MGE detailed information
MGE type: Prophage MGE length: 102899 bp
Accession: NZ_CP117346 Location: 2645148..2748046 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM104 Replicon: chromosome
Accession: NZ_CP117346 Location: 2645148..2748046 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM104 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP85_RS13000 () | 2640877..2641335 | + | 459 | WP_000156283.1 | DUF986 family protein | - |
| PQP85_RS13005 () | 2641745..2642311 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQP85_RS13010 () | 2642308..2643117 | - | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQP85_RS13015 () | 2643183..2644928 | - | 1746 | WP_000730323.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQP85_RS13020 () | 2645148..2645357 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQP85_RS13025 () | 2645370..2645513 | - | 144 | WP_001675517.1 | DUF2627 domain-containing protein | - |
| PQP85_RS13030 () | 2646162..2646449 | - | 288 | WP_001000659.1 | YebO family protein | - |
| PQP85_RS13035 () | 2646520..2646663 | - | 144 | WP_000847421.1 | PhoP/PhoQ regulator MgrB | - |
| PQP85_RS13040 () | 2646821..2647060 | + | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQP85_RS13045 () | 2647272..2648063 | - | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQP85_RS13050 () | 2648239..2649612 | + | 1374 | WP_000416139.1 | MFS transporter | - |
| PQP85_RS13055 () | 2649660..2650541 | - | 882 | WP_000984498.1 | protease HtpX | - |
| PQP85_RS13060 () | 2650734..2652782 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| PQP85_RS13065 () | 2652802..2653488 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQP85_RS13070 () | 2653586..2654083 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQP85_RS13075 () | 2654212..2655495 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQP85_RS13080 () | 2655464..2658097 | + | 2634 | WP_001752430.1 | Histidine--tRNA ligase | VF |
| PQP85_RS13085 () | 2658175..2659614 | + | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQP85_RS13090 () | 2659732..2659968 | + | 237 | WP_024131108.1 | YebV family protein | - |
| PQP85_RS13095 () | 2660079..2660270 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQP85_RS13100 () | 2660289..2660939 | - | 651 | WP_000986173.1 | protein-serine/threonine phosphatase | - |
| PQP85_RS13105 () | 2661163..2661327 | - | 165 | WP_001134856.1 | membrane protein | - |
| PQP85_RS13110 () | 2661612..2662334 | - | 723 | WP_000182072.1 | hypothetical protein | VF |
| PQP85_RS13115 () | 2663018..2663359 | + | 342 | WP_001752424.1 | DUF1398 family protein | - |
| PQP85_RS13120 () | 2663741..2664217 | + | 477 | WP_000030946.1 | hypothetical protein | - |
| PQP85_RS13125 () | 2664590..2665009 | - | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PQP85_RS13130 () | 2665379..2665648 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| PQP85_RS13135 () | 2665814..2665954 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| PQP85_RS13140 () | 2666100..2667294 | - | 1195 | Protein_2570 | IS256 family transposase IS285 | Transposase |
| PQP85_RS24885 () | 2667670..2667786 | + | 117 | WP_231919481.1 | integrase | - |
| PQP85_RS13150 () | 2669082..2669997 | + | 916 | Protein_2572 | DMT family transporter | - |
| PQP85_RS13155 () | 2670130..2670288 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQP85_RS13160 () | 2670298..2670912 | + | 615 | WP_000848073.1 | disulfide bond formation protein B | - |
| PQP85_RS13165 () | 2671239..2671406 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQP85_RS13170 () | 2672060..2672185 | - | 126 | WP_001574229.1 | hypothetical protein | - |
| PQP85_RS13175 () | 2672185..2672364 | + | 180 | Protein_2577 | IS3 family transposase | - |
| PQP85_RS13180 () | 2672753..2672953 | + | 201 | WP_001751604.1 | PagK family vesicle-borne virulence factor | - |
| PQP85_RS13185 () | 2673050..2673525 | - | 476 | Protein_2579 | tail fiber assembly protein | - |
| PQP85_RS13190 () | 2673542..2673877 | - | 336 | Protein_2580 | macro domain-containing protein | - |
| PQP85_RS13195 () | 2674092..2674357 | - | 266 | Protein_2581 | DUF1441 family protein | - |
| PQP85_RS13200 () | 2674412..2674603 | + | 192 | WP_001034751.1 | hypothetical protein | - |
