MGE detailed information
MGE type: Prophage MGE length: 59879 bp
Accession: NZ_CP117615 Location: 2536982..2596860 Organism: Escherichia albertii strain BIA_25 Replicon: chromosome
Accession: NZ_CP117615 Location: 2536982..2596860 Organism: Escherichia albertii strain BIA_25 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS046_RS12340 () | 2532849..2533283 | + | 435 | WP_059268429.1 | universal stress protein UspF | - |
| PS046_RS12345 () | 2533287..2533532 | - | 246 | WP_095574554.1 | hypothetical protein | - |
| PS046_RS12350 () | 2534571..2535011 | - | 441 | WP_059221914.1 | hypothetical protein | - |
| PS046_RS12355 () | 2535470..2536105 | - | 636 | WP_172843671.1 | T3SS effector NleG family protein | - |
| PS046_RS12360 () | 2536574..2536849 | - | 276 | WP_273811862.1 | T3SS effector NleG family protein | - |
| PS046_RS12365 () | 2536982..2538013 | + | 1032 | WP_273811864.1 | IS630 family transposase ISSpu2 | Transposase |
| PS046_RS12370 () | 2538025..2538321 | - | 297 | WP_273811866.1 | hypothetical protein | - |
| PS046_RS12375 () | 2538381..2539058 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| PS046_RS12380 () | 2539058..2539405 | + | 348 | WP_273811867.1 | IS66 family transposase ISCro1 | Transposase |
| PS046_RS12385 () | 2539425..2540996 | + | 1572 | WP_273811869.1 | IS66 family transposase ISCro1 | Transposase |
| PS046_RS12390 () | 2541160..2541534 | + | 375 | Protein_2427 | tyrosine-type recombinase/integrase | - |
| PS046_RS12395 () | 2542352..2542999 | + | 648 | WP_048970375.1 | hypothetical protein | VF |
| PS046_RS12400 () | 2543196..2543898 | - | 703 | Protein_2429 | hypothetical protein | VF |
| PS046_RS12405 () | 2544053..2544163 | - | 111 | Protein_2430 | tail fiber assembly protein | - |
| PS046_RS12410 () | 2544291..2544608 | + | 318 | WP_273810525.1 | YkgJ family cysteine cluster protein | - |
| PS046_RS12420 () | 2546159..2547268 | + | 1110 | WP_273810748.1 | secretion protein EspV | - |
| PS046_RS12425 () | 2547828..2548388 | - | 561 | WP_059217651.1 | hypothetical protein | VF |
| PS046_RS12430 () | 2548803..2549081 | + | 279 | WP_059217652.1 | hypothetical protein | - |
| PS046_RS12435 () | 2549416..2550297 | - | 882 | WP_059217654.1 | hypothetical protein | VF |
| PS046_RS12440 () | 2550411..2550680 | - | 270 | WP_001023428.1 | phage tail fiber C-terminal domain-containing protein | - |
| PS046_RS12445 () | 2550682..2551995 | - | 1314 | WP_273810524.1 | ISNCY family transposase KIS | Transposase |
| PS046_RS12450 () | 2552057..2555470 | - | 3414 | WP_273811873.1 | host specificity protein J | - |
| PS046_RS12455 () | 2555531..2556079 | - | 549 | WP_233929418.1 | tail assembly protein | - |
| PS046_RS12460 () | 2556076..2556819 | - | 744 | WP_273810522.1 | C40 family peptidase | - |
| PS046_RS12465 () | 2556824..2557522 | - | 699 | WP_273810521.1 | phage minor tail protein L | - |
| PS046_RS12470 () | 2557522..2557818 | - | 297 | WP_024184658.1 | phage tail protein | - |
| PS046_RS12475 () | 2557847..2561056 | - | 3210 | WP_273810520.1 | phage tail tape measure protein | - |
| PS046_RS12480 () | 2561531..2561887 | - | 357 | Protein_2445 | hypothetical protein | - |
| PS046_RS12485 () | 2562038..2563000 | - | 963 | WP_024229411.1 | phage tail tube protein | - |
| PS046_RS12490 () | 2563027..2563419 | - | 393 | WP_273810519.1 | phage tail terminator-like protein | - |
| PS046_RS12495 () | 2563416..2563796 | - | 381 | WP_024229408.1 | hypothetical protein | - |
| PS046_RS12500 () | 2563797..2564180 | - | 384 | WP_273813200.1 | glutamate 5-kinase | - |
| PS046_RS12505 () | 2564180..2564575 | - | 396 | WP_273811875.1 | protein singed | - |
| PS046_RS12510 () | 2564579..2564803 | - | 225 | WP_059214847.1 | hypothetical protein | - |
| PS046_RS12515 () | 2564845..2565984 | - | 1140 | WP_024229403.1 | P22 phage major capsid protein family protein | - |
| PS046_RS12520 () | 2566084..2566848 | - | 765 | WP_024229402.1 | hypothetical protein | - |
| PS046_RS12525 () | 2566953..2568065 | - | 1113 | WP_273810572.1 | phage minor head protein | - |
| PS046_RS12530 () | 2568049..2569455 | - | 1407 | WP_273810518.1 | DUF4055 domain-containing protein | - |
| PS046_RS12535 () | 2569458..2570675 | - | 1218 | Protein_2456 | terminase family protein | - |
| PS046_RS12540 () | 2570807..2571658 | + | 852 | WP_273810517.1 | HNH endonuclease | - |
| PS046_RS12545 () | 2571748..2572854 | - | 1107 | WP_273810516.1 | terminase small subunit | - |
| PS046_RS12550 () | 2572858..2573067 | - | 210 | WP_048969766.1 | hypothetical protein | - |
| PS046_RS12555 () | 2573045..2573977 | - | 933 | WP_048969767.1 | hypothetical protein | - |
