MGE detailed information
MGE type: Mobilizable plasmid MGE length: 62042 bp
Accession: NZ_CP117297 Location: 1..62042 Organism: Limosilactobacillus portuensis strain LV1276_C155 Replicon: plasmid pLV1
Accession: NZ_CP117297 Location: 1..62042 Organism: Limosilactobacillus portuensis strain LV1276_C155 Replicon: plasmid pLV1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PRK60_RS09680 (PRK60_09680) | 1..1110 | + | 1110 | WP_273646476.1 | replication initiator protein A | - |
| PRK60_RS09685 (PRK60_09685) | 1250..1447 | + | 198 | WP_273646477.1 | hypothetical protein | - |
| PRK60_RS09690 (PRK60_09690) | 1498..2244 | + | 747 | WP_273646478.1 | Fic family protein | - |
| PRK60_RS09695 (PRK60_09695) | 2570..2847 | + | 278 | Protein_3 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| PRK60_RS09700 (PRK60_09700) | 2894..3079 | + | 186 | WP_049174165.1 | hypothetical protein | - |
| PRK60_RS09705 (PRK60_09705) | 3076..3630 | + | 555 | WP_273646479.1 | zeta toxin family protein | - |
| PRK60_RS09710 (PRK60_09710) | 3620..3898 | - | 279 | WP_003649842.1 | hypothetical protein | - |
| PRK60_RS09715 (PRK60_09715) | 3921..4148 | - | 228 | WP_082232462.1 | hypothetical protein | - |
| PRK60_RS09720 (PRK60_09720) | 4399..6462 | + | 2064 | WP_273646480.1 | hypothetical protein | Relaxase |
| PRK60_RS09725 (PRK60_09725) | 6854..6916 | - | 63 | WP_222843308.1 | putative holin-like toxin | - |
| PRK60_RS09730 (PRK60_09730) | 7408..8757 | + | 1350 | WP_273646481.1 | FAD-dependent oxidoreductase | - |
| PRK60_RS09735 (PRK60_09735) | 9295..9363 | - | 69 | WP_273646492.1 | hypothetical protein | - |
| PRK60_RS09740 (PRK60_09740) | 9675..12221 | - | 2547 | WP_273646482.1 | GbpC/Spa domain-containing protein | - |
| PRK60_RS09745 (PRK60_09745) | 12691..13308 | + | 618 | WP_273646483.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| PRK60_RS09750 (PRK60_09750) | 13533..14093 | - | 561 | WP_273646484.1 | DNA-3-methyladenine glycosylase I | - |
| PRK60_RS09755 (PRK60_09755) | 14279..15631 | - | 1353 | WP_273646485.1 | MFS transporter | - |
| PRK60_RS09760 (PRK60_09760) | 15676..15912 | - | 237 | Protein_16 | ThiF family adenylyltransferase | - |
| PRK60_RS09765 (PRK60_09765) | 16009..17115 | + | 1107 | WP_273646486.1 | DUF5937 family protein | - |
| PRK60_RS09770 (PRK60_09770) | 17112..17684 | + | 573 | WP_273646487.1 | hypothetical protein | - |
| PRK60_RS09775 (PRK60_09775) | 17724..18596 | - | 873 | WP_273646488.1 | IS3 family transposase ISEnfa5 | Transposase |
| PRK60_RS09780 (PRK60_09780) | 18593..19157 | - | 565 | Protein_20 | IS3 family transposase ISSth1b | Transposase |
| PRK60_RS09785 (PRK60_09785) | 19392..19847 | - | 456 | WP_065169810.1 | MarR family transcriptional regulator | - |
| PRK60_RS09790 (PRK60_09790) | 20011..20700 | + | 690 | WP_065169809.1 | putative ABC transporter ATP-binding protein | VF |
| PRK60_RS09795 (PRK60_09795) | 20704..22956 | + | 2253 | WP_273646489.1 | ABC transporter permease | - |