| PQP85_RS13205 () | 2674668..2674835 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| PQP85_RS13210 () | 2675092..2675625 | - | 534 | WP_000055326.1 | DUF2514 domain-containing protein | - |
| PQP85_RS13215 () | 2675622..2675870 | - | 249 | Protein_2585 | glycoside hydrolase family 19 protein | - |
| PQP85_RS13220 () | 2676018..2677013 | + | 996 | Protein_2586 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQP85_RS13225 () | 2677043..2678122 | + | 1080 | WP_000087644.1 | Quinolinate synthase A ; Integrase | Integrase |
| PQP85_RS13230 () | 2679076..2679876 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| PQP85_RS13235 () | 2679905..2680146 | - | 242 | Protein_2589 | recombinase family protein | - |
| PQP85_RS13240 () | 2680356..2681078 | + | 723 | WP_000161701.1 | hypothetical protein | VF |
| PQP85_RS13245 () | 2681280..2681849 | - | 570 | WP_000143180.1 | tail fiber assembly protein | - |
| PQP85_RS13250 () | 2681849..2684266 | - | 2418 | WP_001574223.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PQP85_RS13255 () | 2684320..2684556 | - | 237 | WP_223229643.1 | hypothetical protein | - |
| PQP85_RS13260 () | 2684601..2685464 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| PQP85_RS13265 () | 2685504..2687953 | - | 2450 | Protein_2595 | host specificity protein J | - |
| PQP85_RS13270 () | 2688025..2688729 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| PQP85_RS13275 () | 2688633..2689364 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| PQP85_RS13280 () | 2689374..2690069 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| PQP85_RS13285 () | 2690159..2690692 | + | 534 | WP_000877926.1 | hypothetical protein | VF |
| PQP85_RS13290 () | 2690809..2691306 | - | 498 | WP_000725268.1 | hypothetical protein | VF |
| PQP85_RS13295 () | 2691405..2691737 | - | 333 | WP_000978295.1 | phage tail protein | - |
| PQP85_RS13300 () | 2691734..2694721 | - | 2988 | WP_077906652.1 | phage tail tape measure protein | - |
| PQP85_RS13305 () | 2694801..2695130 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| PQP85_RS13310 () | 2695127..2695525 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| PQP85_RS13315 () | 2695571..2696320 | - | 750 | WP_000132757.1 | phage tail protein | - |
| PQP85_RS13320 () | 2696332..2696733 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| PQP85_RS13325 () | 2696730..2697296 | - | 567 | WP_000453192.1 | phage tail protein | - |
| PQP85_RS13330 () | 2697277..2697576 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| PQP85_RS13335 () | 2697569..2697892 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| PQP85_RS13340 () | 2697983..2700063 | - | 2081 | Protein_2610 | Clp protease ClpP | - |
| PQP85_RS13345 () | 2699987..2701534 | - | 1548 | WP_001009211.1 | phage portal protein | - |
| PQP85_RS13350 () | 2701531..2701737 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| PQP85_RS13355 () | 2701734..2703872 | - | 2139 | WP_000989241.1 | phage terminase large subunit family protein | - |
| PQP85_RS13360 () | 2703829..2704362 | - | 534 | WP_024139201.1 | DUF1441 family protein | - |
| PQP85_RS13365 () | 2704570..2705049 | - | 480 | WP_001541990.1 | lysis protein | - |
| PQP85_RS13370 () | 2705067..2705519 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| PQP85_RS13375 () | 2705503..2705832 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| PQP85_RS13380 () | 2706108..2706794 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| PQP85_RS13385 () | 2707155..2707604 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| PQP85_RS13390 () | 2707978..2708505 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| PQP85_RS13395 () | 2708599..2709288 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| PQP85_RS13400 () | 2709285..2709421 | - | 137 | Protein_2622 | YlcG family protein | - |
| PQP85_RS13405 () | 2709418..2709558 | - | 141 | Protein_2623 | recombination protein NinG | - |
| PQP85_RS13410 () | 2709642..2710241 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| PQP85_RS13415 () | 2710305..2710523 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| PQP85_RS13420 () | 2710825..2710923 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| PQP85_RS13425 () | 2711242..2713221 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| PQP85_RS13430 () | 2713618..2714748 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| PQP85_RS13435 () | 2715035..2715430 | - | 396 | WP_000089417.1 | DUF977 family protein | - |