| PS046_RS12560 () | 2574501..2574758 | - | 258 | Protein_2461 | ParB/Srx family N-terminal domain-containing protein | - |
| PS046_RS12565 () | 2575042..2575320 | - | 279 | WP_224543230.1 | hypothetical protein | - |
| PS046_RS12570 () | 2575205..2575585 | - | 381 | WP_059268182.1 | DUF2570 domain-containing protein | - |
| PS046_RS12575 () | 2575569..2576045 | - | 477 | WP_047655280.1 | glycoside hydrolase family protein | - |
| PS046_RS12580 () | 2576049..2576384 | - | 336 | WP_001766841.1 | phage holin, lambda family | - |
| PS046_RS12585 () | 2576882..2577424 | - | 543 | WP_262928907.1 | DUF1133 family protein | - |
| PS046_RS12590 () | 2577421..2577711 | - | 291 | WP_000228020.1 | DUF1364 domain-containing protein | - |
| PS046_RS12595 () | 2577711..2578310 | - | 600 | WP_273811879.1 | DUF1367 family protein | - |
| PS046_RS12600 () | 2578466..2578543 | - | 78 | Protein_2469 | hypothetical protein | - |
| PS046_RS12605 () | 2578796..2578951 | - | 156 | WP_000813269.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2578963..2579021 | + | 59 | - | - | Antitoxin Detail |
| PS046_RS12610 () | 2579379..2580311 | + | 933 | WP_059259885.1 | hypothetical protein | - |
| PS046_RS12615 () | 2580308..2580862 | + | 555 | WP_024229929.1 | hypothetical protein | - |
| PS046_RS12620 () | 2580996..2581307 | - | 312 | WP_032320575.1 | hypothetical protein | - |
| PS046_RS12625 () | 2581294..2581557 | - | 264 | WP_024229931.1 | hypothetical protein | - |
| PS046_RS12630 () | 2581554..2581970 | - | 417 | WP_024229932.1 | DUF977 family protein | - |
| PS046_RS12635 () | 2581978..2582739 | - | 762 | WP_074464991.1 | DUF1627 domain-containing protein | - |
| PS046_RS12640 () | 2582762..2583508 | - | 747 | WP_273811888.1 | ATP-binding protein | - |
| PS046_RS12645 () | 2583515..2584303 | - | 789 | WP_059277330.1 | hypothetical protein | - |
| PS046_RS12650 () | 2584381..2584803 | - | 423 | WP_059259889.1 | toxin YdaT family protein | - |
| PS046_RS12655 () | 2584787..2585062 | - | 276 | WP_059259890.1 | YdaS family helix-turn-helix protein | - |
| PS046_RS12660 () | 2585171..2585632 | + | 462 | WP_000753628.1 | helix-turn-helix domain-containing protein | - |
| PS046_RS12665 () | 2585882..2586016 | + | 135 | WP_072248140.1 | hypothetical protein | - |
| PS046_RS12670 () | 2586027..2586182 | + | 156 | WP_053087084.1 | DUF1391 family protein | - |
| PS046_RS12675 () | 2586179..2586668 | - | 490 | Protein_2484 | superinfection exclusion B family protein | - |
| PS046_RS12680 () | 2587108..2587329 | + | 222 | WP_048969779.1 | cell division protein FtsZ | - |
| PS046_RS12685 () | 2587329..2587499 | + | 171 | WP_076735224.1 | YdaE family protein | - |
| PS046_RS12690 () | 2587574..2587849 | + | 276 | WP_044805262.1 | hypothetical protein | - |
| PS046_RS12695 () | 2587951..2590302 | + | 2352 | WP_273811896.1 | exonuclease | - |
| PS046_RS12700 () | 2590329..2591900 | - | 1572 | WP_273811898.1 | IS66 family transposase ISCro1 | Transposase |
| PS046_RS12705 () | 2591920..2592267 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| PS046_RS12710 () | 2592267..2592944 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| PS046_RS12715 () | 2592998..2593804 | + | 807 | Protein_2492 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PS046_RS12720 () | 2593816..2594868 | + | 1053 | WP_273811900.1 | RecT family recombinase | - |
| PS046_RS12725 () | 2594933..2595127 | + | 195 | WP_048969782.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| PS046_RS12730 () | 2595120..2595308 | + | 189 | WP_048969783.1 | DUF1187 family protein | - |
| - () | 2595126..2595303 | - | 178 | NuclAT_0 | - | - |
| - () | 2595126..2595303 | - | 178 | NuclAT_0 | - | - |
| - () | 2595126..2595303 | - | 178 | NuclAT_0 | - | - |
| - () | 2595126..2595303 | - | 178 | NuclAT_0 | - | - |
| PS046_RS12735 () | 2595408..2595623 | + | 216 | WP_048969784.1 | excisionase XisR | - |
| PS046_RS12740 () | 2595625..2596860 | + | 1236 | WP_059277326.1 | Putative defective protein IntQ ; Integrase | Integrase |
| PS046_RS12745 () | 2596912..2597847 | + | 936 | WP_044712357.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| PS046_RS12750 () | 2597950..2599323 | - | 1374 | WP_059235732.1 | ATP-dependent RNA helicase DbpA | - |
| PS046_RS12755 () | 2599353..2599526 | - | 174 | WP_032275239.1 | protein YnaL | - |
| PS046_RS12760 () | 2599801..2600784 | - | 984 | WP_000387364.1 | zinc transporter ZntB | - |
| PS046_RS12765 () | 2600798..2600845 | - | 48 | WP_212741658.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|