MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 86602 bp
Accession: NZ_CP117473 Location: 1..86602 Organism: Sphingobium sp. YC-XJ3 Replicon: plasmid unnamed2
Accession: NZ_CP117473 Location: 1..86602 Organism: Sphingobium sp. YC-XJ3 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PO876_RS26500 (PO876_26500) | 548..1153 | - | 606 | WP_099185149.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| PO876_RS26505 (PO876_26505) | 1301..4231 | + | 2931 | WP_007683471.1 | Tn3 family transposase TnpA_ISAzs29 | Transposase |
| PO876_RS26510 (PO876_26510) | 4260..4985 | + | 726 | WP_088813954.1 | IS6 family transposase IS6100 | Transposase |
| PO876_RS26515 (PO876_26515) | 5021..5251 | + | 231 | Protein_4 | IS3 family transposase ISSsp2 | Transposase |
| PO876_RS26520 (PO876_26520) | 5380..5655 | + | 276 | WP_235399086.1 | LysR substrate-binding domain-containing protein | - |
| PO876_RS26525 (PO876_26525) | 6086..6901 | - | 816 | WP_011607945.1 | 3-oxoadipate enol-lactonase | - |
| PO876_RS26530 (PO876_26530) | 6984..7874 | - | 891 | WP_011607944.1 | dioxygenase | - |
| PO876_RS26535 (PO876_26535) | 7900..8190 | - | 291 | WP_032073059.1 | muconolactone Delta-isomerase | - |
| PO876_RS26540 (PO876_26540) | 8192..9349 | - | 1158 | WP_032073060.1 | muconate cycloisomerase family protein | - |
| PO876_RS26545 (PO876_26545) | 9440..10348 | + | 909 | WP_011607941.1 | HTH-type transcriptional regulator BenM | VF |
| PO876_RS26550 (PO876_26550) | 10352..11125 | - | 774 | WP_011607940.1 | IclR family transcriptional regulator C-terminal domain-containing protein | - |
| PO876_RS26555 (PO876_26555) | 11233..11919 | + | 687 | WP_011607939.1 | 3-oxoacid CoA-transferase subunit A | - |
| PO876_RS26560 (PO876_26560) | 11937..12590 | + | 654 | WP_011607938.1 | 3-oxoacid CoA-transferase subunit B | - |
| PO876_RS26565 (PO876_26565) | 12590..13798 | + | 1209 | WP_011607937.1 | 3-oxoadipyl-CoA thiolase | - |
| PO876_RS26570 (PO876_26570) | 14037..14801 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| PO876_RS26575 (PO876_26575) | 14941..16761 | + | 1821 | Protein_16 | Tn3 family transposase TnpA_ISMpo10 | Transposase |
| PO876_RS26580 (PO876_26580) | 16780..17034 | - | 255 | WP_013041563.1 | hypothetical protein | - |
| PO876_RS26585 (PO876_26585) | 17456..17830 | + | 375 | WP_013041565.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PO876_RS26590 (PO876_26590) | 17827..18153 | + | 327 | WP_006964370.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| PO876_RS26595 (PO876_26595) | 18153..18395 | + | 243 | WP_013041566.1 | hypothetical protein | - |
| PO876_RS26600 (PO876_26600) | 18611..19396 | - | 786 | WP_004213209.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| PO876_RS26605 (PO876_26605) | 19393..19944 | - | 552 | WP_004213210.1 | Tn3 family transposase ISPsy42 | Transposase |
| PO876_RS26610 (PO876_26610) | 20084..23041 | + | 2958 | WP_031286087.1 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| PO876_RS26615 (PO876_26615) | 23135..23290 | + | 156 | WP_231634720.1 | hypothetical protein | - |
| PO876_RS26620 (PO876_26620) | 23311..24423 | - | 1113 | WP_013041568.1 | hypothetical protein | VF |
| PO876_RS26625 (PO876_26625) | 24426..26141 | - | 1716 | WP_026149856.1 | P-type conjugative transfer protein TrbL | - |
| PO876_RS26630 (PO876_26630) | 26152..26394 | - | 243 | WP_019053956.1 | EexN family lipoprotein | - |
| PO876_RS26635 (PO876_26635) | 26404..27159 | - | 756 | WP_022675885.1 | P-type conjugative transfer protein TrbJ | - |
