MGE detailed information
MGE type: Prophage MGE length: 57454 bp
Accession: NZ_CP117586 Location: 2412819..2470272 Organism: Escherichia albertii strain BIA_40 Replicon: chromosome
Accession: NZ_CP117586 Location: 2412819..2470272 Organism: Escherichia albertii strain BIA_40 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS042_RS12040 () | 2408720..2409940 | + | 1221 | WP_025238980.1 | DNA-binding transcriptional repressor Mlc | - |
| PS042_RS12045 () | 2410066..2410761 | + | 696 | WP_105175376.1 | dethiobiotin synthase | - |
| PS042_RS12050 () | 2410714..2412006 | - | 1293 | WP_072244526.1 | voltage-gated ClC-type chloride channel ClcB | - |
| PS042_RS12055 () | 2412162..2412776 | - | 615 | WP_000148727.1 | Tat proofreading chaperone DmsD | - |
| PS042_RS12060 () | 2412819..2413676 | - | 858 | WP_000526527.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| PS042_RS12065 () | 2413678..2414295 | - | 618 | WP_000213046.1 | dimethylsulfoxide reductase subunit B | - |
| PS042_RS12070 () | 2414306..2416729 | - | 2424 | WP_072178975.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| PS042_RS12075 () | 2416792..2419218 | - | 2427 | WP_059218805.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| PS042_RS12080 () | 2419462..2419767 | - | 306 | WP_059218804.1 | DUF1161 domain-containing protein | - |
| PS042_RS12085 () | 2419875..2420585 | + | 711 | WP_103053564.1 | YnfC family lipoprotein | - |
| PS042_RS12090 () | 2420588..2421148 | - | 561 | WP_000606224.1 | spermidine N1-acetyltransferase | - |
| PS042_RS12095 () | 2421183..2421524 | - | 342 | WP_059218802.1 | DUF1283 family protein | - |
| PS042_RS12100 () | 2421659..2421985 | + | 327 | WP_002462117.1 | YnfA family protein | - |
| PS042_RS12105 () | 2422182..2423396 | + | 1215 | WP_010337027.1 | starvation-sensing protein RspA | - |
| PS042_RS12110 () | 2423410..2424429 | + | 1020 | WP_256875754.1 | Zn-dependent oxidoreductase | - |
| PS042_RS12115 () | 2424617..2425897 | - | 1281 | WP_000876979.1 | Putative defective protein IntQ ; Integrase | Integrase |
| PS042_RS12120 () | 2425932..2426183 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| PS042_RS12125 () | 2426256..2428727 | - | 2472 | WP_001533284.1 | exonuclease | - |
| PS042_RS12130 () | 2428821..2429012 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| PS042_RS12135 () | 2429009..2429197 | - | 189 | WP_000854561.1 | cell division inhibition protein DicB | - |
| PS042_RS12140 () | 2430158..2430259 | - | 102 | Protein_2374 | protein YdfB | - |
| PS042_RS12145 () | 2430261..2430416 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| PS042_RS12150 () | 2430609..2431016 | - | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| PS042_RS12155 () | 2431094..2431321 | + | 228 | WP_000476994.1 | Cro/CI family transcriptional regulator | - |
| PS042_RS12160 () | 2431305..2431826 | + | 522 | WP_000705349.1 | toxin YdaT family protein | - |
| PS042_RS12165 () | 2431807..2432772 | + | 966 | WP_001533283.1 | hypothetical protein | - |
| PS042_RS12170 () | 2432813..2433235 | + | 423 | WP_001599153.1 | DUF977 family protein | - |
| PS042_RS12175 () | 2433652..2434617 | + | 966 | WP_256903978.1 | hypothetical protein | - |
| - | 2435008..2435066 | - | 59 | - | - | Antitoxin Detail |
| PS042_RS12180 () | 2435078..2435233 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| PS042_RS12185 () | 2435450..2435701 | + | 252 | WP_001533277.1 | protein Rem | - |
| PS042_RS12190 () | 2435768..2436046 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| PS042_RS12195 () | 2436048..2437097 | + | 1050 | WP_001533276.1 | DUF968 domain-containing protein | - |
| PS042_RS12200 () | 2437111..2437863 | + | 753 | WP_001047139.1 | antitermination protein | - |
| PS042_RS12205 () | 2438141..2438230 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| PS042_RS12210 () | 2438285..2438497 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| PS042_RS12215 () | 2438798..2439013 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| PS042_RS12220 () | 2439376..2439546 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| PS042_RS12225 () | 2439766..2439981 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| PS042_RS12230 () | 2439986..2440297 | + | 312 | WP_000189921.1 | DUF1327 domain-containing protein | - |
