MGE detailed information
MGE type: Prophage MGE length: 102899 bp
Accession: NZ_CP117351 Location: 2644969..2747867 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM100 Replicon: chromosome
Accession: NZ_CP117351 Location: 2644969..2747867 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM100 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ10_RS13010 () | 2640698..2641156 | + | 459 | WP_000156283.1 | DUF986 family protein | - |
| PQQ10_RS13015 () | 2641566..2642132 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQQ10_RS13020 () | 2642129..2642938 | - | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQQ10_RS13025 () | 2643004..2644749 | - | 1746 | WP_000730323.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQQ10_RS13030 () | 2644969..2645178 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQQ10_RS13035 () | 2645191..2645334 | - | 144 | WP_001675517.1 | DUF2627 domain-containing protein | - |
| PQQ10_RS13040 () | 2645983..2646270 | - | 288 | WP_001000659.1 | YebO family protein | - |
| PQQ10_RS13045 () | 2646341..2646484 | - | 144 | WP_000847421.1 | PhoP/PhoQ regulator MgrB | - |
| PQQ10_RS13050 () | 2646642..2646881 | + | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQQ10_RS13055 () | 2647093..2647884 | - | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQQ10_RS13060 () | 2648060..2649433 | + | 1374 | WP_000416139.1 | MFS transporter | - |
| PQQ10_RS13065 () | 2649481..2650362 | - | 882 | WP_000984498.1 | protease HtpX | - |
| PQQ10_RS13070 () | 2650555..2652603 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| PQQ10_RS13075 () | 2652623..2653309 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQQ10_RS13080 () | 2653407..2653904 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ10_RS13085 () | 2654033..2655316 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ10_RS13090 () | 2655285..2657918 | + | 2634 | WP_001752430.1 | Intermembrane transport protein YebT | VF |
| PQQ10_RS13095 () | 2657996..2659435 | + | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ10_RS13100 () | 2659553..2659789 | + | 237 | WP_024131108.1 | YebV family protein | - |
| PQQ10_RS13105 () | 2659900..2660091 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQQ10_RS13110 () | 2660110..2660760 | - | 651 | WP_000986173.1 | protein-serine/threonine phosphatase | - |
| PQQ10_RS13115 () | 2660984..2661148 | - | 165 | WP_001134856.1 | membrane protein | - |
| PQQ10_RS13120 () | 2661433..2662155 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQQ10_RS13125 () | 2662839..2663180 | + | 342 | WP_001752424.1 | DUF1398 family protein | - |
| PQQ10_RS13130 () | 2663562..2664038 | + | 477 | WP_000030946.1 | hypothetical protein | - |
| PQQ10_RS13135 () | 2664411..2664830 | - | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PQQ10_RS13140 () | 2665200..2665469 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ10_RS13145 () | 2665635..2665775 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ10_RS13150 () | 2665921..2667115 | - | 1195 | Protein_2573 | IS256 family transposase IS285 | Transposase |
| PQQ10_RS24860 () | 2667491..2667607 | + | 117 | WP_231919481.1 | integrase | - |
| PQQ10_RS13160 () | 2668903..2669818 | + | 916 | Protein_2575 | DMT family transporter | - |
| PQQ10_RS13165 () | 2669951..2670109 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ10_RS13170 () | 2670119..2670733 | + | 615 | WP_000848073.1 | disulfide bond formation protein B | - |
| PQQ10_RS13175 () | 2671060..2671227 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ10_RS13180 () | 2671881..2672006 | - | 126 | WP_001574229.1 | hypothetical protein | - |
| PQQ10_RS13185 () | 2672006..2672185 | + | 180 | Protein_2580 | IS3 family transposase | - |
| PQQ10_RS13190 () | 2672574..2672774 | + | 201 | WP_001751604.1 | PagK family vesicle-borne virulence factor | - |
| PQQ10_RS13195 () | 2672871..2673346 | - | 476 | Protein_2582 | tail fiber assembly protein | - |
| PQQ10_RS13200 () | 2673363..2673698 | - | 336 | Protein_2583 | macro domain-containing protein | - |
| PQQ10_RS13205 () | 2673913..2674178 | - | 266 | Protein_2584 | DUF1441 family protein | - |
| PQQ10_RS13210 () | 2674233..2674424 | + | 192 | WP_001034751.1 | hypothetical protein | - |
