MGE detailed information
MGE type: Prophage MGE length: 61771 bp
Accession: NZ_CP117378 Location: 2023584..2085354 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM038 Replicon: chromosome
Accession: NZ_CP117378 Location: 2023584..2085354 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM038 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP81_RS09780 () | 2019322..2019774 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| PQP81_RS09785 () | 2019804..2020544 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PQP81_RS09790 () | 2020581..2021102 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PQP81_RS09795 () | 2021104..2021703 | - | 600 | WP_000716750.1 | YebB family permuted papain-like enzyme | - |
| PQP81_RS09800 () | 2021912..2022604 | + | 693 | WP_000227324.1 | hypothetical protein | - |
| PQP81_RS09805 () | 2022964..2023575 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQP81_RS09810 () | 2023584..2024594 | + | 1011 | WP_000568504.1 | Holliday junction branch migration DNA helicase RuvB | - |
| PQP81_RS09815 () | 2024673..2025458 | - | 786 | WP_000571510.1 | hypothetical protein | VF |
| PQP81_RS09820 () | 2025455..2026210 | - | 756 | WP_000203023.1 | hypothetical protein | VF |
| PQP81_RS09825 () | 2026289..2027233 | + | 945 | WP_000939594.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQP81_RS09830 () | 2027249..2028568 | + | 1320 | WP_001184031.1 | murein DD-endopeptidase MepM | - |
| PQP81_RS09835 () | 2028685..2029656 | + | 972 | WP_000448401.1 | hypothetical protein | VF |
| PQP81_RS09840 () | 2029729..2031171 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQP81_RS09845 () | 2031295..2032164 | - | 870 | WP_001056719.1 | MurR/RpiR family transcriptional regulator | - |
| PQP81_RS09850 () | 2032506..2033981 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| PQP81_RS09855 () | 2034216..2036027 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| PQP81_RS09860 () | 2036065..2036706 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQP81_RS09865 () | 2036806..2037984 | - | 1179 | WP_000173429.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQP81_RS09870 () | 2038115..2038405 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQP81_RS09875 () | 2038473..2038826 | + | 354 | WP_001042123.1 | protein YebF | - |
| PQP81_RS09880 () | 2038920..2039579 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQP81_RS09885 () | 2039793..2041844 | + | 2052 | WP_000936997.1 | oligopeptidase B | - |
| PQP81_RS09890 () | 2041881..2042579 | - | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
| PQP81_RS09895 () | 2042603..2043259 | - | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| PQP81_RS09900 () | 2043367..2043597 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQP81_RS09905 () | 2043735..2044109 | + | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| PQP81_RS09910 () | 2044110..2044985 | + | 876 | WP_000979684.1 | copper homeostasis membrane protein CopD | - |
| PQP81_RS09915 () | 2045002..2045355 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2045455..2045600 | - | 146 | - | - | Antitoxin Detail |
| - | 2045495..2045598 | + | 104 | - | - | Toxin Detail |
| PQP81_RS09920 () | 2045728..2046807 | - | 1080 | WP_000087646.1 | hypothetical protein ; Integrase | Integrase |
| PQP81_RS09925 () | 2046837..2047832 | - | 996 | Protein_1938 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQP81_RS09930 () | 2047980..2048228 | + | 249 | Protein_1939 | glycoside hydrolase family 19 protein | - |
| PQP81_RS09935 () | 2048225..2048759 | + | 535 | Protein_1940 | DUF2514 domain-containing protein | - |
| PQP81_RS09940 () | 2049016..2049183 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQP81_RS09945 () | 2049248..2049436 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQP81_RS09950 () | 2049490..2049750 | + | 261 | Protein_1943 | DUF1441 family protein | - |
| PQP81_RS09955 () | 2049965..2050309 | + | 345 | Protein_1944 | macro domain-containing protein | - |
| PQP81_RS09960 () | 2050319..2050789 | + | 471 | Protein_1945 | tail fiber assembly protein | - |
| PQP81_RS09965 () | 2050886..2051086 | - | 201 | WP_031604217.1 | PagK family vesicle-borne virulence factor | - |
