MGE detailed information
MGE type: Mobilizable plasmid MGE length: 104612 bp
Accession: NZ_CP117228 Location: 1..104612 Organism: Listeria innocua strain ATCC 33090 Replicon: plasmid pATCC33090_1
Accession: NZ_CP117228 Location: 1..104612 Organism: Listeria innocua strain ATCC 33090 Replicon: plasmid pATCC33090_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ29_RS00005 (PQQ29_00005) | 1..1635 | + | 1635 | WP_003728500.1 | primase C-terminal domain-containing protein | - |
| PQQ29_RS00010 (PQQ29_00010) | 1910..2665 | + | 756 | WP_003728499.1 | hypothetical protein | - |
| PQQ29_RS00015 (PQQ29_00015) | 2699..3286 | - | 588 | WP_023553716.1 | IS3 family transposase IS-LL6 | Transposase |
| PQQ29_RS00020 (PQQ29_00020) | 3378..4133 | - | 756 | Protein_3 | IS21 family transposase IS712 | Transposase |
| PQQ29_RS00025 (PQQ29_00025) | 4144..5370 | - | 1227 | WP_187984146.1 | IS21 family transposase IS712 | Transposase |
| PQQ29_RS00030 (PQQ29_00030) | 5540..5698 | + | 159 | Protein_5 | NlpC/P60 family protein | - |
| PQQ29_RS00035 (PQQ29_00035) | 5913..6302 | + | 390 | WP_003731844.1 | hypothetical protein | - |
| PQQ29_RS00040 (PQQ29_00040) | 6305..7222 | + | 918 | WP_003728493.1 | hypothetical protein | - |
| PQQ29_RS00045 (PQQ29_00045) | 7621..7860 | + | 240 | WP_011011016.1 | hypothetical protein | - |
| PQQ29_RS00050 (PQQ29_00050) | 7872..8312 | + | 441 | WP_011011015.1 | hypothetical protein | - |
| PQQ29_RS00055 (PQQ29_00055) | 8305..9645 | + | 1341 | WP_025370664.1 | hypothetical protein | Relaxase |
| PQQ29_RS00060 (PQQ29_00060) | 9656..10018 | + | 363 | WP_031641939.1 | hypothetical protein | - |
| PQQ29_RS00065 (PQQ29_00065) | 10038..10802 | + | 765 | WP_025370662.1 | Fic family protein | - |
| PQQ29_RS00070 (PQQ29_00070) | 10916..11446 | + | 531 | WP_003728487.1 | hypothetical protein | - |
| PQQ29_RS00075 (PQQ29_00075) | 11483..11818 | - | 336 | WP_003728486.1 | helix-turn-helix transcriptional regulator | - |
| PQQ29_RS00080 (PQQ29_00080) | 11992..12390 | + | 399 | WP_011011011.1 | hypothetical protein | - |
| PQQ29_RS00085 (PQQ29_00085) | 12394..14577 | + | 2184 | WP_223196601.1 | class I SAM-dependent methyltransferase | - |
| PQQ29_RS00090 (PQQ29_00090) | 14749..15975 | + | 1227 | WP_227665703.1 | IS21 family transposase IS712 | Transposase |
| PQQ29_RS00095 (PQQ29_00095) | 15986..16741 | + | 756 | WP_013315180.1 | IS21 family transposase IS712 | Transposase |
| PQQ29_RS00100 (PQQ29_00100) | 16819..17112 | - | 294 | WP_011011055.1 | DUF3116 family protein | - |
| PQQ29_RS00105 (PQQ29_00105) | 17129..18283 | - | 1155 | WP_061385306.1 | cation:proton antiporter | - |
| PQQ29_RS00110 (PQQ29_00110) | 18430..19644 | - | 1215 | WP_064659124.1 | phosphopyruvate hydratase | - |
| PQQ29_RS00115 (PQQ29_00115) | 19693..20837 | + | 1145 | WP_227665701.1 | IS3 family transposase IS-LL6 | Transposase |