| PS042_RS12235 () | 2440294..2440827 | + | 534 | WP_001092973.1 | lysozyme | - |
| PS042_RS12240 () | 2440824..2441315 | + | 492 | WP_001531699.1 | DUF2514 domain-containing protein | - |
| PS042_RS12245 () | 2441685..2441897 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| PS042_RS12250 () | 2441908..2442096 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| PS042_RS12255 () | 2442099..2442164 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| PS042_RS12260 () | 2442169..2442399 | + | 231 | WP_000720962.1 | protein YnfN | - |
| PS042_RS12265 () | 2442572..2442745 | + | 174 | WP_001019139.1 | addiction module toxin, GnsA/GnsB family | - |
| PS042_RS12270 () | 2442897..2443307 | - | 411 | WP_001531698.1 | DUF1398 domain-containing protein | - |
| PS042_RS12275 () | 2443608..2443814 | + | 207 | WP_001031431.1 | hypothetical protein | - |
| PS042_RS12280 () | 2444361..2444855 | + | 495 | WP_000373425.1 | DUF1441 family protein | - |
| PS042_RS12285 () | 2444855..2446957 | + | 2103 | WP_273775618.1 | phage terminase large subunit family protein | - |
| PS042_RS12290 () | 2446954..2447166 | + | 213 | WP_001072975.1 | hypothetical protein | - |
| PS042_RS12295 () | 2447094..2448674 | + | 1581 | WP_023908451.1 | phage portal protein | - |
| PS042_RS12300 () | 2448619..2450646 | + | 2028 | WP_001533272.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| PS042_RS12305 () | 2450733..2451056 | + | 324 | WP_001097045.1 | DUF2190 family protein | - |
| PS042_RS12310 () | 2451049..2451324 | + | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| PS042_RS12315 () | 2451336..2451914 | + | 579 | WP_001533271.1 | phage tail protein | - |
| PS042_RS12320 () | 2451911..2452312 | + | 402 | WP_001079419.1 | phage minor tail U family protein | - |
| PS042_RS12325 () | 2452323..2453066 | + | 744 | WP_001533270.1 | phage tail protein | - |
| PS042_RS12330 () | 2453127..2453513 | + | 387 | WP_001533269.1 | phage minor tail protein G | - |
| PS042_RS12335 () | 2453522..2453851 | + | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| PS042_RS12340 () | 2453823..2456887 | + | 3065 | Protein_2414 | phage tail tape measure protein | - |
| PS042_RS12345 () | 2456887..2457216 | + | 330 | WP_000447253.1 | phage tail protein | - |
| PS042_RS12350 () | 2457226..2457924 | + | 699 | WP_001533266.1 | phage minor tail protein L | - |
| PS042_RS12355 () | 2457930..2458673 | + | 744 | WP_273775623.1 | C40 family peptidase | - |
| PS042_RS12360 () | 2458670..2459218 | + | 549 | WP_000847950.1 | tail assembly protein | - |
| PS042_RS12365 () | 2459279..2462692 | + | 3414 | WP_192951197.1 | host specificity protein J | - |
| PS042_RS12370 () | 2462763..2463362 | + | 600 | WP_001230523.1 | Outer membrane protein X | VF |
| PS042_RS12375 () | 2463427..2466390 | + | 2964 | WP_001533262.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PS042_RS12380 () | 2466390..2466965 | + | 576 | WP_000885584.1 | tail fiber assembly protein | - |
| PS042_RS12385 () | 2467063..2467653 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| PS042_RS12390 () | 2467970..2468203 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| PS042_RS12395 () | 2468272..2468385 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| PS042_RS12400 () | 2468989..2470272 | + | 1284 | Protein_2426 | MHS family MFS transporter | - |
| PS042_RS12405 () | 2470362..2471822 | + | 1461 | WP_256879666.1 | mannitol dehydrogenase family protein | - |
| PS042_RS12410 () | 2471858..2472061 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| PS042_RS12415 () | 2472236..2472922 | - | 687 | WP_059236608.1 | DNA-binding transcriptional regulator rspR | - |
| PS042_RS12420 () | 2473011..2473757 | - | 747 | WP_002462120.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|