MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 75391 bp
Accession: NZ_CP117356 Location: 1..75391 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM099 Replicon: plasmid pRM099_2
Accession: NZ_CP117356 Location: 1..75391 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM099 Replicon: plasmid pRM099_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP84_RS24265 (PQP84_24265) | 1578..1972 | - | 395 | Protein_1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| PQP84_RS24270 (PQP84_24270) | 2041..2175 | - | 135 | Protein_2 | IS66 family transposase ISEc8 | Transposase |
| PQP84_RS24275 (PQP84_24275) | 2330..2527 | - | 198 | WP_001675602.1 | transposase | - |
| PQP84_RS24280 (PQP84_24280) | 2822..3424 | - | 603 | WP_223151229.1 | hypothetical protein | - |
| PQP84_RS24285 (PQP84_24285) | 3652..4311 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| PQP84_RS24290 (PQP84_24290) | 5769..6041 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| PQP84_RS24295 (PQP84_24295) | 6277..7074 | + | 798 | WP_000704721.1 | hypothetical protein | VF |
| PQP84_RS24300 (PQP84_24300) | 7102..7866 | + | 765 | WP_000827659.1 | hypothetical protein | VF |
| PQP84_RS24305 (PQP84_24305) | 7853..8128 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| PQP84_RS24310 (PQP84_24310) | 8128..8841 | + | 714 | WP_000801115.1 | hypothetical protein | VF |
| PQP84_RS24315 (PQP84_24315) | 8966..9550 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| PQP84_RS24320 (PQP84_24320) | 9623..9835 | + | 213 | WP_000063794.1 | P fimbrial regulatory protein KS71A | VF |
| PQP84_RS24325 (PQP84_24325) | 10096..10257 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| PQP84_RS24330 (PQP84_24330) | 10283..11131 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| PQP84_RS24335 (PQP84_24335) | 11701..12129 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQP84_RS24340 (PQP84_24340) | 12126..12356 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PQP84_RS24345 (PQP84_24345) | 13101..13319 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PQP84_RS24350 (PQP84_24350) | 13321..13626 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PQP84_RS24355 (PQP84_24355) | 13628..13918 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| PQP84_RS24360 (PQP84_24360) | 13915..14436 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| PQP84_RS24365 (PQP84_24365) | 14471..15253 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| PQP84_RS24370 (PQP84_24370) | 15262..15945 | + | 684 | WP_001751692.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQP84_RS24375 (PQP84_24375) | 15999..16487 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQP84_RS24380 (PQP84_24380) | 16481..16817 | + | 337 | Protein_24 | hypothetical protein | - |
| PQP84_RS24385 (PQP84_24385) | 16727..17149 | + | 423 | WP_274891770.1 | LysM peptidoglycan-binding domain-containing protein | - |
| PQP84_RS24390 (PQP84_24390) | 17044..17589 | + | 546 | WP_071591236.1 | inverse autotransporter beta domain-containing protein | - |
| PQP84_RS24395 (PQP84_24395) | 17656..18015 | - | 360 | WP_001675600.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQP84_RS24400 (PQP84_24400) | 18072..18497 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQP84_RS24405 (PQP84_24405) | 18624..19274 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQP84_RS24410 (PQP84_24410) | 19535..20260 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQP84_RS24415 (PQP84_24415) | 20543..22324 | - | 1782 | WP_001675599.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQP84_RS24420 (PQP84_24420) | 22376..22543 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| PQP84_RS24425 (PQP84_24425) | 22506..23273 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| PQP84_RS24430 (PQP84_24430) | 23447..23611 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQP84_RS24435 (PQP84_24435) | 23785..24678 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| PQP84_RS24440 (PQP84_24440) | 25285..26322 | + | 1038 | WP_001121398.1 | IS630 family transposase ISEc33 | Transposase |
| PQP84_RS24445 (PQP84_24445) | 26511..27536 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| PQP84_RS24450 (PQP84_24450) | 27469..29133 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| PQP84_RS24455 (PQP84_24455) | 29117..29386 | - | 270 | Protein_39 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| PQP84_RS24460 (PQP84_24460) | 29451..30155 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQP84_RS24465 (PQP84_24465) | 30209..30505 | - | 297 | Protein_41 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| PQP84_RS24470 (PQP84_24470) | 30712..31452 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQP84_RS24475 (PQP84_24475) | 32107..32595 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| PQP84_RS24480 (PQP84_24480) | 32854..33969 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQP84_RS24485 (PQP84_24485) | 34055..34471 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| PQP84_RS24490 (PQP84_24490) | 34574..34990 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| PQP84_RS24495 (PQP84_24495) | 35047..35648 | + | 602 | Protein_47 | DUF2913 family protein | - |
