MGE detailed information
MGE type: Prophage MGE length: 61773 bp
Accession: NZ_CP117326 Location: 2000480..2062252 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM108 Replicon: chromosome
Accession: NZ_CP117326 Location: 2000480..2062252 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM108 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ05_RS09615 () | 1996218..1996670 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| PQQ05_RS09620 () | 1996700..1997440 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PQQ05_RS09625 () | 1997477..1997998 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PQQ05_RS09630 () | 1998000..1998599 | - | 600 | WP_000716750.1 | YebB family permuted papain-like enzyme | - |
| PQQ05_RS09635 () | 1998808..1999500 | + | 693 | WP_000227324.1 | hypothetical protein | - |
| PQQ05_RS09640 () | 1999860..2000471 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQQ05_RS09645 () | 2000480..2001490 | + | 1011 | WP_274895573.1 | Holliday junction branch migration DNA helicase RuvB | - |
| PQQ05_RS09650 () | 2001569..2002354 | - | 786 | WP_000571510.1 | hypothetical protein | VF |
| PQQ05_RS09655 () | 2002351..2003106 | - | 756 | WP_000203023.1 | hypothetical protein | VF |
| PQQ05_RS09660 () | 2003185..2004129 | + | 945 | WP_000939594.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQQ05_RS09665 () | 2004145..2005464 | + | 1320 | WP_001184031.1 | murein DD-endopeptidase MepM | - |
| PQQ05_RS09670 () | 2005581..2006552 | + | 972 | WP_000448401.1 | hypothetical protein | VF |
| PQQ05_RS09675 () | 2006625..2008067 | - | 1443 | WP_274895122.1 | pyruvate kinase | - |
| PQQ05_RS09680 () | 2008191..2009060 | - | 870 | WP_001056719.1 | MurR/RpiR family transcriptional regulator | - |
| PQQ05_RS09685 () | 2009402..2010877 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| PQQ05_RS09690 () | 2011112..2012923 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| PQQ05_RS09695 () | 2012961..2013602 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ05_RS09700 () | 2013702..2014880 | - | 1179 | WP_000173429.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ05_RS09705 () | 2015011..2015301 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ05_RS09710 () | 2015369..2015722 | + | 354 | WP_001042123.1 | protein YebF | - |
| PQQ05_RS09715 () | 2015816..2016475 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQQ05_RS09720 () | 2016689..2018740 | + | 2052 | WP_000936997.1 | oligopeptidase B | - |
| PQQ05_RS09725 () | 2018777..2019475 | - | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
| PQQ05_RS09730 () | 2019526..2020155 | - | 630 | WP_274895574.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ05_RS09735 () | 2020263..2020493 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ05_RS09740 () | 2020631..2021005 | + | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| PQQ05_RS09745 () | 2021006..2021881 | + | 876 | WP_000979686.1 | copper homeostasis membrane protein CopD | - |
| PQQ05_RS09750 () | 2021898..2022251 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2022351..2022496 | - | 146 | - | - | Antitoxin Detail |
| - | 2022391..2022494 | + | 104 | - | - | Toxin Detail |
| PQQ05_RS09755 () | 2022624..2023703 | - | 1080 | WP_000087646.1 | 3-hydroxybutyryl-CoA dehydrogenase ; Integrase | Integrase |
| PQQ05_RS09760 () | 2023733..2024728 | - | 996 | Protein_1905 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQQ05_RS09765 () | 2024876..2025124 | + | 249 | Protein_1906 | glycoside hydrolase family 19 protein | - |
| PQQ05_RS09770 () | 2025121..2025655 | + | 535 | Protein_1907 | DUF2514 domain-containing protein | - |
| PQQ05_RS09775 () | 2025912..2026079 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ05_RS09780 () | 2026144..2026332 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQQ05_RS09785 () | 2026387..2026647 | + | 261 | Protein_1910 | DUF1441 family protein | - |
| PQQ05_RS09790 () | 2026862..2027206 | + | 345 | Protein_1911 | macro domain-containing protein | - |
| PQQ05_RS09795 () | 2027216..2027686 | + | 471 | Protein_1912 | tail fiber assembly protein | - |
| PQQ05_RS09800 () | 2027783..2027983 | - | 201 | WP_031604217.1 | PagK family vesicle-borne virulence factor | - |
