MGE detailed information
MGE type: Prophage MGE length: 54325 bp
Accession: NZ_CP117326 Location: 4108143..4162467 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM108 Replicon: chromosome
Accession: NZ_CP117326 Location: 4108143..4162467 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM108 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ05_RS19910 (4103529) | 4103529..4104476 | + | 948 | WP_001181297.1 | trehalose operon repressor TreR | - |
| PQQ05_RS19915 (4104614) | 4104614..4106032 | + | 1419 | WP_000048839.1 | PTS trehalose transporter subunit IIBC | - |
| PQQ05_RS19920 (4106082) | 4106082..4107734 | + | 1653 | WP_000155055.1 | alpha,alpha-phosphotrehalase | - |
| PQQ05_RS19925 (4108143) | 4108143..4110281 | + | 2139 | WP_000187821.1 | anaerobic ribonucleoside-triphosphate reductase | - |
| PQQ05_RS19930 (4110498) | 4110498..4110962 | + | 465 | WP_001009175.1 | anaerobic ribonucleoside-triphosphate reductase-activating protein | - |
| PQQ05_RS19935 (4110966) | 4110966..4111250 | - | 285 | WP_000220579.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ05_RS19940 (4111240) | 4111240..4111482 | - | 243 | WP_000212724.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| PQQ05_RS19945 (4111560) | 4111560..4113473 | - | 1914 | WP_274895347.1 | BglG family transcription antiterminator | - |
| PQQ05_RS19950 (4113490) | 4113490..4114230 | - | 741 | WP_000779247.1 | KDGP aldolase family protein | - |
| PQQ05_RS19955 (4114227) | 4114227..4115345 | - | 1119 | WP_001139182.1 | DgaE family pyridoxal phosphate-dependent ammonia lyase | - |
| PQQ05_RS19960 (4115329) | 4115329..4116462 | - | 1134 | WP_000459949.1 | hypothetical protein | VF |
| PQQ05_RS19965 (4116521) | 4116521..4117165 | - | 645 | WP_000392127.1 | DUF4310 family protein | - |
| PQQ05_RS19970 (4117177) | 4117177..4117953 | - | 777 | WP_000478578.1 | DUF4311 domain-containing protein | - |
| PQQ05_RS19975 (4117976) | 4117976..4118278 | - | 303 | WP_000975187.1 | DUF4312 family protein | - |
| PQQ05_RS19980 (4118278) | 4118278..4118640 | - | 363 | WP_000435390.1 | SFCGS family glycine-rich protein | - |
| PQQ05_RS19985 (4118651) | 4118651..4118989 | - | 339 | WP_001255104.1 | glycine dehydrogenase | - |
| PQQ05_RS19990 (4119277) | 4119277..4119663 | - | 387 | WP_001232231.1 | cytochrome b562 | - |
| PQQ05_RS19995 (4119762) | 4119762..4121114 | - | 1353 | WP_000852999.1 | metalloprotease PmbA | - |
| PQQ05_RS20000 (4121210) | 4121210..4121761 | + | 552 | WP_000166287.1 | ribosome biogenesis factor YjgA | - |
| PQQ05_RS20005 (4121868) | 4121868..4123241 | - | 1374 | WP_274895348.1 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | - |
| PQQ05_RS20010 (4123416) | 4123416..4124414 | + | 999 | WP_274895349.1 | class 1 fructose-bisphosphatase | - |
| PQQ05_RS20015 (4124641) | 4124641..4125171 | + | 531 | WP_000055079.1 | inorganic diphosphatase | - |
| PQQ05_RS20020 (4125581) | 4125581..4126744 | + | 1164 | WP_000977207.1 | metallo-dependent hydrolase | - |
| PQQ05_RS20025 (4126741) | 4126741..4127949 | + | 1209 | WP_274895350.1 | MFS transporter | - |
| PQQ05_RS20030 (4128073) | 4128073..4129080 | - | 1008 | WP_024154186.1 | hypothetical protein ; Integrase | Integrase |
| PQQ05_RS20035 (4129144) | 4129144..4129440 | - | 297 | WP_058644788.1 | helix-turn-helix transcriptional regulator | - |
| PQQ05_RS20040 (4129557) | 4129557..4129964 | + | 408 | WP_024154184.1 | Cox family DNA-binding protein | - |
| PQQ05_RS20045 (4129967) | 4129967..4130143 | + | 177 | WP_154706498.1 | hypothetical protein | - |
| PQQ05_RS20050 (4130176) | 4130176..4130391 | + | 216 | WP_024154183.1 | hypothetical protein | - |
| PQQ05_RS20055 (4130404) | 4130404..4130802 | + | 399 | WP_080108583.1 | hypothetical protein | - |
| PQQ05_RS20060 (4131306) | 4131306..4131497 | + | 192 | WP_023229648.1 | hypothetical protein | - |
| PQQ05_RS20065 (4131573) | 4131573..4132013 | + | 441 | WP_058106650.1 | hypothetical protein | - |
| PQQ05_RS20070 (4132010) | 4132010..4132267 | + | 258 | WP_023207951.1 | hypothetical protein | - |
| PQQ05_RS20075 (4132255) | 4132255..4132788 | + | 534 | WP_080108581.1 | hypothetical protein | - |