| PQQ10_RS13215 () | 2674489..2674656 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ10_RS13220 () | 2674913..2675446 | - | 534 | WP_000055326.1 | DUF2514 domain-containing protein | - |
| PQQ10_RS13225 () | 2675443..2675691 | - | 249 | Protein_2588 | glycoside hydrolase family 19 protein | - |
| PQQ10_RS13230 () | 2675839..2676834 | + | 996 | Protein_2589 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQQ10_RS13235 () | 2676864..2677941 | + | 1078 | Protein_2590 | hypothetical protein ; Integrase | Integrase |
| PQQ10_RS13240 () | 2678895..2679695 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| PQQ10_RS13245 () | 2679724..2679965 | - | 242 | Protein_2592 | recombinase family protein | - |
| PQQ10_RS13250 () | 2680175..2680897 | + | 723 | WP_000161701.1 | Guanine nucleotide exchange factor SopE | VF |
| PQQ10_RS13255 () | 2681099..2681668 | - | 570 | WP_000143180.1 | tail fiber assembly protein | - |
| PQQ10_RS13260 () | 2681668..2684085 | - | 2418 | WP_001574223.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PQQ10_RS13265 () | 2684139..2684375 | - | 237 | WP_223229643.1 | hypothetical protein | - |
| PQQ10_RS13270 () | 2684420..2685283 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| PQQ10_RS13275 () | 2685323..2687772 | - | 2450 | Protein_2598 | host specificity protein J | - |
| PQQ10_RS13280 () | 2687844..2688548 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| PQQ10_RS13285 () | 2688452..2689183 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| PQQ10_RS13290 () | 2689193..2689888 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| PQQ10_RS13295 () | 2689978..2690511 | + | 534 | WP_000877926.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| PQQ10_RS13300 () | 2690628..2691125 | - | 498 | WP_000725268.1 | Attachment invasion locus protein | VF |
| PQQ10_RS13305 () | 2691224..2691556 | - | 333 | WP_000978295.1 | phage tail protein | - |
| PQQ10_RS13310 () | 2691553..2694540 | - | 2988 | WP_077906652.1 | phage tail tape measure protein | - |
| PQQ10_RS13315 () | 2694620..2694949 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| PQQ10_RS13320 () | 2694946..2695344 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| PQQ10_RS13325 () | 2695390..2696139 | - | 750 | WP_000132757.1 | phage tail protein | - |
| PQQ10_RS13330 () | 2696151..2696552 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| PQQ10_RS13335 () | 2696549..2697115 | - | 567 | WP_000453192.1 | phage tail protein | - |
| PQQ10_RS13340 () | 2697096..2697395 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| PQQ10_RS13345 () | 2697388..2697711 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| PQQ10_RS13350 () | 2697802..2699883 | - | 2082 | WP_274896073.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| PQQ10_RS13355 () | 2699807..2701354 | - | 1548 | WP_001009211.1 | phage portal protein | - |
| PQQ10_RS13360 () | 2701351..2701557 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| PQQ10_RS13365 () | 2701554..2703692 | - | 2139 | WP_000989241.1 | phage terminase large subunit family protein | - |
| PQQ10_RS13370 () | 2703649..2704182 | - | 534 | WP_024139201.1 | DUF1441 family protein | - |
| PQQ10_RS13375 () | 2704390..2704869 | - | 480 | WP_001541990.1 | lysis protein | - |
| PQQ10_RS13380 () | 2704887..2705339 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| PQQ10_RS13385 () | 2705323..2705652 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| PQQ10_RS13390 () | 2705928..2706614 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| PQQ10_RS13395 () | 2706975..2707424 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| PQQ10_RS13400 () | 2707798..2708325 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| PQQ10_RS13405 () | 2708419..2709108 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| PQQ10_RS13410 () | 2709105..2709241 | - | 137 | Protein_2625 | YlcG family protein | - |
| PQQ10_RS13415 () | 2709238..2709378 | - | 141 | Protein_2626 | recombination protein NinG | - |
| PQQ10_RS13420 () | 2709462..2710061 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| PQQ10_RS13425 () | 2710125..2710343 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| PQQ10_RS13430 () | 2710645..2710743 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| PQQ10_RS13435 () | 2711062..2713041 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| PQQ10_RS13440 () | 2713438..2714568 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| PQQ10_RS13445 () | 2714855..2715250 | - | 396 | WP_000089417.1 | DUF977 family protein | - |
