MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 98500 bp
Accession: NZ_CP117471 Location: 3493332..3591831 Organism: Sphingobium sp. YC-XJ3 Replicon: chromosome
Accession: NZ_CP117471 Location: 3493332..3591831 Organism: Sphingobium sp. YC-XJ3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PO876_RS16905 (PO876_16905) | 3489516..3491666 | - | 2151 | WP_021243122.1 | type IV secretion system DNA-binding domain-containing protein | - |
| PO876_RS16910 (PO876_16910) | 3491839..3492138 | - | 300 | WP_013846862.1 | CopG family transcriptional regulator | - |
| PO876_RS16915 (PO876_16915) | 3492604..3492927 | + | 324 | WP_021688154.1 | hypothetical protein | - |
| PO876_RS16920 (PO876_16920) | 3493092..3494117 | - | 1026 | WP_274049370.1 | DUF2493 domain-containing protein | - |
| PO876_RS16925 (PO876_16925) | 3494199..3494678 | - | 480 | WP_021688156.1 | DUF736 domain-containing protein | - |
| PO876_RS16930 (PO876_16930) | 3495253..3495507 | - | 255 | WP_030090527.1 | DUF5818 domain-containing protein | - |
| PO876_RS16935 (PO876_16935) | 3495594..3495989 | + | 396 | WP_274049376.1 | hypothetical protein | - |
| PO876_RS16940 (PO876_16940) | 3496282..3496431 | + | 150 | WP_021688159.1 | hypothetical protein | - |
| PO876_RS16945 (PO876_16945) | 3496458..3496880 | - | 423 | WP_021688160.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| PO876_RS16950 (PO876_16950) | 3496870..3497121 | - | 252 | WP_030090526.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| PO876_RS16955 (PO876_16955) | 3497239..3497691 | - | 453 | WP_021688162.1 | hypothetical protein | - |
| PO876_RS16960 (PO876_16960) | 3497962..3498363 | - | 402 | WP_021688163.1 | hypothetical protein | - |
| PO876_RS16965 (PO876_16965) | 3498442..3498957 | - | 516 | WP_021688164.1 | hypothetical protein | - |
| PO876_RS16970 (PO876_16970) | 3499033..3499581 | - | 549 | WP_021688165.1 | hypothetical protein | - |
| PO876_RS16975 (PO876_16975) | 3499578..3499772 | - | 195 | WP_021688166.1 | hypothetical protein | - |
| PO876_RS16980 (PO876_16980) | 3499801..3499989 | - | 189 | WP_021688167.1 | hypothetical protein | - |
| PO876_RS16985 (PO876_16985) | 3500054..3500254 | - | 201 | WP_021688168.1 | hypothetical protein | - |
| PO876_RS16990 (PO876_16990) | 3500251..3500673 | - | 423 | WP_021688169.1 | hypothetical protein | - |
| PO876_RS16995 (PO876_16995) | 3500757..3501122 | - | 366 | WP_021688170.1 | DUF6283 family protein | - |
| PO876_RS17000 (PO876_17000) | 3501119..3501619 | - | 501 | WP_150113408.1 | hypothetical protein | - |
| PO876_RS17005 (PO876_17005) | 3501797..3501931 | - | 135 | WP_257721801.1 | hypothetical protein | - |
| PO876_RS17010 (PO876_17010) | 3501924..3502283 | - | 360 | WP_040714537.1 | hypothetical protein | - |
| PO876_RS17015 (PO876_17015) | 3502328..3502918 | - | 591 | WP_021688173.1 | DUF1419 domain-containing protein | - |
| PO876_RS17020 (PO876_17020) | 3502991..3504691 | - | 1701 | WP_021688174.1 | ATP-binding protein | - |
| PO876_RS17025 (PO876_17025) | 3504839..3505279 | - | 441 | WP_021688175.1 | hypothetical protein | - |
| PO876_RS17030 (PO876_17030) | 3505282..3505788 | - | 507 | WP_021688176.1 | hypothetical protein | - |
| PO876_RS17035 (PO876_17035) | 3505785..3507269 | - | 1485 | WP_021688177.1 | DUF3560 domain-containing protein | - |
| PO876_RS17040 (PO876_17040) | 3507402..3507596 | - | 195 | WP_021688178.1 | hypothetical protein | - |
| PO876_RS17045 (PO876_17045) | 3507737..3508138 | - | 402 | WP_021688179.1 | hypothetical protein | - |