| PQQ05_RS09805 () | 2028372..2028552 | - | 181 | Protein_1914 | IS3 family transposase | - |
| PQQ05_RS09810 () | 2028552..2028677 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQQ05_RS09815 () | 2029191..2029337 | - | 147 | WP_000951652.1 | hypothetical protein | - |
| PQQ05_RS09820 () | 2029331..2029498 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ05_RS09825 () | 2029825..2030439 | - | 615 | WP_000848072.1 | disulfide bond formation protein B | - |
| PQQ05_RS09830 () | 2030449..2030607 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ05_RS09835 () | 2030740..2031654 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| PQQ05_RS09840 () | 2032949..2033371 | - | 423 | Protein_1921 | Protein flp ; Integrase | Integrase |
| PQQ05_RS09845 () | 2033441..2034635 | + | 1195 | Protein_1922 | IS256 family transposase IS285 | Transposase |
| PQQ05_RS09850 () | 2034781..2034921 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ05_RS09855 () | 2035086..2035355 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ05_RS09860 () | 2035725..2036144 | + | 420 | WP_080108735.1 | GNAT family N-acetyltransferase | - |
| PQQ05_RS09865 () | 2036379..2037470 | - | 1092 | Protein_1926 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| PQQ05_RS09870 () | 2038360..2039098 | - | 739 | Protein_1927 | hypothetical protein ; Integrase | Integrase |
| PQQ05_RS09875 () | 2039217..2040230 | - | 1014 | WP_023168584.1 | acyltransferase family protein | - |
| PQQ05_RS09880 () | 2040927..2041130 | - | 204 | WP_000774038.1 | hypothetical protein | VF |
| PQQ05_RS09885 () | 2041314..2041559 | - | 246 | WP_001051755.1 | hypothetical protein | - |
| PQQ05_RS09890 () | 2042758..2042967 | + | 210 | WP_000974708.1 | CZB domain-containing protein | - |
| PQQ05_RS09895 () | 2043195..2043671 | - | 477 | WP_000030945.1 | hypothetical protein | - |
| PQQ05_RS09900 () | 2043987..2044382 | - | 396 | WP_000422887.1 | DUF1398 domain-containing protein | - |
| PQQ05_RS09905 () | 2045066..2045788 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| PQQ05_RS09910 () | 2046073..2046237 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQQ05_RS09915 () | 2046461..2047111 | + | 651 | WP_000986175.1 | protein-serine/threonine phosphatase | - |
| PQQ05_RS09920 () | 2047130..2047321 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQQ05_RS09925 () | 2047432..2047668 | - | 237 | WP_024131167.1 | YebV family protein | - |
| PQQ05_RS09930 () | 2047786..2049225 | - | 1440 | Protein_1939 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ05_RS09935 () | 2049303..2051936 | - | 2634 | WP_001521100.1 | hypothetical protein | VF |
| PQQ05_RS09940 () | 2051905..2053188 | - | 1284 | WP_080108619.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ05_RS09945 () | 2053317..2053814 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ05_RS09950 () | 2053912..2054598 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQQ05_RS09955 () | 2054618..2056666 | + | 2049 | WP_274895575.1 | carboxy terminal-processing peptidase | - |
| PQQ05_RS09960 () | 2056859..2057740 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQQ05_RS09965 () | 2057788..2059161 | - | 1374 | WP_000416146.1 | MFS transporter | - |
| PQQ05_RS09970 () | 2059337..2060128 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQQ05_RS09975 () | 2060340..2060579 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQQ05_RS09980 () | 2060737..2060880 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQQ05_RS09985 () | 2060951..2061238 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQQ05_RS09990 () | 2061887..2062030 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQQ05_RS09995 () | 2062043..2062252 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQQ05_RS10000 () | 2062472..2064217 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQQ05_RS10005 () | 2064283..2065092 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQQ05_RS10010 () | 2065089..2065655 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQQ05_RS10015 () | 2066065..2066523 | - | 459 | WP_274895576.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|