| PQQ10_RS13450 () | 2715263..2715805 | - | 543 | WP_158000546.1 | replication protein P | - |
| PQQ10_RS13455 () | 2715717..2716715 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| PQQ10_RS13460 () | 2716762..2717256 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| PQQ10_RS13465 () | 2717243..2717497 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| PQQ10_RS13470 () | 2717596..2717994 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| PQQ10_RS13475 () | 2718436..2718750 | - | 315 | WP_071591195.1 | hypothetical protein | - |
| PQQ10_RS13480 () | 2719012..2719287 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| PQQ10_RS13485 () | 2719291..2719497 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| PQQ10_RS13490 () | 2719573..2719908 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| PQQ10_RS13495 () | 2720049..2722739 | + | 2691 | WP_274883175.1 | exodeoxyribonuclease VIII | - |
| PQQ10_RS13500 () | 2722732..2723562 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQQ10_RS13505 () | 2723609..2723794 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQQ10_RS13510 () | 2723893..2724321 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQQ10_RS13515 () | 2724382..2724660 | + | 279 | WP_001675651.1 | excisionase | - |
| PQQ10_RS13520 () | 2724635..2725714 | + | 1080 | WP_076031669.1 | hypothetical protein ; Integrase | Integrase |
| - | 2725852..2725997 | + | 146 | - | - | Antitoxin Detail |
| - | 2725854..2725957 | - | 104 | - | - | Toxin Detail |
| PQQ10_RS13525 () | 2726097..2726450 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQQ10_RS13530 () | 2726467..2727342 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQQ10_RS13535 () | 2727343..2727717 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQQ10_RS13540 () | 2727855..2728085 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ10_RS13545 () | 2728193..2728849 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ10_RS13550 () | 2728873..2729571 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| PQQ10_RS13555 () | 2729608..2731659 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ10_RS13560 () | 2731872..2732531 | - | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| PQQ10_RS13565 () | 2732625..2732978 | - | 354 | WP_001042123.1 | protein YebF | - |
| PQQ10_RS13570 () | 2733046..2733336 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ10_RS13575 () | 2733467..2734645 | + | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ10_RS13580 () | 2734745..2735386 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ10_RS13585 () | 2735424..2737235 | - | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| PQQ10_RS13590 () | 2737470..2738945 | - | 1476 | WP_000301704.1 | glucose-6-phosphate dehydrogenase | - |
| PQQ10_RS13595 () | 2739287..2740156 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQQ10_RS13600 () | 2740280..2741722 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQQ10_RS13605 () | 2741795..2742766 | - | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PQQ10_RS13610 () | 2742883..2744202 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQQ10_RS13615 () | 2744218..2745162 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQQ10_RS13620 () | 2745241..2745996 | + | 756 | WP_000203013.1 | Zinc import ATP-binding protein ZnuC | VF |
| PQQ10_RS13625 () | 2745993..2746778 | + | 786 | WP_000571508.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| PQQ10_RS13630 () | 2746857..2747867 | - | 1011 | WP_274895986.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| PQQ10_RS13635 () | 2747876..2748487 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQQ10_RS13640 () | 2748847..2749539 | - | 693 | WP_001675835.1 | hypothetical protein | - |
| PQQ10_RS13645 () | 2749748..2750344 | + | 597 | WP_000716751.1 | YebB family permuted papain-like enzyme | - |
| PQQ10_RS13650 () | 2750444..2751940 | - | 1497 | WP_000974701.1 | substrate-binding domain-containing protein | - |
| PQQ10_RS13655 () | 2751971..2752492 | - | 522 | WP_000022510.1 | crossover junction endodeoxyribonuclease RuvC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|