MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 117219 bp
Accession: NZ_CP117471 Location: 368513..485731 Organism: Sphingobium sp. YC-XJ3 Replicon: chromosome
Accession: NZ_CP117471 Location: 368513..485731 Organism: Sphingobium sp. YC-XJ3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PO876_RS01705 (PO876_01705) | 363673..364062 | + | 390 | WP_083199102.1 | endonuclease domain-containing protein | - |
| PO876_RS01710 (PO876_01710) | 364059..365957 | + | 1899 | WP_044661812.1 | acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha | - |
| PO876_RS01715 (PO876_01715) | 365957..366409 | + | 453 | WP_044661813.1 | MaoC family dehydratase | - |
| PO876_RS01720 (PO876_01720) | 366406..367242 | + | 837 | WP_044661814.1 | CoA ester lyase | - |
| PO876_RS01725 (PO876_01725) | 367280..368227 | - | 948 | WP_044661815.1 | DUF2171 domain-containing protein | - |
| PO876_RS01735 (PO876_01735) | 368833..369537 | + | 705 | WP_206377341.1 | DUF2384 domain-containing protein | - |
| PO876_RS01740 (PO876_01740) | 370317..371438 | - | 1122 | WP_169576418.1 | rod shape-determining protein RodA | - |
| PO876_RS01745 (PO876_01745) | 371579..371800 | - | 222 | WP_169576420.1 | hypothetical protein | - |
| PO876_RS01750 (PO876_01750) | 372078..372614 | - | 537 | WP_274054330.1 | Peptidoglycan-associated lipoprotein | VF |
| PO876_RS01755 (PO876_01755) | 372972..373253 | - | 282 | Protein_344 | Peptidoglycan-associated lipoprotein | VF |
| PO876_RS01760 (PO876_01760) | 373539..375569 | + | 2031 | WP_169576423.1 | lytic transglycosylase domain-containing protein | - |
| PO876_RS01765 (PO876_01765) | 375925..378975 | + | 3051 | WP_274051865.1 | transglycosylase domain-containing protein | - |
| PO876_RS01770 (PO876_01770) | 379261..380343 | + | 1083 | WP_274051867.1 | mechanosensitive ion channel | - |
| PO876_RS01775 (PO876_01775) | 380355..380819 | + | 465 | WP_169576428.1 | hypothetical protein | - |
| PO876_RS01780 (PO876_01780) | 381055..382551 | + | 1497 | WP_169576430.1 | SulP family inorganic anion transporter | - |
| PO876_RS01785 (PO876_01785) | 382604..384166 | - | 1563 | WP_169576432.1 | DUF389 domain-containing protein | - |
| PO876_RS01790 (PO876_01790) | 384316..385518 | + | 1203 | WP_169576520.1 | Na+/H+ antiporter NhaA | - |
| PO876_RS01795 (PO876_01795) | 385511..386809 | + | 1299 | WP_274054332.1 | chloride channel protein | - |
| PO876_RS01800 (PO876_01800) | 386862..387362 | - | 501 | WP_240962504.1 | hypothetical protein | VF |
| PO876_RS01805 (PO876_01805) | 387629..388129 | + | 501 | WP_169576438.1 | diaminobutyrate acetyltransferase | - |
| PO876_RS01810 (PO876_01810) | 388134..389444 | + | 1311 | WP_169576440.1 | Diaminobutyrate--2-oxoglutarate transaminase | VF |
| PO876_RS01815 (PO876_01815) | 389464..389877 | + | 414 | WP_169576441.1 | ectoine synthase | - |
| PO876_RS01820 (PO876_01820) | 389904..390824 | + | 921 | WP_169576442.1 | ectoine hydroxylase | - |
| PO876_RS01825 (PO876_01825) | 390821..392263 | + | 1443 | WP_169576443.1 | aspartate kinase | - |
| PO876_RS01830 (PO876_01830) | 392283..393518 | + | 1236 | WP_240962505.1 | MFS transporter | - |
| PO876_RS01835 (PO876_01835) | 393515..394846 | + | 1332 | WP_169576447.1 | MFS transporter | - |
