MGE detailed information
MGE type: Genomic_island MGE length: 11362 bp
Accession: NZ_CP117373 Location: 833391..844752 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM043 Replicon: chromosome
Accession: NZ_CP117373 Location: 833391..844752 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM043 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ08_RS04005 (828837) | 828837..829935 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQQ08_RS04010 (829945) | 829945..831462 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQQ08_RS04015 (831538) | 831538..832083 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQQ08_RS04020 (832348) | 832348..833106 | + | 759 | WP_000244328.1 | amidase activator ActS | - |
| PQQ08_RS04030 (833391) | 833391..834197 | - | 807 | WP_001574939.1 | DUF1460 domain-containing protein | - |
| PQQ08_RS04035 (834477) | 834477..834728 | - | 252 | WP_001576352.1 | hypothetical protein | - |
| PQQ08_RS04040 (834937) | 834937..835164 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQQ08_RS04045 (835164) | 835164..835562 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQQ08_RS04050 (836370) | 836370..836906 | + | 537 | WP_001038502.1 | Attachment invasion locus protein | VF |
| PQQ08_RS04055 (836953) | 836953..837585 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQQ08_RS04060 (838304) | 838304..838885 | + | 582 | WP_001244651.1 | putative fimbrial-like protein YbgD | VF |
| PQQ08_RS04065 (839005) | 839005..841494 | + | 2490 | WP_000705504.1 | Outer membrane usher protein PapC | VF |
| PQQ08_RS04070 (841535) | 841535..842278 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| PQQ08_RS04075 (842275) | 842275..843351 | + | 1077 | WP_000141331.1 | hypothetical protein | - |
| PQQ08_RS04080 (843495) | 843495..844007 | + | 513 | WP_000336258.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ08_RS04085 (843994) | 843994..844752 | + | 759 | WP_000134794.1 | transcriptional regulator | - |
| PQQ08_RS04090 (844962) | 844962..845858 | - | 897 | WP_000503673.1 | nickel/cobalt efflux protein RcnA | - |
| PQQ08_RS04095 (845979) | 845979..846251 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQQ08_RS04100 (846282) | 846282..847511 | - | 1230 | WP_000036836.1 | amino acid permease | - |
| PQQ08_RS04105 (847653) | 847653..848108 | - | 456 | WP_001574932.1 | multidrug/biocide efflux PACE transporter | - |
| PQQ08_RS04110 (848212) | 848212..849075 | + | 864 | WP_001270781.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.008 |