| PO876_RS17050 (PO876_17050) | 3508247..3508726 | - | 480 | WP_021688180.1 | hypothetical protein | - |
| PO876_RS17055 (PO876_17055) | 3508732..3509487 | - | 756 | WP_021688181.1 | hypothetical protein | - |
| PO876_RS17060 (PO876_17060) | 3509531..3509992 | - | 462 | WP_021688182.1 | hypothetical protein | - |
| PO876_RS17065 (PO876_17065) | 3510004..3510651 | - | 648 | WP_021688183.1 | hypothetical protein | - |
| PO876_RS17070 (PO876_17070) | 3510725..3510865 | - | 141 | WP_157034366.1 | hypothetical protein | - |
| PO876_RS17075 (PO876_17075) | 3510875..3511978 | - | 1104 | WP_223308141.1 | hypothetical protein | - |
| PO876_RS17080 (PO876_17080) | 3512523..3512864 | - | 342 | WP_021688185.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| PO876_RS17085 (PO876_17085) | 3513200..3513637 | - | 438 | WP_021688186.1 | hypothetical protein | Toxin Detail |
| PO876_RS17090 (PO876_17090) | 3513724..3513969 | - | 246 | WP_021688187.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| PO876_RS17095 (PO876_17095) | 3514230..3519401 | - | 5172 | WP_274049409.1 | lactate dehydrogenase | - |
| PO876_RS17100 (PO876_17100) | 3519522..3520319 | - | 798 | WP_274049411.1 | hypothetical protein | - |
| PO876_RS17105 (PO876_17105) | 3520543..3521775 | + | 1233 | WP_048578767.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PO876_RS17110 (PO876_17110) | 3521772..3523130 | + | 1359 | WP_048578766.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PO876_RS17115 (PO876_17115) | 3523127..3524131 | + | 1005 | WP_048578765.1 | IS91 family transposase ISWz1 | Transposase |
| PO876_RS17120 (PO876_17120) | 3524133..3524594 | - | 462 | WP_274049420.1 | hypothetical protein | - |
| PO876_RS17125 (PO876_17125) | 3524591..3525082 | - | 492 | WP_021688190.1 | hypothetical protein | - |
| PO876_RS17130 (PO876_17130) | 3525143..3525427 | - | 285 | WP_021688191.1 | hypothetical protein | - |
| PO876_RS17135 (PO876_17135) | 3525424..3525699 | - | 276 | WP_013846907.1 | hypothetical protein | - |
| PO876_RS17140 (PO876_17140) | 3525812..3526570 | - | 759 | WP_021688193.1 | PRTRC system ThiF family protein | - |
| PO876_RS17145 (PO876_17145) | 3526560..3527219 | - | 660 | WP_021688194.1 | PRTRC system protein A | - |
| PO876_RS17150 (PO876_17150) | 3527216..3528046 | - | 831 | WP_021688195.1 | PRTRC system protein B | - |
| PO876_RS17155 (PO876_17155) | 3528055..3529002 | - | 948 | WP_021688196.1 | hypothetical protein | - |
| PO876_RS17160 (PO876_17160) | 3529222..3529428 | - | 207 | WP_013846912.1 | PRTRC system protein C | - |
| PO876_RS17165 (PO876_17165) | 3529478..3529915 | - | 438 | WP_013846913.1 | PRTRC system protein E | - |
| PO876_RS17170 (PO876_17170) | 3529953..3531590 | - | 1638 | WP_021688197.1 | PRTRC system ParB family protein | - |
| PO876_RS17175 (PO876_17175) | 3531627..3532607 | - | 981 | WP_021688198.1 | toprim domain-containing protein | - |
| PO876_RS17180 (PO876_17180) | 3532792..3533139 | - | 348 | WP_021688199.1 | hypothetical protein | - |
| PO876_RS17185 (PO876_17185) | 3533908..3535143 | + | 1236 | WP_103000296.1 | Prophage integrase IntS ; Integrase | Integrase |
| PO876_RS17190 (PO876_17190) | 3535196..3535399 | - | 204 | WP_103000295.1 | AlpA family transcriptional regulator | - |
| PO876_RS17195 (PO876_17195) | 3535891..3536271 | + | 381 | WP_274054135.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PO876_RS17200 (PO876_17200) | 3536249..3536581 | + | 333 | WP_172451799.1 | DNA-binding transcriptional regulator | - |
| PO876_RS17205 (PO876_17205) | 3536702..3537226 | + | 525 | WP_103000294.1 | GNAT family N-acetyltransferase | - |