| PO876_RS01840 (PO876_01840) | 394843..396099 | + | 1257 | WP_169576449.1 | mechanosensitive ion channel | - |
| PO876_RS01845 (PO876_01845) | 396072..397469 | - | 1398 | WP_169576451.1 | trehalose-6-phosphate synthase | - |
| PO876_RS01850 (PO876_01850) | 397466..398137 | - | 672 | WP_274051884.1 | pirin family protein | - |
| PO876_RS01855 (PO876_01855) | 398206..398892 | - | 687 | WP_169576454.1 | KDP operon transcriptional regulatory protein KdpE | VF |
| PO876_RS01860 (PO876_01860) | 398889..400427 | - | 1539 | WP_274051886.1 | ATP-binding protein | - |
| PO876_RS01865 (PO876_01865) | 400657..401094 | + | 438 | WP_240962506.1 | response regulator | - |
| PO876_RS01870 (PO876_01870) | 401199..401897 | + | 699 | WP_169576457.1 | hypothetical protein | - |
| PO876_RS01875 (PO876_01875) | 402077..402520 | + | 444 | WP_169576459.1 | potassium channel family protein | - |
| PO876_RS01880 (PO876_01880) | 402792..404522 | + | 1731 | WP_274051894.1 | SLC13 family permease | - |
| PO876_RS01885 (PO876_01885) | 404536..406107 | + | 1572 | WP_274051896.1 | right-handed parallel beta-helix repeat-containing protein | - |
| PO876_RS01890 (PO876_01890) | 406194..407405 | + | 1212 | WP_169576464.1 | hypothetical protein | - |
| PO876_RS01895 (PO876_01895) | 407536..410601 | - | 3066 | WP_169576465.1 | hypothetical protein | VF |
| PO876_RS01900 (PO876_01900) | 411055..411939 | - | 885 | WP_169576467.1 | MBL fold metallo-hydrolase | - |
| PO876_RS01905 (PO876_01905) | 411998..412312 | + | 315 | WP_169576469.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| PO876_RS01910 (PO876_01910) | 412317..412838 | + | 522 | WP_169576470.1 | rhodanese family protein | - |
| PO876_RS01915 (PO876_01915) | 412858..413670 | + | 813 | WP_274051902.1 | sulfite exporter TauE/SafE family protein | - |
| PO876_RS01925 (PO876_01925) | 415989..416429 | + | 441 | WP_240962509.1 | hypothetical protein | - |
| PO876_RS01930 (PO876_01930) | 416413..420147 | - | 3735 | WP_169576472.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PO876_RS01935 (PO876_01935) | 420161..421516 | - | 1356 | WP_274051912.1 | conjugal transfer protein TraH | - |
| PO876_RS01940 (PO876_01940) | 421749..422858 | + | 1110 | WP_274051915.1 | ATP-binding protein | - |
| PO876_RS01945 (PO876_01945) | 422879..423376 | - | 498 | WP_274051917.1 | hypothetical protein | - |
| PO876_RS01950 (PO876_01950) | 423451..424281 | - | 831 | WP_274054334.1 | conjugal transfer protein TraF | - |
| PO876_RS01955 (PO876_01955) | 424314..424913 | - | 600 | WP_274051920.1 | S26 family signal peptidase | - |
| PO876_RS01960 (PO876_01960) | 424885..425700 | - | 816 | WP_274051922.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PO876_RS01965 (PO876_01965) | 425705..426790 | - | 1086 | WP_274051925.1 | conjugal transfer protein TraN | - |
| PO876_RS01970 (PO876_01970) | 426787..428724 | - | 1938 | WP_274051927.1 | hypothetical protein | - |
| PO876_RS01975 (PO876_01975) | 429104..430117 | - | 1014 | WP_274051929.1 | TraU family protein | - |
| PO876_RS01980 (PO876_01980) | 430114..430686 | - | 573 | WP_274054336.1 | conjugal transfer protein TraW | - |