| PO876_RS26640 (PO876_26640) | 27185..28534 | - | 1350 | WP_019053954.1 | Type IV secretion system protein virB10 | VF |
| PO876_RS26645 (PO876_26645) | 28565..29338 | - | 774 | WP_019053953.1 | SPOR domain-containing protein | - |
| PO876_RS26650 (PO876_26650) | 29341..30324 | - | 984 | WP_006964392.1 | P-type conjugative transfer protein TrbG | - |
| PO876_RS26655 (PO876_26655) | 30342..31061 | - | 720 | WP_006964394.1 | VirB8/TrbF family protein | - |
| PO876_RS26660 (PO876_26660) | 31048..33627 | - | 2580 | WP_019053952.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| PO876_RS26665 (PO876_26665) | 33624..33956 | - | 333 | WP_026149854.1 | conjugal transfer protein TrbD | - |
| PO876_RS26670 (PO876_26670) | 33975..34355 | - | 381 | WP_006964400.1 | TrbC/VirB2 family protein | - |
| PO876_RS26675 (PO876_26675) | 34369..35334 | - | 966 | WP_026149853.1 | Type IV secretion system protein PtlH | VF |
| PO876_RS26680 (PO876_26680) | 35441..35818 | - | 378 | WP_026149852.1 | helix-turn-helix domain-containing protein | - |
| PO876_RS26685 (PO876_26685) | 36356..36595 | + | 240 | WP_019053948.1 | hypothetical protein | - |
| PO876_RS26690 (PO876_26690) | 36774..37541 | + | 768 | WP_006954207.1 | GntR family transcriptional regulator | - |
| PO876_RS26695 (PO876_26695) | 37881..38294 | + | 414 | WP_006954205.1 | antirestriction protein | - |
| PO876_RS26700 (PO876_26700) | 38399..38662 | + | 264 | WP_006954203.1 | hypothetical protein | - |
| PO876_RS26705 (PO876_26705) | 38852..39097 | + | 246 | WP_244309921.1 | KleE stable inheritance protein | - |
| PO876_RS26710 (PO876_26710) | 39102..39389 | + | 288 | WP_006954199.1 | TrfB-related DNA-binding protein | - |
| PO876_RS26715 (PO876_26715) | 39386..40132 | + | 747 | WP_019053943.1 | Chromosome-partitioning ATPase Soj | VF |
| PO876_RS26720 (PO876_26720) | 40135..41157 | + | 1023 | WP_019053942.1 | ParB/RepB/Spo0J family partition protein | - |
| PO876_RS26725 (PO876_26725) | 41275..41907 | + | 633 | WP_019053941.1 | hypothetical protein | - |
| PO876_RS26730 (PO876_26730) | 41938..42378 | - | 441 | WP_019053940.1 | hypothetical protein | - |
| PO876_RS26735 (PO876_26735) | 42378..43103 | - | 726 | WP_026149851.1 | ArsA-related P-loop ATPase | - |
| PO876_RS26740 (PO876_26740) | 43801..44187 | + | 387 | WP_006954189.1 | IncP-type oriT-binding protein TraJ | - |
| PO876_RS26745 (PO876_26745) | 44204..46522 | + | 2319 | WP_019053938.1 | Protein TraI | Relaxase |
| PO876_RS26750 (PO876_26750) | 46544..48436 | + | 1893 | WP_026149850.1 | Conjugal transfer protein TraG | VF |
| PO876_RS26755 (PO876_26755) | 48433..48966 | + | 534 | WP_006954186.1 | conjugative transfer signal peptidase TraF | - |
| PO876_RS26760 (PO876_26760) | 48971..51151 | + | 2181 | WP_019053936.1 | DNA topoisomerase 3 | - |
| PO876_RS26765 (PO876_26765) | 51148..51399 | + | 252 | WP_006954184.1 | hypothetical protein | - |
| PO876_RS26770 (PO876_26770) | 51418..54777 | + | 3360 | WP_019053935.1 | zincin-like metallopeptidase domain-containing protein | - |
| PO876_RS26775 (PO876_26775) | 54779..55180 | - | 402 | WP_019053934.1 | hypothetical protein | - |
| PO876_RS26780 (PO876_26780) | 55309..55452 | + | 144 | WP_231382153.1 | helix-turn-helix transcriptional regulator | - |
| PO876_RS26785 (PO876_26785) | 55608..56810 | - | 1203 | WP_026149849.1 | IS256 family transposase ISAli6 | Transposase |
| PO876_RS26790 (PO876_26790) | 57034..57183 | + | 150 | WP_006954178.1 | hypothetical protein | - |
| PO876_RS26795 (PO876_26795) | 57194..57358 | - | 165 | WP_019053931.1 | hypothetical protein | - |
