MGE detailed information
MGE type: Conjugative plasmid MGE length: 93864 bp
Accession: NZ_CP117358 Location: 1..93864 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 Replicon: plasmid pRM096_1
Accession: NZ_CP117358 Location: 1..93864 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 Replicon: plasmid pRM096_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ15_RS23665 (PQQ15_23665) | 1237..1681 | - | 445 | Protein_1 | tyrosine-type recombinase/integrase | - |
| PQQ15_RS23670 (PQQ15_23670) | 1850..2231 | - | 382 | Protein_2 | YgiW/YdeI family stress tolerance OB fold protein | - |
| PQQ15_RS23675 (PQQ15_23675) | 2949..3251 | + | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| PQQ15_RS23680 (PQQ15_23680) | 3526..4044 | + | 519 | WP_000748205.1 | hypothetical protein | VF |
| PQQ15_RS23685 (PQQ15_23685) | 4272..6680 | + | 2409 | WP_000007893.1 | Outer membrane usher protein FimD | VF |
| PQQ15_RS23690 (PQQ15_23690) | 6673..7365 | + | 693 | WP_001038510.1 | Chaperone protein FaeE | VF |
| PQQ15_RS23695 (PQQ15_23695) | 7380..7937 | + | 558 | WP_010999940.1 | membrane protein | - |
| PQQ15_RS23700 (PQQ15_23700) | 8190..9065 | + | 876 | WP_014343944.1 | hypothetical protein | - |
| PQQ15_RS23705 (PQQ15_23705) | 9497..9709 | + | 213 | WP_000004313.1 | hypothetical protein | VF |
| PQQ15_RS23710 (PQQ15_23710) | 9694..10044 | + | 351 | WP_001526811.1 | Transcriptional regulatory protein RcsB | VF |
| PQQ15_RS23715 (PQQ15_23715) | 10289..10942 | + | 654 | WP_000178592.1 | DsbA family protein | - |
| PQQ15_RS23720 (PQQ15_23720) | 10932..11078 | + | 147 | WP_001192557.1 | hypothetical protein | - |
| PQQ15_RS23725 (PQQ15_23725) | 11075..11974 | + | 900 | WP_274882985.1 | YjiK family protein | - |
| PQQ15_RS23730 (PQQ15_23730) | 12064..12621 | + | 558 | WP_000725062.1 | Attachment invasion locus protein | VF |
| PQQ15_RS23735 (PQQ15_23735) | 12888..13646 | + | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| PQQ15_RS23740 (PQQ15_23740) | 13743..13937 | - | 195 | Protein_16 | SdiA-regulated domain-containing protein | - |
| PQQ15_RS23745 (PQQ15_23745) | 14824..15705 | - | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| PQQ15_RS23750 (PQQ15_23750) | 15686..15763 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| PQQ15_RS23755 (PQQ15_23755) | 16013..16279 | - | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| PQQ15_RS23760 (PQQ15_23760) | 16390..16956 | - | 567 | Protein_20 | phospholipase D family protein | - |
| PQQ15_RS23765 (PQQ15_23765) | 17066..17182 | - | 117 | WP_001526822.1 | hypothetical protein | - |
| PQQ15_RS23770 (PQQ15_23770) | 17234..17518 | - | 285 | WP_000477658.1 | hypothetical protein | - |
| PQQ15_RS23775 (PQQ15_23775) | 17633..18196 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| PQQ15_RS23780 (PQQ15_23780) | 18251..18991 | - | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| PQQ15_RS23785 (PQQ15_23785) | 19011..24269 | - | 5259 | WP_000986921.1 | Multifunctional conjugation protein TraI | Relaxase |
| PQQ15_RS23790 (PQQ15_23790) | 24351..24578 | + | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQQ15_RS23795 (PQQ15_23795) | 24578..24976 | + | 399 | WP_000911322.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQQ15_RS23800 (PQQ15_23800) | 24985..27147 | - | 2163 | WP_084568444.1 | type IV conjugative transfer system coupling protein TraD | - |
| PQQ15_RS23805 (PQQ15_23805) | 27524..28255 | - | 732 | WP_000782438.1 | conjugal transfer complement resistance protein TraT | - |
| PQQ15_RS23810 (PQQ15_23810) | 28291..28785 | - | 495 | WP_010999946.1 | entry exclusion protein | - |
| PQQ15_RS23815 (PQQ15_23815) | 28801..31623 | - | 2823 | WP_001007086.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| PQQ15_RS23820 (PQQ15_23820) | 31620..33002 | - | 1383 | WP_001161719.1 | conjugal transfer pilus assembly protein TraH | - |