| PO876_RS01985 (PO876_01985) | 430969..431298 | - | 330 | WP_274051931.1 | hypothetical protein | - |
| PO876_RS01990 (PO876_01990) | 431298..433829 | - | 2532 | WP_274051933.1 | TraC family protein | - |
| PO876_RS01995 (PO876_01995) | 433826..434335 | - | 510 | WP_274054338.1 | TraV family lipoprotein | - |
| PO876_RS02000 (PO876_02000) | 434464..435732 | - | 1269 | WP_274054340.1 | TraB/VirB10 family protein | - |
| PO876_RS02005 (PO876_02005) | 435837..436604 | - | 768 | WP_274051935.1 | type-F conjugative transfer system secretin TraK | - |
| PO876_RS02010 (PO876_02010) | 436588..437136 | - | 549 | Protein_395 | TraE/TraK family type IV conjugative transfer system protein | - |
| PO876_RS02015 (PO876_02015) | 437314..438042 | - | 729 | WP_031304487.1 | IS21 family transposase ISSsp4 | Transposase |
| PO876_RS02020 (PO876_02020) | 438029..439543 | - | 1515 | WP_021238707.1 | IS21 family transposase ISSsp4 | Transposase |
| PO876_RS02025 (PO876_02025) | 439659..440183 | - | 525 | Protein_398 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PO876_RS02030 (PO876_02030) | 440180..441535 | - | 1356 | WP_009823940.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PO876_RS02035 (PO876_02035) | 441532..442764 | - | 1233 | WP_007015824.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PO876_RS02040 (PO876_02040) | 442922..445018 | + | 2097 | WP_274051978.1 | strawberry notch C-terminal domain-containing protein | - |
| PO876_RS02045 (PO876_02045) | 445133..445378 | + | 246 | WP_274051980.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| PO876_RS02050 (PO876_02050) | 445371..445661 | + | 291 | WP_274051983.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PO876_RS02055 (PO876_02055) | 445844..447523 | + | 1680 | WP_274051985.1 | ATP-binding protein | - |
| PO876_RS02060 (PO876_02060) | 447630..448820 | + | 1191 | WP_274051987.1 | DUF932 domain-containing protein | - |
| PO876_RS02065 (PO876_02065) | 448875..449456 | + | 582 | WP_274051988.1 | hypothetical protein | - |
| PO876_RS02070 (PO876_02070) | 449518..449820 | + | 303 | WP_274051989.1 | hypothetical protein | - |
| PO876_RS02075 (PO876_02075) | 449842..450537 | + | 696 | WP_274051991.1 | hypothetical protein | - |
| PO876_RS02080 (PO876_02080) | 450867..451220 | - | 354 | WP_274051994.1 | DUF4186 domain-containing protein | - |
| PO876_RS02085 (PO876_02085) | 451375..451650 | - | 276 | WP_274051996.1 | HU family DNA-binding protein | - |
| PO876_RS02090 (PO876_02090) | 451903..452706 | + | 804 | WP_274051998.1 | fructosamine kinase family protein | - |
| PO876_RS02095 (PO876_02095) | 453023..459022 | + | 6000 | WP_274052000.1 | hypothetical protein | - |
| PO876_RS02100 (PO876_02100) | 459163..459342 | + | 180 | WP_274052002.1 | hypothetical protein | - |
| PO876_RS02105 (PO876_02105) | 459339..459938 | + | 600 | WP_274052004.1 | hypothetical protein | - |
| PO876_RS02110 (PO876_02110) | 460373..460765 | + | 393 | WP_025547129.1 | IS66 family transposase ISRel19 | Transposase |
| PO876_RS02115 (PO876_02115) | 460768..461118 | + | 351 | WP_274054343.1 | IS66 family transposase ISPre3 | Transposase |
| PO876_RS02120 (PO876_02120) | 461186..462781 | + | 1596 | WP_150295624.1 | IS66 family transposase ISAzs21 | Transposase |
