MGE detailed information
MGE type: Genomic_island MGE length: 21306 bp
Accession: NZ_CP117820 Location: 1648109..1669414 Organism: Xylella fastidiosa strain ICMP 8740 Replicon: chromosome
Accession: NZ_CP117820 Location: 1648109..1669414 Organism: Xylella fastidiosa strain ICMP 8740 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT012_RS07430 (PT012_07430) | 1644496..1644816 | - | 321 | WP_225621864.1 | GH25 family lysozyme | - |
| PT012_RS07435 (PT012_07435) | 1645025..1645207 | + | 183 | WP_027700467.1 | hypothetical protein | - |
| PT012_RS07440 (PT012_07440) | 1645491..1646417 | - | 927 | WP_027700468.1 | Grx4 family monothiol glutaredoxin | - |
| PT012_RS07445 (PT012_07445) | 1646516..1647259 | + | 744 | WP_225621865.1 | polysaccharide deacetylase family protein | - |
| PT012_RS07450 (PT012_07450) | 1647903..1648094 | - | 192 | WP_027700471.1 | hypothetical protein | - |
| PT012_RS07455 (PT012_07455) | 1648512..1648931 | - | 420 | WP_004085763.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| PT012_RS07460 (PT012_07460) | 1648931..1649170 | - | 240 | WP_004085761.1 | ribbon-helix-helix domain-containing protein | - |
| PT012_RS07465 (PT012_07465) | 1649615..1649857 | + | 243 | WP_004085758.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| PT012_RS07470 (PT012_07470) | 1649850..1650137 | + | 288 | WP_004085905.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PT012_RS07475 (PT012_07475) | 1650225..1650791 | + | 567 | WP_004085755.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| PT012_RS07480 (PT012_07480) | 1650808..1652040 | - | 1233 | WP_140160997.1 | IS607 family transposase ISCARN56 | Transposase |
| PT012_RS07485 (PT012_07485) | 1652034..1652660 | - | 627 | WP_140160998.1 | IS607 family transposase ISCfe1 | Transposase |
| PT012_RS07490 (PT012_07490) | 1652890..1654164 | - | 1275 | WP_012337985.1 | pyridoxal phosphate-dependent aminotransferase | - |
| PT012_RS07495 (PT012_07495) | 1654569..1656731 | + | 2163 | WP_012337986.1 | Toxin RTX-I translocation ATP-binding protein | VF |
| PT012_RS07500 (PT012_07500) | 1656728..1658149 | + | 1422 | WP_004085930.1 | Hemolysin secretion protein D, plasmid | VF |
| PT012_RS07505 (PT012_07505) | 1658675..1659298 | + | 624 | WP_004086041.1 | hypothetical protein | - |
| PT012_RS07510 (PT012_07510) | 1659295..1659567 | + | 273 | WP_021358268.1 | hypothetical protein | - |
| PT012_RS07515 (PT012_07515) | 1659570..1660187 | + | 618 | WP_004086046.1 | hypothetical protein | - |
| PT012_RS07520 (PT012_07520) | 1660187..1661491 | + | 1305 | WP_234499729.1 | bacteriocin | - |
| PT012_RS07525 (PT012_07525) | 1661962..1662084 | + | 123 | WP_262363527.1 | hypothetical protein | - |
| PT012_RS07530 (PT012_07530) | 1662215..1662457 | + | 243 | WP_155238073.1 | hypothetical protein | - |
| PT012_RS07535 (PT012_07535) | 1662512..1664284 | - | 1773 | WP_027700253.1 | hypothetical protein | - |
| PT012_RS07545 (PT012_07545) | 1664924..1665874 | - | 951 | WP_012337991.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| PT012_RS07550 (PT012_07550) | 1665933..1666436 | - | 504 | WP_004085935.1 | Lipoprotein signal peptidase | VF |
| PT012_RS07555 (PT012_07555) | 1666583..1669414 | - | 2832 | WP_027700255.1 | isoleucine--tRNA ligase | - |
| PT012_RS07560 (PT012_07560) | 1669411..1670358 | - | 948 | WP_004085938.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| PT012_RS07565 (PT012_07565) | 1670520..1672130 | - | 1611 | WP_038283983.1 | murein biosynthesis integral membrane protein MurJ | - |
| PT012_RS07570 (PT012_07570) | 1672230..1672499 | + | 270 | WP_010894866.1 | 30S ribosomal protein S20 | - |
| PT012_RS07575 (PT012_07575) | 1672613..1673686 | - | 1074 | WP_004085947.1 | GTPase ObgE | - |
| PT012_RS07580 (PT012_07580) | 1673861..1674118 | - | 258 | WP_004085949.1 | 50S ribosomal protein L27 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|