MGE detailed information
MGE type: Genomic_island MGE length: 11363 bp
Accession: NZ_CP117343 Location: 833658..845020 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM105 Replicon: chromosome
Accession: NZ_CP117343 Location: 833658..845020 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM105 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP76_RS04000 (829104) | 829104..830202 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQP76_RS04005 (830212) | 830212..831729 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQP76_RS04010 (831805) | 831805..832350 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQP76_RS04015 (832615) | 832615..833373 | + | 759 | WP_000244328.1 | amidase activator ActS | - |
| PQP76_RS04025 (833658) | 833658..834464 | - | 807 | WP_001574939.1 | DUF1460 domain-containing protein | - |
| PQP76_RS04030 (834744) | 834744..834995 | - | 252 | WP_001576352.1 | hypothetical protein | - |
| PQP76_RS04035 (835204) | 835204..835431 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQP76_RS04040 (835431) | 835431..835829 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQP76_RS04045 (836638) | 836638..837174 | + | 537 | WP_001038502.1 | Attachment invasion locus protein | VF |
| PQP76_RS04050 (837221) | 837221..837853 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQP76_RS04055 (838572) | 838572..839153 | + | 582 | WP_001244651.1 | putative fimbrial-like protein YbgD | VF |
| PQP76_RS04060 (839273) | 839273..841762 | + | 2490 | WP_000705504.1 | Outer membrane usher protein PapC | VF |
| PQP76_RS04065 (841803) | 841803..842546 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| PQP76_RS04070 (842543) | 842543..843619 | + | 1077 | WP_000141331.1 | hypothetical protein | - |
| PQP76_RS04075 (843763) | 843763..844275 | + | 513 | WP_000336258.1 | CaiF/GrlA family transcriptional regulator | - |
| PQP76_RS04080 (844262) | 844262..845020 | + | 759 | WP_000134794.1 | transcriptional regulator | - |
| PQP76_RS04085 (845230) | 845230..846108 | - | 879 | WP_001675932.1 | nickel/cobalt efflux protein RcnA | - |
| PQP76_RS04090 (846229) | 846229..846501 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQP76_RS04095 (846532) | 846532..847761 | - | 1230 | WP_000036836.1 | amino acid permease | - |
| PQP76_RS04100 (847903) | 847903..848358 | - | 456 | WP_001574932.1 | multidrug/biocide efflux PACE transporter | - |
| PQP76_RS04105 (848462) | 848462..849325 | + | 864 | WP_001270781.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.008 |