| PO876_RS17210 (PO876_17210) | 3537341..3537532 | - | 192 | WP_103000293.1 | hypothetical protein | - |
| PO876_RS17215 (PO876_17215) | 3537666..3537815 | + | 150 | WP_274049439.1 | hypothetical protein | - |
| PO876_RS17220 (PO876_17220) | 3537897..3538307 | + | 411 | WP_274049441.1 | hypothetical protein | - |
| PO876_RS17225 (PO876_17225) | 3538304..3539827 | + | 1524 | WP_103000291.1 | HEPN domain-containing protein | - |
| PO876_RS17230 (PO876_17230) | 3539824..3540054 | - | 231 | WP_103000290.1 | conjugal transfer protein TraD | - |
| PO876_RS17235 (PO876_17235) | 3540077..3540382 | - | 306 | WP_103000289.1 | conjugal transfer protein TraD | - |
| PO876_RS17240 (PO876_17240) | 3540556..3543546 | + | 2991 | WP_103000288.1 | Ti-type conjugative transfer relaxase TraA | - |
| PO876_RS17245 (PO876_17245) | 3543558..3544259 | + | 702 | WP_103000287.1 | DUF6118 family protein | - |
| PO876_RS17250 (PO876_17250) | 3544405..3544473 | + | 69 | Protein_3402 | hypothetical protein | - |
| PO876_RS17255 (PO876_17255) | 3544568..3544936 | + | 369 | WP_253257928.1 | phosphoribosyltransferase family protein | - |
| PO876_RS17260 (PO876_17260) | 3545129..3546253 | - | 1125 | WP_103000286.1 | ABC transporter permease | - |
| PO876_RS17265 (PO876_17265) | 3546255..3549026 | - | 2772 | WP_103000285.1 | Ribosome-associated ATPase | VF |
| PO876_RS17270 (PO876_17270) | 3549023..3550096 | - | 1074 | WP_103000284.1 | hypothetical protein | VF |
| PO876_RS17275 (PO876_17275) | 3550093..3551610 | - | 1518 | WP_274049452.1 | Cation efflux system protein CusC | VF |
| PO876_RS17280 (PO876_17280) | 3551664..3552104 | - | 441 | WP_103000282.1 | hypothetical protein | - |
| PO876_RS17285 (PO876_17285) | 3552207..3552935 | - | 729 | WP_103000323.1 | Acetoacetyl-CoA reductase | VF |
| PO876_RS17290 (PO876_17290) | 3552998..3553801 | + | 804 | WP_274049457.1 | TetR/AcrR family transcriptional regulator | - |
| PO876_RS17295 (PO876_17295) | 3553978..3554100 | - | 123 | WP_274049459.1 | hypothetical protein | - |
| PO876_RS17300 (PO876_17300) | 3554126..3554587 | - | 462 | WP_253257925.1 | MarR family transcriptional regulator | - |
| PO876_RS17305 (PO876_17305) | 3554598..3555023 | - | 426 | WP_103000280.1 | organic hydroperoxide resistance protein | - |
| PO876_RS17310 (PO876_17310) | 3555386..3556132 | + | 747 | WP_103000321.1 | 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase | VF |
| PO876_RS17315 (PO876_17315) | 3556167..3556889 | + | 723 | WP_103000279.1 | Acetoacetyl-CoA reductase | VF |
| PO876_RS17320 (PO876_17320) | 3556922..3558106 | + | 1185 | WP_103000278.1 | acetyl-CoA C-acyltransferase | - |
| PO876_RS17325 (PO876_17325) | 3558177..3559001 | + | 825 | WP_103000277.1 | Lipopolysaccharide export system ATP-binding protein LptB | VF |
| PO876_RS17330 (PO876_17330) | 3559086..3560843 | + | 1758 | WP_172451798.1 | alpha/beta fold hydrolase | - |
| PO876_RS17335 (PO876_17335) | 3560847..3562271 | + | 1425 | WP_274049468.1 | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase | - |
| PO876_RS17340 (PO876_17340) | 3562268..3563470 | + | 1203 | WP_274049470.1 | acetate/propionate family kinase | - |
| PO876_RS17345 (PO876_17345) | 3563467..3564240 | + | 774 | WP_103000274.1 | Enoyl-[acyl-carrier-protein] reductase [NADH] FabI | VF |
| PO876_RS17350 (PO876_17350) | 3564237..3565454 | + | 1218 | WP_274049474.1 | phospholipase A | - |
| PO876_RS17355 (PO876_17355) | 3565451..3565936 | + | 486 | WP_103000273.1 | hypothetical protein | - |
| PO876_RS17360 (PO876_17360) | 3566070..3567032 | + | 963 | WP_274049478.1 | IS5 family transposase ISPpu21 | Transposase |