| PQP81_RS09970 () | 2051475..2051655 | - | 181 | Protein_1947 | IS3 family transposase | - |
| PQP81_RS09975 () | 2051655..2051780 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQP81_RS09980 () | 2052294..2052440 | - | 147 | WP_000951652.1 | hypothetical protein | - |
| PQP81_RS09985 () | 2052434..2052601 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQP81_RS09990 () | 2052928..2053542 | - | 615 | WP_000848072.1 | disulfide bond formation protein B | - |
| PQP81_RS09995 () | 2053552..2053710 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQP81_RS10000 () | 2053843..2054757 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| PQP81_RS10005 () | 2056051..2056473 | - | 423 | Protein_1954 | hypothetical protein ; Integrase | Integrase |
| PQP81_RS10010 () | 2056543..2057737 | + | 1195 | Protein_1955 | IS256 family transposase IS285 | Transposase |
| PQP81_RS10015 () | 2057883..2058023 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQP81_RS10020 () | 2058188..2058457 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQP81_RS10025 () | 2058827..2059246 | + | 420 | WP_000354410.1 | GNAT family N-acetyltransferase | - |
| PQP81_RS10030 () | 2059481..2060572 | - | 1092 | Protein_1959 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| PQP81_RS10035 () | 2061462..2062200 | - | 739 | Protein_1960 | hypothetical protein ; Integrase | Integrase |
| PQP81_RS10040 () | 2062319..2063332 | - | 1014 | WP_023168584.1 | acyltransferase family protein | - |
| PQP81_RS10045 () | 2064029..2064232 | - | 204 | WP_000774038.1 | hypothetical protein | VF |
| PQP81_RS10050 () | 2064416..2064661 | - | 246 | WP_001051755.1 | hypothetical protein | - |
| PQP81_RS10055 () | 2065860..2066069 | + | 210 | WP_000974708.1 | CZB domain-containing protein | - |
| PQP81_RS10060 () | 2066297..2066773 | - | 477 | WP_000030945.1 | hypothetical protein | - |
| PQP81_RS10065 () | 2067089..2067484 | - | 396 | WP_000422887.1 | DUF1398 domain-containing protein | - |
| PQP81_RS10070 () | 2068168..2068890 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| PQP81_RS10075 () | 2069175..2069339 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQP81_RS10080 () | 2069563..2070213 | + | 651 | WP_000986175.1 | protein-serine/threonine phosphatase | - |
| PQP81_RS10085 () | 2070232..2070423 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQP81_RS10090 () | 2070534..2070770 | - | 237 | WP_024131167.1 | YebV family protein | - |
| PQP81_RS10095 () | 2070888..2072327 | - | 1440 | WP_001670762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQP81_RS10100 () | 2072405..2075038 | - | 2634 | WP_001521100.1 | hypothetical protein | VF |
| PQP81_RS10105 () | 2075007..2076290 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQP81_RS10110 () | 2076419..2076916 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQP81_RS10115 () | 2077014..2077700 | + | 687 | WP_000431405.1 | RNA chaperone ProQ | - |
| PQP81_RS10120 () | 2077720..2079768 | + | 2049 | WP_001091239.1 | carboxy terminal-processing peptidase | - |
| PQP81_RS10125 () | 2079961..2080842 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQP81_RS10130 () | 2080890..2082263 | - | 1374 | WP_000416146.1 | MFS transporter | - |
| PQP81_RS10135 () | 2082439..2083230 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQP81_RS10140 () | 2083442..2083681 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQP81_RS10145 () | 2083839..2083982 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQP81_RS10150 () | 2084053..2084340 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQP81_RS10155 () | 2084989..2085132 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQP81_RS10160 () | 2085145..2085354 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQP81_RS10165 () | 2085574..2087319 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQP81_RS10170 () | 2087385..2088194 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQP81_RS10175 () | 2088191..2088757 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQP81_RS10180 () | 2089167..2089625 | - | 459 | WP_000156279.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|