| PQQ15_RS23825 (PQQ15_23825) | 32992..33540 | - | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PQQ15_RS23830 (PQQ15_23830) | 33527..33820 | - | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| PQQ15_RS23835 (PQQ15_23835) | 34034..34783 | - | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PQQ15_RS23840 (PQQ15_23840) | 34795..35010 | - | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| PQQ15_RS23845 (PQQ15_23845) | 35021..36847 | - | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PQQ15_RS23850 (PQQ15_23850) | 36844..37263 | - | 420 | WP_001229397.1 | HNH endonuclease signature motif containing protein | - |
| PQQ15_RS23855 (PQQ15_23855) | 37300..37938 | - | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PQQ15_RS23860 (PQQ15_23860) | 37923..38230 | - | 308 | Protein_40 | hypothetical protein | - |
| PQQ15_RS23865 (PQQ15_23865) | 38249..39241 | - | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| PQQ15_RS23870 (PQQ15_23870) | 39238..39870 | - | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| PQQ15_RS23875 (PQQ15_23875) | 39867..40253 | - | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| PQQ15_RS23880 (PQQ15_23880) | 40228..42876 | - | 2649 | WP_274882989.1 | type IV secretion system protein TraC | - |
| PQQ15_RS23885 (PQQ15_23885) | 42892..43155 | - | 264 | WP_001239255.1 | hypothetical protein | - |
| PQQ15_RS23890 (PQQ15_23890) | 43272..43739 | - | 468 | WP_000549562.1 | hypothetical protein | - |
| PQQ15_RS23895 (PQQ15_23895) | 43732..43953 | - | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| PQQ15_RS23900 (PQQ15_23900) | 44088..44603 | - | 516 | WP_274882992.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PQQ15_RS23905 (PQQ15_23905) | 44600..44845 | - | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| PQQ15_RS23910 (PQQ15_23910) | 44823..45419 | - | 597 | WP_000527896.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PQQ15_RS23915 (PQQ15_23915) | 45409..46830 | - | 1422 | WP_000146700.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PQQ15_RS23920 (PQQ15_23920) | 46830..47570 | - | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| PQQ15_RS23925 (PQQ15_23925) | 47557..48123 | - | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| PQQ15_RS23930 (PQQ15_23930) | 48145..48456 | - | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| PQQ15_RS23935 (PQQ15_23935) | 48471..48833 | - | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| PQQ15_RS23940 (PQQ15_23940) | 48875..49102 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| PQQ15_RS23945 (PQQ15_23945) | 49196..49882 | - | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| PQQ15_RS23950 (PQQ15_23950) | 50075..50455 | - | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PQQ15_RS23955 (PQQ15_23955) | 50870..51340 | + | 471 | WP_001526856.1 | hypothetical protein | VF |
| PQQ15_RS23960 (PQQ15_23960) | 51651..52469 | - | 819 | Protein_60 | DUF932 domain-containing protein | - |
| PQQ15_RS23965 (PQQ15_23965) | 52572..52730 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| PQQ15_RS23970 (PQQ15_23970) | 52816..52944 | - | 129 | WP_000372429.1 | hypothetical protein | - |
| PQQ15_RS23975 (PQQ15_23975) | 52979..53716 | - | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| PQQ15_RS23980 (PQQ15_23980) | 53713..54147 | - | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| PQQ15_RS23985 (PQQ15_23985) | 54187..56184 | - | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| PQQ15_RS23990 (PQQ15_23990) | 56253..56495 | - | 243 | WP_023171229.1 | DUF905 domain-containing protein | - |
| PQQ15_RS23995 (PQQ15_23995) | 56550..57068 | - | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| PQQ15_RS24000 (PQQ15_24000) | 57662..57841 | - | 180 | WP_139816095.1 | hypothetical protein | - |
| PQQ15_RS24005 (PQQ15_24005) | 57805..58128 | - | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| PQQ15_RS24010 (PQQ15_24010) | 58364..58798 | - | 435 | WP_000274533.1 | DUF1380 family protein | - |
| PQQ15_RS24015 (PQQ15_24015) | 58865..59299 | - | 435 | WP_001200150.1 | antirestriction protein | - |
| PQQ15_RS24020 (PQQ15_24020) | 59795..60559 | - | 765 | WP_023171220.1 | hypothetical protein | - |
| PQQ15_RS24025 (PQQ15_24025) | 60631..61044 | - | 414 | WP_000990114.1 | DUF1380 family protein | - |
| PQQ15_RS24030 (PQQ15_24030) | 61100..61321 | - | 222 | WP_001109588.1 | hypothetical protein | - |
| PQQ15_RS24035 (PQQ15_24035) | 61321..62001 | - | 681 | WP_000088645.1 | DNA methylase | - |