| PO876_RS17365 (PO876_17365) | 3567106..3567705 | + | 600 | WP_274049481.1 | hypothetical protein | - |
| PO876_RS17370 (PO876_17370) | 3567879..3568337 | + | 459 | WP_146032570.1 | aspartyl protease family protein | - |
| PO876_RS17375 (PO876_17375) | 3568499..3568795 | + | 297 | WP_103000271.1 | hypothetical protein | - |
| PO876_RS17380 (PO876_17380) | 3569176..3570312 | - | 1137 | WP_021246312.1 | Putative defective protein IntQ ; Integrase | Integrase |
| PO876_RS17385 (PO876_17385) | 3570273..3570476 | - | 204 | WP_021246311.1 | excisionase | - |
| PO876_RS17390 (PO876_17390) | 3571233..3571901 | - | 669 | WP_021690788.1 | MobA/MobL family protein | - |
| PO876_RS17395 (PO876_17395) | 3571975..3572364 | - | 390 | WP_021246309.1 | helix-turn-helix domain-containing protein | - |
| PO876_RS17400 (PO876_17400) | 3572814..3573119 | + | 306 | WP_037484342.1 | hypothetical protein | - |
| PO876_RS17405 (PO876_17405) | 3573106..3573888 | + | 783 | WP_021246307.1 | DsbC family protein | - |
| PO876_RS17410 (PO876_17410) | 3574070..3574387 | + | 318 | WP_013846818.1 | hypothetical protein | - |
| PO876_RS17415 (PO876_17415) | 3574524..3574790 | + | 267 | WP_013846819.1 | type IV conjugative transfer system protein TraL | - |
| PO876_RS17420 (PO876_17420) | 3574799..3575437 | + | 639 | WP_021246306.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| PO876_RS17425 (PO876_17425) | 3575457..3576188 | + | 732 | WP_047168203.1 | type-F conjugative transfer system secretin TraK | - |
| PO876_RS17430 (PO876_17430) | 3576185..3577498 | + | 1314 | WP_021246304.1 | TraB/VirB10 family protein | - |
| PO876_RS17435 (PO876_17435) | 3577534..3578121 | + | 588 | WP_031291881.1 | TraV family lipoprotein | - |
| PO876_RS17440 (PO876_17440) | 3578118..3580634 | + | 2517 | WP_021246302.1 | TraC family protein | - |
| PO876_RS17445 (PO876_17445) | 3580631..3580957 | + | 327 | WP_013846825.1 | hypothetical protein | - |
| PO876_RS17450 (PO876_17450) | 3580954..3581367 | + | 414 | WP_021246300.1 | hypothetical protein | - |
| PO876_RS17455 (PO876_17455) | 3581364..3581873 | + | 510 | WP_037484338.1 | hypothetical protein | - |
| PO876_RS17460 (PO876_17460) | 3581870..3582106 | + | 237 | WP_021246298.1 | hypothetical protein | - |
| PO876_RS17465 (PO876_17465) | 3582096..3582761 | + | 666 | WP_274049516.1 | conjugal transfer protein TraW | - |
| PO876_RS17470 (PO876_17470) | 3582758..3583774 | + | 1017 | WP_021246296.1 | TraU family protein | - |
| PO876_RS17475 (PO876_17475) | 3584094..3586037 | + | 1944 | WP_013846831.1 | hypothetical protein | - |
| PO876_RS17480 (PO876_17480) | 3586034..3587152 | + | 1119 | WP_021246295.1 | conjugal transfer protein TraN | - |
| PO876_RS17485 (PO876_17485) | 3587124..3588005 | + | 882 | WP_021246294.1 | TrbC family F-type conjugative pilus assembly protein | - |
| PO876_RS17490 (PO876_17490) | 3587977..3588588 | + | 612 | WP_021246293.1 | S26 family signal peptidase | - |
| PO876_RS17495 (PO876_17495) | 3588606..3589457 | + | 852 | WP_223308116.1 | conjugal transfer protein TraF | - |
| PO876_RS17500 (PO876_17500) | 3589493..3590038 | + | 546 | WP_246343924.1 | hypothetical protein | - |
| PO876_RS17505 (PO876_17505) | 3590084..3591508 | + | 1425 | WP_021246290.1 | conjugal transfer protein TraH | - |
| PO876_RS17510 (PO876_17510) | 3591523..3595293 | + | 3771 | WP_021690792.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PO876_RS17515 (PO876_17515) | 3595290..3595748 | - | 459 | WP_021246288.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|