MGE detailed information
MGE type: Genomic_island MGE length: 35712 bp
Accession: NZ_CP117307 Location: 3596540..3632251 Organism: Salmonella enterica subsp. enterica serovar Derby strain RM004 Replicon: chromosome
Accession: NZ_CP117307 Location: 3596540..3632251 Organism: Salmonella enterica subsp. enterica serovar Derby strain RM004 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ01_RS17505 () | 3592096..3594540 | + | 2445 | WP_023209690.1 | acyl-CoA dehydrogenase FadE | - |
| PQQ01_RS17510 () | 3594649..3595416 | + | 768 | WP_274890732.1 | amidohydrolase | - |
| PQQ01_RS17515 () | 3595787..3596194 | + | 408 | WP_000788200.1 | Spy/CpxP family protein refolding chaperone | - |
| PQQ01_RS17520 () | 3596540..3597259 | + | 720 | WP_000787603.1 | Outer membrane protein PagN | VF |
| PQQ01_RS17525 () | 3597263..3597477 | - | 215 | Protein_3429 | hypothetical protein | - |
| PQQ01_RS17530 () | 3597597..3598544 | - | 948 | WP_000970302.1 | LysR family transcriptional regulator | - |
| PQQ01_RS17535 () | 3599038..3599278 | - | 241 | Protein_3431 | PerC family transcriptional regulator | - |
| PQQ01_RS17540 () | 3599361..3600182 | - | 822 | WP_000119391.1 | polysaccharide deacetylase family protein | - |
| PQQ01_RS17545 () | 3600590..3601060 | - | 471 | WP_023231370.1 | AfaD family invasin | - |
| PQQ01_RS17550 () | 3601082..3603592 | - | 2511 | WP_023231369.1 | F1 capsule-anchoring protein | VF |
| PQQ01_RS17555 () | 3603616..3604356 | - | 741 | WP_000691916.1 | Chaperone protein caf1M | VF |
| PQQ01_RS17560 () | 3604431..3604928 | - | 498 | WP_048348967.1 | Saf-pilin pilus formation protein SafA | - |
| PQQ01_RS17565 () | 3605677..3606381 | - | 705 | Protein_3437 | integrase core domain-containing protein | - |
| PQQ01_RS17570 () | 3606434..3606748 | + | 315 | WP_023892102.1 | SymE family type I addiction module toxin | - |
| PQQ01_RS17575 () | 3606815..3607093 | - | 279 | WP_012543321.1 | hypothetical protein | - |
| PQQ01_RS17580 () | 3607411..3607878 | - | 468 | WP_023232370.1 | hypothetical protein | - |
| PQQ01_RS17585 () | 3608751..3608984 | - | 234 | WP_124741005.1 | hypothetical protein | - |
| - | 3609162..3609574 | - | 413 | - | - | Antitoxin Detail |
| PQQ01_RS17590 () | 3609309..3609584 | + | 276 | WP_023232369.1 | SymE family type I addiction module toxin | Toxin Detail |
| PQQ01_RS17595 () | 3609641..3609973 | - | 333 | WP_001750702.1 | barstar family protein | - |
| PQQ01_RS17600 () | 3609973..3614667 | - | 4695 | WP_223124460.1 | RHS repeat-associated core domain-containing protein | - |
| PQQ01_RS17605 () | 3614683..3615141 | - | 459 | WP_000186514.1 | DcrB-related protein | - |
| PQQ01_RS17610 () | 3615201..3617435 | - | 2235 | WP_023232367.1 | hypothetical protein | VF |
| PQQ01_RS17615 () | 3617831..3618352 | - | 522 | WP_000968384.1 | DUF2778 domain-containing protein | - |
| PQQ01_RS17620 () | 3618376..3618792 | - | 417 | WP_001596567.1 | DUF2195 family protein | - |
| PQQ01_RS17625 () | 3618789..3618884 | - | 96 | Protein_3449 | cytoplasmic protein | - |
| PQQ01_RS17630 () | 3618920..3619381 | - | 462 | WP_001529547.1 | hypothetical protein | - |
| PQQ01_RS17635 () | 3619366..3619836 | - | 471 | WP_000528843.1 | glucosaminidase domain-containing protein | - |
| PQQ01_RS17640 () | 3619879..3620646 | - | 768 | WP_023232366.1 | TagF domain-containing protein | - |
| PQQ01_RS17645 () | 3620646..3624515 | - | 3870 | WP_023232365.1 | hypothetical protein | VF |
| PQQ01_RS17650 () | 3624752..3625246 | - | 495 | WP_023216589.1 | T6SS effector amidase Tae4 family protein | - |
| PQQ01_RS17655 () | 3625243..3626028 | - | 786 | WP_023232364.1 | Rap1a/Tai family immunity protein | - |
| PQQ01_RS17660 () | 3626033..3627337 | - | 1305 | WP_023232363.1 | Peptidoglycan-associated lipoprotein | VF |
| PQQ01_RS17665 () | 3627334..3628677 | - | 1344 | WP_000118732.1 | hypothetical protein | VF |
| PQQ01_RS17670 () | 3628681..3629217 | - | 537 | WP_023206382.1 | hypothetical protein | VF |
| PQQ01_RS17675 () | 3629284..3629769 | - | 486 | WP_000119443.1 | Protein hcp1 | VF |
| PQQ01_RS17680 () | 3629912..3630295 | - | 384 | WP_000379146.1 | type VI secretion system amidase immunity protein Tai4 | - |
| PQQ01_RS17685 () | 3630280..3630765 | - | 486 | WP_001081550.1 | T6SS effector amidase Tae4 family protein | - |
| PQQ01_RS17690 () | 3630808..3631002 | - | 195 | Protein_3462 | type VI secretion system lipoprotein TssJ | - |
| PQQ01_RS17695 () | 3631069..3631554 | - | 486 | WP_000312802.1 | Protein hcp1 | VF |
| PQQ01_RS17700 () | 3631808..3632140 | - | 333 | WP_014344502.1 | hypothetical protein | - |
| PQQ01_RS17705 () | 3632264..3632374 | - | 111 | WP_010988967.1 | BPSL0067 family protein | - |
| PQQ01_RS17710 () | 3632437..3633945 | - | 1509 | WP_000013884.1 | type VI secretion system contractile sheath large subunit | - |
| PQQ01_RS17715 () | 3633969..3634511 | - | 543 | WP_000996815.1 | type VI secretion system contractile sheath small subunit | - |
| PQQ01_RS17720 () | 3634611..3637250 | - | 2640 | WP_023232361.1 | type VI secretion system ATPase TssH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|