MGE detailed information
MGE type: Prophage MGE length: 38798 bp
Accession: NZ_CP117402 Location: 1955367..1994164 Organism: Salmonella enterica subsp. enterica serovar Give strain RM007 Replicon: chromosome
Accession: NZ_CP117402 Location: 1955367..1994164 Organism: Salmonella enterica subsp. enterica serovar Give strain RM007 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ13_RS09395 () | 1951640..1952281 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ13_RS09400 () | 1952381..1953559 | - | 1179 | WP_000173436.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ13_RS09405 () | 1953690..1953980 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ13_RS09410 () | 1954048..1954401 | + | 354 | WP_001042123.1 | protein YebF | - |
| PQQ13_RS09415 () | 1954495..1955154 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQQ13_RS09420 () | 1955367..1957418 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| PQQ13_RS09425 () | 1957455..1958153 | - | 699 | WP_000944280.1 | exodeoxyribonuclease X | - |
| PQQ13_RS09430 () | 1958177..1958833 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ13_RS09435 () | 1958941..1959171 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ13_RS09440 () | 1959309..1959683 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQQ13_RS09445 () | 1959684..1960559 | + | 876 | WP_000979695.1 | copper homeostasis membrane protein CopD | - |
| PQQ13_RS09450 () | 1960576..1960929 | + | 354 | WP_017441954.1 | YebY family protein | - |
| - | 1961032..1961175 | - | 144 | - | - | Antitoxin Detail |
| - | 1961070..1961173 | + | 104 | - | - | Toxin Detail |
| PQQ13_RS09455 () | 1961304..1962383 | - | 1080 | WP_000087641.1 | hypothetical protein ; Integrase | Integrase |
| PQQ13_RS09460 () | 1962416..1963564 | - | 1149 | Protein_1847 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQQ13_RS09465 () | 1963556..1963804 | + | 249 | Protein_1848 | glycoside hydrolase family 19 protein | - |
| PQQ13_RS09470 () | 1963801..1964333 | + | 533 | Protein_1849 | DUF2514 domain-containing protein | - |
| PQQ13_RS09475 () | 1964590..1964757 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ13_RS09480 () | 1965060..1965551 | + | 492 | WP_000348547.1 | DUF1441 family protein | - |
| PQQ13_RS09485 () | 1965538..1966105 | + | 568 | Protein_1852 | phage terminase large subunit family protein | - |
| PQQ13_RS09490 () | 1966146..1967084 | + | 939 | Protein_1853 | tail fiber protein | - |
| PQQ13_RS09495 () | 1967085..1967432 | + | 348 | Protein_1854 | tail assembly chaperone | - |
| PQQ13_RS09500 () | 1967529..1967729 | - | 201 | WP_031615635.1 | PagK family vesicle-borne virulence factor | - |
| PQQ13_RS09505 () | 1968119..1968299 | - | 181 | Protein_1856 | IS3 family transposase | - |
| PQQ13_RS09510 () | 1968299..1968424 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQQ13_RS09515 () | 1969078..1969245 | + | 168 | WP_269467194.1 | helix-turn-helix domain-containing protein | - |
| PQQ13_RS09520 () | 1969572..1970186 | - | 615 | WP_000848064.1 | disulfide bond formation protein B | - |
| PQQ13_RS09525 () | 1970196..1970354 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ13_RS09530 () | 1970487..1971401 | - | 915 | WP_001233453.1 | DMT family transporter | - |
| PQQ13_RS09535 () | 1972193..1972756 | - | 564 | Protein_1862 | fimbrial protein | - |
| PQQ13_RS09540 () | 1972746..1972911 | + | 166 | Protein_1863 | DUF4113 domain-containing protein | - |
| PQQ13_RS09545 () | 1972924..1973456 | + | 533 | Protein_1864 | IS256 family transposase ISEc39 | Transposase |
| PQQ13_RS09550 () | 1973602..1973742 | - | 141 | WP_001604859.1 | hypothetical protein | - |
| PQQ13_RS09555 () | 1973908..1974177 | - | 270 | WP_001611547.1 | hypothetical protein | - |
| PQQ13_RS09560 () | 1974217..1974417 | + | 201 | WP_000007801.1 | hypothetical protein | - |
| PQQ13_RS09565 () | 1974546..1974965 | + | 420 | WP_000354410.1 | GNAT family N-acetyltransferase | - |
| PQQ13_RS09570 () | 1975094..1975570 | - | 477 | WP_023230990.1 | hypothetical protein | - |
| PQQ13_RS09575 () | 1975899..1976294 | - | 396 | WP_000422887.1 | DUF1398 domain-containing protein | - |
| PQQ13_RS09580 () | 1976978..1977700 | + | 723 | WP_000182069.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQQ13_RS09585 () | 1977985..1978149 | + | 165 | WP_001134850.1 | hypothetical protein | - |
| PQQ13_RS09590 () | 1978374..1979024 | + | 651 | WP_000986166.1 | protein-serine/threonine phosphatase | - |
| PQQ13_RS09595 () | 1979043..1979234 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQQ13_RS09600 () | 1979345..1979581 | - | 237 | WP_024131167.1 | YebV family protein | - |
| PQQ13_RS09605 () | 1979698..1981137 | - | 1440 | WP_001530936.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ13_RS09610 () | 1981215..1983848 | - | 2634 | WP_001530909.1 | Intermembrane transport protein YebT | VF |
| PQQ13_RS09615 () | 1983817..1985100 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ13_RS09620 () | 1985229..1985726 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ13_RS09625 () | 1985824..1986510 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQQ13_RS09630 () | 1986530..1988578 | + | 2049 | WP_001091241.1 | carboxy terminal-processing peptidase | - |
| PQQ13_RS09635 () | 1988771..1989652 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQQ13_RS09640 () | 1989700..1991073 | - | 1374 | WP_000416144.1 | MFS transporter | - |
| PQQ13_RS09645 () | 1991249..1992040 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQQ13_RS09650 () | 1992252..1992491 | - | 240 | WP_001236778.1 | invasion protein YobH | - |
| PQQ13_RS09655 () | 1992649..1992792 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQQ13_RS09660 () | 1992863..1993150 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQQ13_RS09665 () | 1993799..1993942 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQQ13_RS09670 () | 1993955..1994164 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQQ13_RS09675 () | 1994384..1996129 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQQ13_RS09680 () | 1996195..1997004 | + | 810 | WP_000010916.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQQ13_RS09685 () | 1997001..1997567 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQQ13_RS09690 () | 1997977..1998435 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|