| PQQ05_RS20080 (4132785) | 4132785..4133063 | + | 279 | WP_023170325.1 | hypothetical protein | - |
| PQQ05_RS20085 (4133060) | 4133060..4133998 | + | 939 | WP_080108579.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| PQQ05_RS20090 (4133992) | 4133992..4134495 | + | 504 | WP_162803790.1 | AsnC family protein | - |
| PQQ05_RS20095 (4134492) | 4134492..4135511 | + | 1020 | WP_080108577.1 | DNA cytosine methyltransferase | - |
| PQQ05_RS20100 (4135508) | 4135508..4138012 | + | 2505 | WP_080108575.1 | replication endonuclease | - |
| PQQ05_RS20105 (4138005) | 4138005..4138415 | + | 411 | WP_274895351.1 | hypothetical protein | - |
| PQQ05_RS20110 (4138602) | 4138602..4138784 | + | 183 | WP_133208844.1 | IS1595 family transposase ISFiba1 | Transposase |
| PQQ05_RS20115 (4139255) | 4139255..4140304 | - | 1050 | WP_080108573.1 | phage portal protein | - |
| PQQ05_RS20120 (4140304) | 4140304..4142037 | - | 1734 | WP_080108571.1 | terminase family protein | - |
| PQQ05_RS20125 (4142194) | 4142194..4143030 | + | 837 | WP_058112089.1 | GPO family capsid scaffolding protein | - |
| PQQ05_RS20130 (4143054) | 4143054..4144139 | + | 1086 | WP_080108569.1 | phage major capsid protein, P2 family | - |
| PQQ05_RS20135 (4144186) | 4144186..4145016 | + | 831 | WP_024154165.1 | phage terminase small subunit | - |
| PQQ05_RS20140 (4145118) | 4145118..4145612 | + | 495 | WP_274895356.1 | head completion/stabilization protein | - |
| PQQ05_RS20145 (4145612) | 4145612..4145812 | + | 201 | WP_080108567.1 | tail protein X | - |
| PQQ05_RS20150 (4145818) | 4145818..4146180 | + | 363 | WP_227012516.1 | phage holin, lambda family | - |
| PQQ05_RS20155 (4146177) | 4146177..4146620 | + | 444 | WP_058112086.1 | lysozyme | - |
| PQQ05_RS20160 (4146627) | 4146627..4147118 | + | 492 | WP_058112085.1 | lysis protein | - |
| PQQ05_RS20165 (4147105) | 4147105..4147581 | + | 477 | WP_024154161.1 | phage tail protein | - |
| PQQ05_RS20170 (4147578) | 4147578..4148213 | + | 636 | WP_080108565.1 | phage virion morphogenesis protein | - |
| PQQ05_RS20175 (4148234) | 4148234..4148800 | + | 567 | WP_175406647.1 | phage baseplate assembly protein V | - |
| PQQ05_RS20180 (4148797) | 4148797..4149165 | + | 369 | WP_000127183.1 | GPW/gp25 family protein | - |
| PQQ05_RS20185 (4149152) | 4149152..4150048 | + | 897 | WP_080108563.1 | baseplate J/gp47 family protein | - |
| PQQ05_RS20190 (4150041) | 4150041..4150568 | + | 528 | WP_274895362.1 | phage tail protein I | - |
| PQQ05_RS20195 (4150574) | 4150574..4152286 | + | 1713 | WP_080108559.1 | phage tail protein | - |
| PQQ05_RS20200 (4152283) | 4152283..4153107 | + | 825 | WP_274895363.1 | macro domain-containing protein | - |
| PQQ05_RS20205 (4153097) | 4153097..4153672 | + | 576 | WP_099027630.1 | tail fiber assembly protein | - |
| PQQ05_RS20210 (4153713) | 4153713..4154855 | - | 1143 | WP_274895366.1 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| PQQ05_RS20215 (4155139) | 4155139..4155627 | - | 489 | WP_000980424.1 | phage tail protein | - |
| PQQ05_RS20220 (4155641) | 4155641..4158601 | - | 2961 | WP_080108614.1 | phage tail tape measure protein | - |
| PQQ05_RS20225 (4158588) | 4158588..4158752 | - | 165 | WP_024135765.1 | GpE family phage tail protein | - |
| PQQ05_RS20230 (4158752) | 4158752..4159108 | - | 357 | WP_023207923.1 | putative tail protein | - |
| PQQ05_RS20235 (4159151) | 4159151..4159663 | - | 513 | WP_000115856.1 | phage major tail tube protein | - |
| PQQ05_RS20240 (4159664) | 4159664..4160851 | - | 1188 | WP_000003578.1 | phage tail sheath family protein | - |
| PQQ05_RS20245 (4161010) | 4161010..4162140 | + | 1131 | WP_079961684.1 | phage late control D family protein | - |
| PQQ05_RS20250 (4162186) | 4162186..4162467 | + | 282 | WP_024153979.1 | ogr/Delta-like zinc finger family protein | - |
| PQQ05_RS20255 (4162680) | 4162680..4162820 | + | 141 | WP_023229131.1 | Hok/Gef family protein | - |
| PQQ05_RS20260 (4163058) | 4163058..4163402 | - | 345 | WP_001219167.1 | gamma-glutamylcyclotransferase | - |
| PQQ05_RS20265 (4163405) | 4163405..4167184 | - | 3780 | WP_000060827.1 | autotransporter assembly complex protein TamB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|