | - | 330 | WP_004085022.1 | phage holin family protein | - |
| PT012_RS02040 (PT012_02040) | 476050..476550 | - | 501 | WP_234499714.1 | lysozyme | - |
| PT012_RS02045 (PT012_02045) | 476650..477381 | - | 732 | WP_272819592.1 | site-specific DNA-methyltransferase | - |
| PT012_RS02050 (PT012_02050) | 477571..477906 | - | 336 | WP_004085025.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| PT012_RS02055 (PT012_02055) | 477903..478157 | - | 255 | WP_004089517.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| PT012_RS02060 (PT012_02060) | 478237..478932 | - | 696 | WP_272819593.1 | hypothetical protein | - |
| PT012_RS02065 (PT012_02065) | 478875..479222 | - | 348 | WP_160168467.1 | hypothetical protein | - |
| PT012_RS02070 (PT012_02070) | 479411..480679 | + | 1269 | WP_274169893.1 | DNA polymerase | - |
| PT012_RS02075 (PT012_02075) | 480676..480954 | + | 279 | WP_071869551.1 | VRR-NUC domain-containing protein | - |
| PT012_RS02080 (PT012_02080) | 480956..481339 | - | 384 | WP_027700081.1 | hypothetical protein | - |
| PT012_RS02085 (PT012_02085) | 481424..482842 | + | 1419 | WP_027700080.1 | DEAD/DEAH box helicase | - |
| PT012_RS02090 (PT012_02090) | 482839..483003 | + | 165 | WP_169709885.1 | hypothetical protein | - |
| PT012_RS02095 (PT012_02095) | 482996..483244 | + | 249 | WP_027700079.1 | DUF4224 domain-containing protein | - |
| PT012_RS02100 (PT012_02100) | 483244..484263 | + | 1020 | WP_274169894.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PT012_RS02105 (PT012_02105) | 485039..485680 | + | 642 | WP_027700077.1 | hypothetical protein | VF |
| PT012_RS02110 (PT012_02110) | 485708..486184 | + | 477 | WP_004085683.1 | histidine phosphatase family protein | - |
| PT012_RS02115 (PT012_02115) | 486189..486761 | + | 573 | WP_004085682.1 | YceI family protein | - |
| PT012_RS02120 (PT012_02120) | 486758..488716 | + | 1959 | WP_027700076.1 | phospholipase D family protein | - |
| PT012_RS02125 (PT012_02125) | 489653..490042 | - | 390 | WP_004089975.1 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|