MGE detailed information
MGE type: Genomic_island MGE length: 11363 bp
Accession: NZ_CP117354 Location: 833478..844840 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM099 Replicon: chromosome
Accession: NZ_CP117354 Location: 833478..844840 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM099 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP84_RS04000 (828924) | 828924..830022 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQP84_RS04005 (830032) | 830032..831549 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQP84_RS04010 (831625) | 831625..832170 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQP84_RS04015 (832435) | 832435..833193 | + | 759 | WP_000244328.1 | amidase activator ActS | - |
| PQP84_RS04025 (833478) | 833478..834284 | - | 807 | WP_001574939.1 | DUF1460 domain-containing protein | - |
| PQP84_RS04030 (834564) | 834564..834815 | - | 252 | WP_001576352.1 | hypothetical protein | - |
| PQP84_RS04035 (835024) | 835024..835251 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQP84_RS04040 (835251) | 835251..835649 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQP84_RS04045 (836458) | 836458..836994 | + | 537 | WP_001038502.1 | Attachment invasion locus protein | VF |
| PQP84_RS04050 (837041) | 837041..837673 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQP84_RS04055 (838392) | 838392..838973 | + | 582 | WP_001244651.1 | putative fimbrial-like protein YbgD | VF |
| PQP84_RS04060 (839093) | 839093..841582 | + | 2490 | WP_000705504.1 | Outer membrane usher protein PapC | VF |
| PQP84_RS04065 (841623) | 841623..842366 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| PQP84_RS04070 (842363) | 842363..843439 | + | 1077 | WP_000141331.1 | hypothetical protein | - |
| PQP84_RS04075 (843583) | 843583..844095 | + | 513 | WP_000336258.1 | CaiF/GrlA family transcriptional regulator | - |
| PQP84_RS04080 (844082) | 844082..844840 | + | 759 | WP_000134794.1 | transcriptional regulator | - |
| PQP84_RS04085 (845046) | 845046..845912 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| PQP84_RS04090 (846033) | 846033..846305 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQP84_RS04095 (846336) | 846336..847565 | - | 1230 | WP_000036836.1 | amino acid permease | - |
| PQP84_RS04100 (847707) | 847707..848162 | - | 456 | WP_001574932.1 | multidrug/biocide efflux PACE transporter | - |
| PQP84_RS04105 (848266) | 848266..849129 | + | 864 | WP_001270781.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.008 |