| PRK60_RS09800 (PRK60_09800) | 23634..25982 | - | 2349 | WP_273646490.1 | hypothetical protein | VF |
| PRK60_RS09805 (PRK60_09805) | 26559..27941 | - | 1383 | WP_273646491.1 | MFS transporter | - |
| PRK60_RS09810 (PRK60_09810) | 28218..28706 | + | 489 | WP_195235839.1 | Rrf2 family transcriptional regulator | - |
| PRK60_RS09815 (PRK60_09815) | 29019..29153 | - | 135 | Protein_27 | UV-resistance | - |
| PRK60_RS09820 (PRK60_09820) | 29395..29457 | - | 63 | WP_222843308.1 | putative holin-like toxin | - |
| PRK60_RS09825 (PRK60_09825) | 29931..30830 | - | 900 | WP_102169381.1 | IS3 family transposase IS1223 | Transposase |
| PRK60_RS09830 (PRK60_09830) | 30827..31360 | - | 534 | WP_102169382.1 | IS3 family transposase IS1223 | Transposase |
| PRK60_RS09835 (PRK60_09835) | 31500..31952 | - | 453 | WP_054193997.1 | hypothetical protein | - |
| PRK60_RS09840 (PRK60_09840) | 31945..32463 | - | 519 | WP_273646450.1 | LysM domain-containing protein | - |
| PRK60_RS09845 (PRK60_09845) | 32471..32653 | - | 183 | Protein_33 | nucleotidyltransferase | - |
| PRK60_RS09850 (PRK60_09850) | 32908..32961 | - | 54 | WP_237738382.1 | hypothetical protein | - |
| PRK60_RS09855 (PRK60_09855) | 33311..33577 | - | 267 | WP_273646451.1 | hypothetical protein | - |
| PRK60_RS09860 (PRK60_09860) | 34161..34505 | - | 345 | WP_273646452.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| PRK60_RS09865 (PRK60_09865) | 34499..34762 | - | 264 | WP_273646453.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| PRK60_RS09870 (PRK60_09870) | 34849..35082 | + | 234 | WP_023192324.1 | hypothetical protein | - |
| PRK60_RS09875 (PRK60_09875) | 35187..35771 | + | 585 | WP_273646454.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| PRK60_RS09880 (PRK60_09880) | 36112..36660 | - | 549 | WP_003712348.1 | isochorismatase family cysteine hydrolase | - |
| PRK60_RS09885 (PRK60_09885) | 36662..38101 | - | 1440 | WP_273646455.1 | nicotinate phosphoribosyltransferase | - |
| PRK60_RS09890 (PRK60_09890) | 38217..38921 | - | 705 | WP_273646456.1 | NUDIX domain-containing protein | - |
| PRK60_RS09895 (PRK60_09895) | 39144..39452 | - | 309 | WP_060463328.1 | TetR/AcrR family transcriptional regulator | - |
| PRK60_RS09900 (PRK60_09900) | 39472..39699 | + | 228 | WP_273646457.1 | hypothetical protein | - |
| PRK60_RS09905 (PRK60_09905) | 39892..40425 | + | 534 | WP_102169382.1 | IS3 family transposase IS1223 | Transposase |
| PRK60_RS09910 (PRK60_09910) | 40434..41321 | + | 888 | WP_260846181.1 | IS3 family transposase IS1223 | Transposase |
| PRK60_RS09915 (PRK60_09915) | 41404..41691 | - | 288 | WP_273646458.1 | hypothetical protein | - |
| PRK60_RS09920 (PRK60_09920) | 42115..42675 | + | 561 | WP_273646459.1 | tyrosine-type recombinase/integrase | - |
| PRK60_RS09925 (PRK60_09925) | 42852..43142 | + | 291 | WP_003714205.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| PRK60_RS09930 (PRK60_09930) | 43225..44033 | + | 809 | Protein_50 | IS256 family transposase ISPeth3 | Transposase |
