MGE detailed information
MGE type: Prophage MGE length: 29205 bp
Accession: NZ_CP117390 Location: 1882218..1911422 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM008 Replicon: chromosome
Accession: NZ_CP117390 Location: 1882218..1911422 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM008 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP88_RS09010 (1878534) | 1878534..1880228 | - | 1695 | WP_010989035.1 | SEL1-like repeat protein | - |
| PQP88_RS09015 (1880912) | 1880912..1881190 | - | 279 | Protein_1762 | transposase | - |
| PQP88_RS09020 (1881276) | 1881276..1881743 | - | 468 | Protein_1763 | phage integrase N-terminal domain-containing protein | - |
| PQP88_RS09025 (1882218) | 1882218..1882691 | - | 474 | WP_001219015.1 | peptidase | - |
| PQP88_RS09035 (1883352) | 1883352..1883657 | - | 306 | Protein_1765 | Arm DNA-binding domain-containing protein | - |
| PQP88_RS09040 (1884073) | 1884073..1884603 | + | 531 | WP_162920401.1 | hypothetical protein | - |
| PQP88_RS09045 (1884743) | 1884743..1886143 | + | 1401 | WP_076741639.1 | hypothetical protein | - |
| PQP88_RS09050 (1886136) | 1886136..1886909 | + | 774 | WP_000137444.1 | chromosome partition protein MukE | - |
| PQP88_RS09055 (1886906) | 1886906..1891489 | + | 4584 | WP_001017147.1 | chromosome partition protein MukB | - |
| PQP88_RS09060 (1891489) | 1891489..1892463 | + | 975 | WP_000548606.1 | DUF2220 family protein | - |
| PQP88_RS09065 (1892576) | 1892576..1893352 | + | 777 | WP_000113631.1 | sigma-70 family RNA polymerase sigma factor | - |
| PQP88_RS09070 (1893349) | 1893349..1893918 | + | 570 | WP_199275335.1 | hypothetical protein | - |
| PQP88_RS09075 (1893911) | 1893911..1897303 | + | 3393 | WP_001000564.1 | UvrD-helicase domain-containing protein | - |
| PQP88_RS09080 (1897391) | 1897391..1898146 | + | 756 | WP_001089670.1 | multiubiquitin domain-containing protein | - |
| PQP88_RS09085 (1898121) | 1898121..1899305 | + | 1185 | WP_076741638.1 | ThiF family adenylyltransferase | - |
| PQP88_RS09090 (1899299) | 1899299..1899763 | + | 465 | WP_001660343.1 | DUF6527 family protein | - |
| PQP88_RS09095 (1900144) | 1900144..1900611 | + | 468 | WP_000201266.1 | hypothetical protein | - |
| PQP88_RS09100 (1900608) | 1900608..1900829 | + | 222 | WP_000813787.1 | helix-turn-helix transcriptional regulator | - |
| PQP88_RS09105 (1901326) | 1901326..1901679 | + | 354 | WP_000269842.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQP88_RS09110 (1901684) | 1901684..1901986 | + | 303 | WP_000533827.1 | XRE family transcriptional regulator | Antitoxin Detail |
| PQP88_RS09115 (1902492) | 1902492..1903376 | + | 885 | WP_000511750.1 | hypothetical protein ; Integrase | Integrase |
| PQP88_RS09120 (1904245) | 1904245..1905507 | - | 1263 | WP_076741637.1 | hypothetical protein ; Integrase | Integrase |
| PQP88_RS09130 (1905845) | 1905845..1906642 | - | 798 | WP_000598920.1 | DgsA anti-repressor MtfA | - |
| PQP88_RS09140 (1907123) | 1907123..1907284 | + | 162 | WP_001529333.1 | hypothetical protein | - |
| PQP88_RS09145 (1907411) | 1907411..1907830 | + | 420 | WP_000394197.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PQP88_RS09150 (1907833) | 1907833..1909101 | + | 1269 | WP_000457662.1 | Y-family DNA polymerase | - |
| PQP88_RS09155 (1909556) | 1909556..1909768 | + | 213 | WP_000208509.1 | cold-shock protein | - |
| PQP88_RS09160 (1909779) | 1909779..1909967 | + | 189 | WP_024131109.1 | hypothetical protein | - |
| PQP88_RS09165 (1910211) | 1910211..1911422 | - | 1212 | WP_001080675.1 | porin OmpC | - |
| PQP88_RS09170 (1912072) | 1912072..1912371 | + | 300 | WP_000107430.1 | cell division protein DrpB | - |
| PQP88_RS09175 (1912463) | 1912463..1913158 | + | 696 | WP_000377042.1 | phosphohydrolase | - |
| PQP88_RS09180 (1913232) | 1913232..1914662 | + | 1431 | WP_001157294.1 | DNA cytosine methyltransferase | - |
| PQP88_RS09185 (1914643) | 1914643..1915113 | + | 471 | WP_000785978.1 | very short patch repair endonuclease | - |
| PQP88_RS09190 (1915102) | 1915102..1916022 | - | 921 | WP_274890575.1 | drug/metabolite exporter YedA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|