| PO876_RS26800 (PO876_26800) | 57576..58280 | - | 705 | WP_014194362.1 | DNA adenine methylase | - |
| PO876_RS26805 (PO876_26805) | 58429..59505 | - | 1077 | WP_019053930.1 | hypothetical protein | - |
| PO876_RS26810 (PO876_26810) | 60010..60246 | - | 237 | WP_006954175.1 | hypothetical protein | - |
| PO876_RS26815 (PO876_26815) | 60265..60897 | - | 633 | Protein_64 | SprT-like domain-containing protein | - |
| PO876_RS26820 (PO876_26820) | 60960..61724 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| PO876_RS26825 (PO876_26825) | 61775..61993 | + | 219 | Protein_66 | IS6 family transposase | - |
| PO876_RS26830 (PO876_26830) | 62097..62576 | - | 480 | WP_037523468.1 | flavin reductase family protein | - |
| PO876_RS26835 (PO876_26835) | 62569..63192 | - | 624 | WP_030540716.1 | FAD synthetase family protein | - |
| PO876_RS26840 (PO876_26840) | 63259..64812 | - | 1554 | WP_030540715.1 | 4-nitrophenol 2-monooxygenase, oxygenase component | VF |
| PO876_RS26845 (PO876_26845) | 64962..65708 | + | 747 | WP_037523465.1 | IclR family transcriptional regulator C-terminal domain-containing protein | - |
| PO876_RS26850 (PO876_26850) | 65760..66671 | - | 912 | WP_037523462.1 | HTH-type transcriptional regulator BenM | VF |
| PO876_RS26855 (PO876_26855) | 66791..66934 | - | 144 | Protein_72 | IS3 family transposase | - |
| PO876_RS26860 (PO876_26860) | 66982..67344 | - | 363 | Protein_73 | IS6 family transposase IS6100 | Transposase |
| PO876_RS26865 (PO876_26865) | 67398..68162 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| PO876_RS26870 (PO876_26870) | 68461..70173 | - | 1713 | WP_169863543.1 | hypothetical protein | - |
| PO876_RS26875 (PO876_26875) | 70352..71155 | - | 804 | WP_010408980.1 | enoyl-CoA hydratase/isomerase family protein | - |
| PO876_RS26880 (PO876_26880) | 71155..71961 | - | 807 | WP_006949676.1 | putative 2,4-dienoyl-CoA reductase | VF |
| PO876_RS26885 (PO876_26885) | 72010..73473 | - | 1464 | WP_010408992.1 | phosphotransferase | - |
| PO876_RS26890 (PO876_26890) | 73836..75971 | - | 2136 | WP_274054827.1 | Pesticin receptor | VF |
| PO876_RS26895 (PO876_26895) | 76245..77594 | + | 1350 | WP_274054830.1 | IS1380 family transposase ISSp1 | Transposase |
| PO876_RS26900 (PO876_26900) | 77841..78605 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| PO876_RS26905 (PO876_26905) | 78842..79038 | + | 197 | Protein_82 | hypothetical protein | - |
| PO876_RS26910 (PO876_26910) | 79032..79196 | + | 165 | Protein_83 | catechol 2,3-dioxygenase | - |
| PO876_RS26915 (PO876_26915) | 79254..80369 | + | 1116 | WP_169863549.1 | MBL fold metallo-hydrolase | - |
| PO876_RS26920 (PO876_26920) | 80472..81302 | + | 831 | WP_042920722.1 | phosphatase PAP2 family protein | - |
| PO876_RS26925 (PO876_26925) | 81350..81481 | - | 132 | WP_256671459.1 | hypothetical protein | - |
| PO876_RS26930 (PO876_26930) | 81478..82689 | - | 1212 | WP_169863551.1 | ISL3 family transposase ISAeme19 | Transposase |
| PO876_RS26935 (PO876_26935) | 82688..83122 | + | 435 | WP_169863552.1 | heme-binding protein | - |
| PO876_RS26940 (PO876_26940) | 83172..84098 | + | 927 | Protein_89 | aldehyde dehydrogenase family protein | - |
| PO876_RS26945 (PO876_26945) | 84132..84689 | - | 558 | Protein_90 | Tn3 family transposase TnpA_ISShes11 | Transposase |
| PO876_RS26950 (PO876_26950) | 84751..85158 | + | 408 | Protein_91 | IS6 family transposase IS6100 | Transposase |
| PO876_RS26955 (PO876_26955) | 85219..85629 | + | 411 | Protein_92 | IS6 family transposase IS6100 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|