| PQQ15_RS24040 (PQQ15_24040) | 62164..62445 | + | 282 | WP_146671468.1 | hypothetical protein | - |
| PQQ15_RS24045 (PQQ15_24045) | 62383..62739 | - | 357 | WP_000369839.1 | hypothetical protein | - |
| PQQ15_RS24050 (PQQ15_24050) | 62732..63202 | - | 471 | WP_000490265.1 | hypothetical protein | - |
| PQQ15_RS24055 (PQQ15_24055) | 63713..64135 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PQQ15_RS24060 (PQQ15_24060) | 64135..65409 | + | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| PQQ15_RS24065 (PQQ15_24065) | 65491..66465 | - | 975 | WP_000064274.1 | ParB family protein | - |
| PQQ15_RS24070 (PQQ15_24070) | 66465..67670 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| PQQ15_RS24075 (PQQ15_24075) | 68085..69026 | + | 942 | WP_000728917.1 | Recombination-promoting nuclease RpnA | VF |
| PQQ15_RS24080 (PQQ15_24080) | 69023..69624 | - | 602 | Protein_84 | DUF2913 family protein | - |
| PQQ15_RS24085 (PQQ15_24085) | 69681..70097 | - | 417 | WP_000988946.1 | hypothetical protein | - |
| PQQ15_RS24090 (PQQ15_24090) | 70200..70616 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| PQQ15_RS24095 (PQQ15_24095) | 70702..71817 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQQ15_RS24100 (PQQ15_24100) | 72076..72564 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| PQQ15_RS24105 (PQQ15_24105) | 73219..73959 | + | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQQ15_RS24110 (PQQ15_24110) | 74166..74726 | + | 561 | WP_001240331.1 | Tn3 family transposase ISPsy42 | Transposase |
| PQQ15_RS24115 (PQQ15_24115) | 74710..76374 | + | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| PQQ15_RS24120 (PQQ15_24120) | 76307..77332 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| PQQ15_RS24125 (PQQ15_24125) | 77521..78558 | - | 1038 | WP_023171215.1 | IS630 family transposase ISEc33 | Transposase |
| PQQ15_RS24130 (PQQ15_24130) | 79165..80058 | + | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| PQQ15_RS24135 (PQQ15_24135) | 80232..80396 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQQ15_RS24140 (PQQ15_24140) | 80570..81337 | + | 768 | WP_001526990.1 | virulence protein SpvA | - |
| PQQ15_RS24145 (PQQ15_24145) | 81300..81467 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| PQQ15_RS24150 (PQQ15_24150) | 81519..83294 | + | 1776 | WP_001676648.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQQ15_RS24155 (PQQ15_24155) | 83575..84300 | + | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQQ15_RS24160 (PQQ15_24160) | 84561..85211 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQQ15_RS24165 (PQQ15_24165) | 85338..85762 | - | 425 | Protein_101 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ15_RS24170 (PQQ15_24170) | 85819..86169 | + | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ15_RS24175 (PQQ15_24175) | 86236..86781 | - | 546 | WP_071591236.1 | Invasin | VF |
| PQQ15_RS24180 (PQQ15_24180) | 86676..86999 | - | 324 | WP_022659391.1 | hypothetical protein | - |
| PQQ15_RS24185 (PQQ15_24185) | 87516..88001 | - | 486 | WP_000905606.1 | membrane protein | - |
| PQQ15_RS24190 (PQQ15_24190) | 87995..88483 | - | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ15_RS24195 (PQQ15_24195) | 88508..89221 | - | 714 | Protein_107 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQQ15_RS24200 (PQQ15_24200) | 89230..90012 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| PQQ15_RS24205 (PQQ15_24205) | 90047..90568 | - | 522 | WP_023171969.1 | hypothetical protein | - |
| PQQ15_RS24210 (PQQ15_24210) | 90565..90855 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| PQQ15_RS24215 (PQQ15_24215) | 90857..91162 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | - |
| PQQ15_RS24220 (PQQ15_24220) | 91164..91382 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| PQQ15_RS24225 (PQQ15_24225) | 92058..92579 | + | 522 | WP_010999942.1 | hypothetical protein | - |
| PQQ15_RS24230 (PQQ15_24230) | 92623..93051 | - | 429 | Protein_114 | hypothetical protein | - |
| PQQ15_RS24235 (PQQ15_24235) | 93063..93359 | + | 297 | WP_001687482.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|