MGE detailed information
MGE type: Prophage MGE length: 29205 bp
Accession: NZ_CP117388 Location: 1882176..1911380 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM010 Replicon: chromosome
Accession: NZ_CP117388 Location: 1882176..1911380 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM010 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ04_RS09010 (1878492) | 1878492..1880186 | - | 1695 | WP_010989035.1 | SEL1-like repeat protein | - |
| PQQ04_RS09015 (1880870) | 1880870..1881148 | - | 279 | Protein_1762 | transposase | - |
| PQQ04_RS09020 (1881234) | 1881234..1881701 | - | 468 | Protein_1763 | phage integrase N-terminal domain-containing protein | - |
| PQQ04_RS09025 (1882176) | 1882176..1882649 | - | 474 | WP_001219015.1 | peptidase | - |
| PQQ04_RS09035 (1883310) | 1883310..1883615 | - | 306 | Protein_1765 | Arm DNA-binding domain-containing protein | - |
| PQQ04_RS09040 (1884031) | 1884031..1884561 | + | 531 | WP_162920401.1 | hypothetical protein | - |
| PQQ04_RS09045 (1884701) | 1884701..1886101 | + | 1401 | WP_076741639.1 | hypothetical protein | - |
| PQQ04_RS09050 (1886094) | 1886094..1886867 | + | 774 | WP_000137444.1 | chromosome partition protein MukE | - |
| PQQ04_RS09055 (1886864) | 1886864..1891447 | + | 4584 | WP_001017147.1 | chromosome partition protein MukB | - |
| PQQ04_RS09060 (1891447) | 1891447..1892421 | + | 975 | WP_000548606.1 | DUF2220 family protein | - |
| PQQ04_RS09065 (1892534) | 1892534..1893310 | + | 777 | WP_000113631.1 | sigma-70 family RNA polymerase sigma factor | - |
| PQQ04_RS09070 (1893307) | 1893307..1893876 | + | 570 | WP_199275335.1 | hypothetical protein | - |
| PQQ04_RS09075 (1893869) | 1893869..1897261 | + | 3393 | WP_274895114.1 | ATP-dependent helicase | - |
| PQQ04_RS09080 (1897349) | 1897349..1898104 | + | 756 | WP_001089670.1 | multiubiquitin domain-containing protein | - |
| PQQ04_RS09085 (1898079) | 1898079..1899263 | + | 1185 | WP_076741638.1 | ThiF family adenylyltransferase | - |
| PQQ04_RS09090 (1899257) | 1899257..1899721 | + | 465 | WP_001660343.1 | DUF6527 family protein | - |
| PQQ04_RS09095 (1900102) | 1900102..1900569 | + | 468 | WP_000201266.1 | hypothetical protein | - |
| PQQ04_RS09100 (1900566) | 1900566..1900787 | + | 222 | WP_000813787.1 | helix-turn-helix transcriptional regulator | - |
| PQQ04_RS09105 (1901284) | 1901284..1901637 | + | 354 | WP_000269842.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ04_RS09110 (1901642) | 1901642..1901944 | + | 303 | WP_000533827.1 | XRE family transcriptional regulator | Antitoxin Detail |
| PQQ04_RS09115 (1902450) | 1902450..1903334 | + | 885 | WP_000511750.1 | hypothetical protein ; Integrase | Integrase |
| PQQ04_RS09120 (1904203) | 1904203..1905465 | - | 1263 | WP_076741637.1 | Prophage integrase IntA ; Integrase | Integrase |
| PQQ04_RS09130 (1905803) | 1905803..1906600 | - | 798 | WP_000598920.1 | DgsA anti-repressor MtfA | - |
| PQQ04_RS09140 (1907081) | 1907081..1907242 | + | 162 | WP_001529333.1 | hypothetical protein | - |
| PQQ04_RS09145 (1907369) | 1907369..1907788 | + | 420 | WP_000394197.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PQQ04_RS09150 (1907791) | 1907791..1909059 | + | 1269 | WP_000457662.1 | Y-family DNA polymerase | - |
| PQQ04_RS09155 (1909514) | 1909514..1909726 | + | 213 | WP_000208509.1 | cold-shock protein | - |
| PQQ04_RS09160 (1909737) | 1909737..1909925 | + | 189 | WP_024131109.1 | hypothetical protein | - |
| PQQ04_RS09165 (1910169) | 1910169..1911380 | - | 1212 | WP_001080675.1 | porin OmpC | - |
| PQQ04_RS09170 (1912030) | 1912030..1912329 | + | 300 | WP_000107430.1 | cell division protein DrpB | - |
| PQQ04_RS09175 (1912421) | 1912421..1913116 | + | 696 | WP_000377042.1 | phosphohydrolase | - |
| PQQ04_RS09180 (1913190) | 1913190..1914620 | + | 1431 | WP_001157294.1 | DNA cytosine methyltransferase | - |
| PQQ04_RS09185 (1914601) | 1914601..1915071 | + | 471 | WP_000785978.1 | very short patch repair endonuclease | - |
| PQQ04_RS09190 (1915060) | 1915060..1915980 | - | 921 | WP_001212265.1 | drug/metabolite exporter YedA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|