Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2726031..2726176 | Replicon | chromosome |
| Accession | NZ_CP117346 | ||
| Organism | Salmonella enterica subsp. enterica serovar Dublin strain RM104 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2726033..2726136 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2726031..2726176 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP85_RS13490 | 2722912..2723741 | + | 830 | Protein_2640 | recombination protein RecT | - |
| PQP85_RS13495 | 2723788..2723973 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQP85_RS13500 | 2724072..2724500 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQP85_RS13505 | 2724561..2724839 | + | 279 | WP_001675651.1 | excisionase | - |
| PQP85_RS13510 | 2724814..2725893 | + | 1080 | WP_000087638.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2726031..2726176 | + | 146 | - | - | Antitoxin |
| - | 2726033..2726136 | - | 104 | - | - | Toxin |
| PQP85_RS13515 | 2726276..2726629 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQP85_RS13520 | 2726646..2727521 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQP85_RS13525 | 2727522..2727896 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQP85_RS13530 | 2728034..2728264 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQP85_RS13535 | 2728372..2729028 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQP85_RS13540 | 2729052..2729750 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2645148..2748046 | 102898 | |
| - | inside | Prophage | - | sopE2 / sodCI | 2673509..2748046 | 74537 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T270678 NZ_CP117346:c2726136-2726033 [Salmonella enterica subsp. enterica serovar Dublin]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT270678 NZ_CP117346:2726031-2726176 [Salmonella enterica subsp. enterica serovar Dublin]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