| PO876_RS02125 (PO876_02125) | 462778..463371 | + | 594 | WP_025547125.1 | plasmid pRiA4b ORF-3 family protein | - |
| PO876_RS02130 (PO876_02130) | 463341..463574 | + | 234 | WP_274052014.1 | hypothetical protein | - |
| PO876_RS02135 (PO876_02135) | 463902..464363 | + | 462 | WP_274054344.1 | DUF736 domain-containing protein | - |
| PO876_RS02140 (PO876_02140) | 464458..465468 | + | 1011 | WP_274052016.1 | DUF2493 domain-containing protein | - |
| PO876_RS02145 (PO876_02145) | 465481..465696 | + | 216 | WP_169576556.1 | DUF6117 family protein | - |
| PO876_RS02150 (PO876_02150) | 466183..467121 | + | 939 | WP_274052020.1 | DUF2493 domain-containing protein | - |
| PO876_RS02155 (PO876_02155) | 467269..467604 | - | 336 | WP_240962520.1 | hypothetical protein | - |
| PO876_RS02160 (PO876_02160) | 468021..468368 | + | 348 | WP_274052023.1 | hypothetical protein | - |
| PO876_RS02165 (PO876_02165) | 468840..469142 | + | 303 | WP_274052025.1 | hypothetical protein | - |
| PO876_RS02170 (PO876_02170) | 469139..471148 | + | 2010 | WP_274052027.1 | type IV secretion system DNA-binding domain-containing protein | - |
| PO876_RS02175 (PO876_02175) | 471145..474081 | + | 2937 | WP_274052032.1 | MobF family relaxase | - |
| PO876_RS02180 (PO876_02180) | 474065..474601 | + | 537 | WP_274052034.1 | hypothetical protein | VF |
| PO876_RS02185 (PO876_02185) | 474801..474944 | + | 144 | WP_169576619.1 | helix-turn-helix domain-containing protein | - |
| PO876_RS02190 (PO876_02190) | 474913..475170 | + | 258 | WP_274054353.1 | hypothetical protein | - |
| PO876_RS02195 (PO876_02195) | 475346..476383 | - | 1038 | WP_274052036.1 | macro domain-containing protein | - |
| PO876_RS02200 (PO876_02200) | 476391..476993 | - | 603 | WP_274052038.1 | DUF4433 domain-containing protein | - |
| PO876_RS02205 (PO876_02205) | 477530..478713 | - | 1184 | Protein_434 | Na+/H+ antiporter NhaA | - |
| PO876_RS02210 (PO876_02210) | 478881..480185 | - | 1305 | WP_274052041.1 | SLC13 family permease | - |
| PO876_RS02215 (PO876_02215) | 480286..481155 | + | 870 | WP_274052043.1 | hypothetical protein | - |
| PO876_RS02220 (PO876_02220) | 481389..481844 | - | 456 | WP_274052045.1 | carboxymuconolactone decarboxylase family protein | - |
| PO876_RS02225 (PO876_02225) | 481983..482777 | + | 795 | WP_274052047.1 | NAD(P)H-binding protein | - |
| PO876_RS02230 (PO876_02230) | 482774..483214 | + | 441 | WP_274052050.1 | hypothetical protein | - |
| PO876_RS02235 (PO876_02235) | 483201..484100 | + | 900 | WP_274052052.1 | sigma-70 family RNA polymerase sigma factor | - |
| PO876_RS02240 (PO876_02240) | 484227..485501 | - | 1275 | WP_274052055.1 | Prophage integrase IntS ; Integrase | Integrase |
| PO876_RS02245 (PO876_02245) | 485805..486566 | + | 762 | WP_083199106.1 | NUDIX domain-containing protein | - |
| PO876_RS02250 (PO876_02250) | 486570..487295 | + | 726 | WP_065846536.1 | extensin family protein | - |
| PO876_RS02255 (PO876_02255) | 487479..487751 | + | 273 | WP_025549276.1 | DUF4242 domain-containing protein | - |
| PO876_RS02260 (PO876_02260) | 487842..490514 | - | 2673 | WP_065846535.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|