| PRK60_RS09935 (PRK60_09935) | 44298..44750 | - | 453 | WP_054193997.1 | hypothetical protein | - |
| PRK60_RS09940 (PRK60_09940) | 45137..45763 | - | 627 | WP_273646460.1 | hypothetical protein | - |
| PRK60_RS09945 (PRK60_09945) | 46088..46258 | - | 171 | WP_273646461.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| PRK60_RS09950 (PRK60_09950) | 46448..46735 | + | 288 | WP_273646462.1 | hypothetical protein | - |
| PRK60_RS09955 (PRK60_09955) | 47407..47517 | - | 111 | Protein_55 | IS30 family transposase | - |
| PRK60_RS09960 (PRK60_09960) | 47871..48317 | + | 447 | WP_273646463.1 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ | VF |
| PRK60_RS09965 (PRK60_09965) | 48394..48834 | + | 441 | WP_273646464.1 | MarR family transcriptional regulator | - |
| PRK60_RS09970 (PRK60_09970) | 48853..49818 | + | 966 | WP_273646465.1 | beta-ketoacyl-ACP synthase III | - |
| PRK60_RS09975 (PRK60_09975) | 49852..50103 | + | 252 | WP_273646466.1 | Acyl carrier protein | VF |
| PRK60_RS09980 (PRK60_09980) | 50103..51032 | + | 930 | WP_273646467.1 | ACP S-malonyltransferase | - |
| PRK60_RS09985 (PRK60_09985) | 51023..51754 | + | 732 | WP_273646468.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| PRK60_RS09990 (PRK60_09990) | 51765..52997 | + | 1233 | WP_273646469.1 | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | VF |
| PRK60_RS09995 (PRK60_09995) | 53005..53448 | + | 444 | WP_003714183.1 | acetyl-CoA carboxylase biotin carboxyl carrier protein | - |
| PRK60_RS10000 (PRK60_10000) | 53450..53884 | + | 435 | WP_273646470.1 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ | VF |
| PRK60_RS10005 (PRK60_10005) | 53899..55290 | + | 1392 | WP_273646471.1 | acetyl-CoA carboxylase biotin carboxylase subunit | - |
| PRK60_RS10010 (PRK60_10010) | 55268..56104 | + | 837 | WP_124031311.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| PRK60_RS10015 (PRK60_10015) | 56094..56879 | + | 786 | WP_273646472.1 | carboxyltransferase subunit alpha | - |
| PRK60_RS10020 (PRK60_10020) | 56897..57661 | + | 765 | WP_273646473.1 | enoyl-ACP reductase FabI | - |
| PRK60_RS10025 (PRK60_10025) | 57661..58458 | + | 798 | WP_273646493.1 | biotin--[acetyl-CoA-carboxylase] ligase | - |
| PRK60_RS10030 (PRK60_10030) | 58628..58891 | - | 264 | WP_273646474.1 | SemiSWEET family transporter | - |
| PRK60_RS10035 (PRK60_10035) | 58915..59139 | - | 225 | Protein_71 | ROK family protein | - |
| PRK60_RS10040 (PRK60_10040) | 59153..59360 | - | 208 | Protein_72 | IS30 family transposase IS1382 | Transposase |
| PRK60_RS10045 (PRK60_10045) | 59582..59881 | + | 300 | WP_003712280.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| PRK60_RS10050 (PRK60_10050) | 59878..60213 | + | 336 | WP_124031307.1 | type II toxin-antitoxin system YafQ family toxin | - |
| PRK60_RS10055 (PRK60_10055) | 60369..61175 | + | 807 | WP_273646475.1 | Sporulation initiation inhibitor protein Soj | VF |
| PRK60_RS10060 (PRK60_10060) | 61189..61437 | + | 249 | WP_003712273.1 | ribbon-helix-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|