| PQP84_RS24500 (PQP84_24500) | 35645..36587 | - | 943 | Protein_48 | Recombination-promoting nuclease RpnA | VF |
| PQP84_RS24505 (PQP84_24505) | 36981..37600 | + | 620 | Protein_49 | ParA family protein | - |
| PQP84_RS24510 (PQP84_24510) | 37652..37882 | + | 231 | WP_000051066.1 | plasmid partition protein ParG | - |
| PQP84_RS24515 (PQP84_24515) | 38521..38874 | - | 354 | WP_001675596.1 | DNA distortion polypeptide 3 | - |
| PQP84_RS24520 (PQP84_24520) | 39011..39457 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| PQP84_RS24525 (PQP84_24525) | 39497..40333 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| PQP84_RS24530 (PQP84_24530) | 41569..41820 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| PQP84_RS24535 (PQP84_24535) | 41810..42091 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQP84_RS24540 (PQP84_24540) | 42237..42560 | + | 324 | WP_274891767.1 | hypothetical protein | - |
| PQP84_RS24545 (PQP84_24545) | 42605..42850 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| PQP84_RS24550 (PQP84_24550) | 42840..43055 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| PQP84_RS24555 (PQP84_24555) | 43148..43477 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| PQP84_RS24560 (PQP84_24560) | 43520..43699 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| PQP84_RS24565 (PQP84_24565) | 43721..43918 | + | 198 | WP_001675595.1 | hypothetical protein | - |
| PQP84_RS24570 (PQP84_24570) | 43931..44203 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| PQP84_RS24575 (PQP84_24575) | 44529..45074 | + | 546 | WP_000757691.1 | DNA distortion polypeptide 1 | - |
| PQP84_RS24580 (PQP84_24580) | 45077..46258 | + | 1182 | WP_000539536.1 | hypothetical protein | Relaxase |
| PQP84_RS24585 (PQP84_24585) | 46604..47122 | + | 519 | WP_001675951.1 | transcription termination/antitermination NusG family protein | - |
| PQP84_RS24590 (PQP84_24590) | 47052..47264 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| PQP84_RS24595 (PQP84_24595) | 47297..47944 | + | 648 | WP_000953526.1 | Type IV secretion system protein virB1 | VF |
| PQP84_RS24600 (PQP84_24600) | 47922..48218 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| PQP84_RS24605 (PQP84_24605) | 48237..50990 | + | 2754 | WP_001675613.1 | Type IV secretion system protein virB4 | VF |
| PQP84_RS24610 (PQP84_24610) | 51001..51759 | + | 759 | WP_000744198.1 | type IV secretion system protein | - |
| PQP84_RS24615 (PQP84_24615) | 51760..51987 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| PQP84_RS24620 (PQP84_24620) | 51997..53130 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| PQP84_RS24625 (PQP84_24625) | 53257..53385 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| PQP84_RS24630 (PQP84_24630) | 53375..54088 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| PQP84_RS24635 (PQP84_24635) | 54093..55022 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| PQP84_RS24640 (PQP84_24640) | 55019..56224 | + | 1206 | WP_000139139.1 | Type IV secretion system protein virB10 | VF |
| PQP84_RS24645 (PQP84_24645) | 56226..57256 | + | 1031 | Protein_77 | Type IV secretion system protein VirB11 | VF |
| PQP84_RS24650 (PQP84_24650) | 57259..59094 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PQP84_RS24655 (PQP84_24655) | 59091..59504 | + | 414 | WP_001575522.1 | cag pathogenicity island Cag12 family protein | - |
| PQP84_RS24660 (PQP84_24660) | 59501..59803 | + | 303 | WP_015059377.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PQP84_RS24665 (PQP84_24665) | 59916..60110 | + | 195 | Protein_81 | ATP-binding protein | - |
| PQP84_RS24670 (PQP84_24670) | 60114..60689 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| PQP84_RS24675 (PQP84_24675) | 60694..62847 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| PQP84_RS24680 (PQP84_24680) | 62844..63050 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| PQP84_RS24685 (PQP84_24685) | 63066..63500 | + | 435 | WP_274891768.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQP84_RS24690 (PQP84_24690) | 64163..64648 | + | 486 | WP_001281416.1 | Abi family protein | - |
| PQP84_RS24695 (PQP84_24695) | 64807..65934 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| PQP84_RS24700 (PQP84_24700) | 66760..66855 | + | 96 | WP_274891769.1 | DinQ-like type I toxin DqlB | - |
| PQP84_RS24705 (PQP84_24705) | 67012..67656 | - | 645 | WP_000203397.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQP84_RS24710 (PQP84_24710) | 67730..71986 | + | 4257 | Protein_90 | Multifunctional conjugation protein TraI | Relaxase |
| PQP84_RS24715 (PQP84_24715) | 72006..72746 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| PQP84_RS24720 (PQP84_24720) | 72801..73364 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| PQP84_RS24725 (PQP84_24725) | 73481..73762 | + | 282 | Protein_93 | disulfide bond formation protein DsbA | - |
| PQP84_RS24730 (PQP84_24730) | 74043..74610 | + | 568 | Protein_94 | phospholipase D family protein | - |
| PQP84_RS24735 (PQP84_24735) | 74721..74987 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| PQP84_RS24740 (PQP84_24740) | 75235..75312 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|