| PQP85_RS13440 () | 2715443..2715985 | - | 543 | WP_158000546.1 | replication protein P | - |
| PQP85_RS13445 () | 2715897..2716895 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| PQP85_RS13450 () | 2716942..2717436 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| PQP85_RS13455 () | 2717423..2717677 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| PQP85_RS13460 () | 2717776..2718174 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| PQP85_RS13465 () | 2718616..2718930 | - | 315 | WP_071591195.1 | hypothetical protein | - |
| PQP85_RS13470 () | 2719192..2719467 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| PQP85_RS13475 () | 2719471..2719677 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| PQP85_RS13480 () | 2719753..2720088 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| PQP85_RS13485 () | 2720229..2722919 | + | 2691 | WP_000023732.1 | exodeoxyribonuclease VIII | - |
| PQP85_RS13490 () | 2722912..2723741 | + | 830 | Protein_2640 | recombination protein RecT | - |
| PQP85_RS13495 () | 2723788..2723973 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQP85_RS13500 () | 2724072..2724500 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQP85_RS13505 () | 2724561..2724839 | + | 279 | WP_001675651.1 | excisionase | - |
| PQP85_RS13510 () | 2724814..2725893 | + | 1080 | WP_000087638.1 | hypothetical protein ; Integrase | Integrase |
| - | 2726031..2726176 | + | 146 | - | - | Antitoxin Detail |
| - | 2726033..2726136 | - | 104 | - | - | Toxin Detail |
| PQP85_RS13515 () | 2726276..2726629 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQP85_RS13520 () | 2726646..2727521 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQP85_RS13525 () | 2727522..2727896 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQP85_RS13530 () | 2728034..2728264 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQP85_RS13535 () | 2728372..2729028 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQP85_RS13540 () | 2729052..2729750 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| PQP85_RS13545 () | 2729787..2731838 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQP85_RS13550 () | 2732051..2732710 | - | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| PQP85_RS13555 () | 2732804..2733157 | - | 354 | WP_001042123.1 | protein YebF | - |
| PQP85_RS13560 () | 2733225..2733515 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQP85_RS13565 () | 2733646..2734824 | + | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQP85_RS13570 () | 2734924..2735565 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQP85_RS13575 () | 2735603..2737414 | - | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| PQP85_RS13580 () | 2737649..2739124 | - | 1476 | WP_000301704.1 | glucose-6-phosphate dehydrogenase | - |
| PQP85_RS13585 () | 2739466..2740335 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQP85_RS13590 () | 2740459..2741901 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQP85_RS13595 () | 2741974..2742945 | - | 972 | WP_000448401.1 | hypothetical protein | VF |
| PQP85_RS13600 () | 2743062..2744381 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQP85_RS13605 () | 2744397..2745341 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQP85_RS13610 () | 2745420..2746175 | + | 756 | WP_000203013.1 | Phenylalanine--tRNA ligase beta subunit | VF |
| PQP85_RS13615 () | 2746172..2746957 | + | 786 | WP_000571508.1 | Phenylalanine--tRNA ligase alpha subunit | VF |
| PQP85_RS13620 () | 2747036..2748046 | - | 1011 | WP_000568508.1 | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | VF |
| PQP85_RS13625 () | 2748055..2748666 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQP85_RS13630 () | 2749026..2749718 | - | 693 | WP_001675835.1 | hypothetical protein | - |
| PQP85_RS13635 () | 2749927..2750523 | + | 597 | WP_000716751.1 | YebB family permuted papain-like enzyme | - |
| PQP85_RS13640 () | 2750623..2752119 | - | 1497 | WP_000974701.1 | substrate-binding domain-containing protein | - |
| PQP85_RS13645 () | 2752150..2752671 | - | 522 | WP_000022510.1 | crossover junction endodeoxyribonuclease RuvC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|