| PQQ29_RS00120 (PQQ29_00120) | 21009..21251 | - | 243 | WP_023559417.1 | hypothetical protein | - |
| PQQ29_RS00125 (PQQ29_00125) | 21395..21670 | + | 276 | WP_223196600.1 | hypothetical protein | - |
| PQQ29_RS00130 (PQQ29_00130) | 21655..22149 | + | 495 | WP_031644351.1 | hypothetical protein | - |
| PQQ29_RS00135 (PQQ29_00135) | 22168..22545 | + | 378 | WP_031670069.1 | hypothetical protein | - |
| PQQ29_RS00140 (PQQ29_00140) | 22773..23318 | + | 546 | WP_011011051.1 | hypothetical protein | - |
| PQQ29_RS00145 (PQQ29_00145) | 23452..23688 | + | 237 | WP_003725271.1 | helix-turn-helix transcriptional regulator | - |
| PQQ29_RS00150 (PQQ29_00150) | 23695..24684 | + | 990 | WP_187983847.1 | hypothetical protein | - |
| PQQ29_RS00160 (PQQ29_00160) | 26551..26670 | + | 120 | Protein_31 | plasmid replication protein | - |
| PQQ29_RS00165 (PQQ29_00165) | 26808..30002 | + | 3195 | WP_187983846.1 | helicase-related protein | - |
| PQQ29_RS00170 (PQQ29_00170) | 30003..30560 | + | 558 | WP_058831731.1 | hypothetical protein | - |
| PQQ29_RS00175 (PQQ29_00175) | 30563..32404 | + | 1842 | WP_058831732.1 | site-specific DNA-methyltransferase | - |
| PQQ29_RS00180 (PQQ29_00180) | 32439..35555 | + | 3117 | WP_058831733.1 | DEAD/DEAH box helicase family protein | - |
| PQQ29_RS00185 (PQQ29_00185) | 35669..35840 | - | 172 | Protein_36 | type II toxin-antitoxin system YafQ family toxin | - |
| PQQ29_RS00190 (PQQ29_00190) | 35835..35969 | - | 135 | Protein_37 | IS5 family transposase ISCARN82 | Transposase |
| PQQ29_RS00195 (PQQ29_00195) | 36250..36681 | + | 432 | WP_002816262.1 | CopY/TcrY family copper transport repressor | - |
| PQQ29_RS00200 (PQQ29_00200) | 36932..39178 | + | 2247 | WP_058831734.1 | heavy metal translocating P-type ATPase | - |
| PQQ29_RS00205 (PQQ29_00205) | 39315..42230 | - | 2916 | WP_003728469.1 | Tn3 family transposase Tn4430 | Transposase |
| PQQ29_RS00210 (PQQ29_00210) | 42234..42788 | - | 555 | WP_003728468.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| PQQ29_RS00215 (PQQ29_00215) | 43068..43427 | + | 360 | WP_003728467.1 | Cd(II)-sensing metalloregulatory transcriptional repressor CadC | - |
| PQQ29_RS00220 (PQQ29_00220) | 43427..45562 | + | 2136 | WP_003728466.1 | putative cadmium-transporting ATPase | VF |
| PQQ29_RS00225 (PQQ29_00225) | 45940..46254 | + | 315 | WP_068995972.1 | hypothetical protein | - |
| PQQ29_RS00230 (PQQ29_00230) | 46279..46965 | + | 687 | WP_068995971.1 | hypothetical protein | VF |
| PQQ29_RS00235 (PQQ29_00235) | 47078..47314 | + | 237 | WP_068995970.1 | hypothetical protein | - |
| PQQ29_RS00240 (PQQ29_00240) | 47332..47616 | + | 285 | WP_068995969.1 | TrbC/VirB2 family protein | - |
| PQQ29_RS00245 (PQQ29_00245) | 47667..49811 | + | 2145 | WP_068995968.1 | hypothetical protein | - |
| PQQ29_RS00250 (PQQ29_00250) | 49854..50405 | + | 552 | WP_031642452.1 | hypothetical protein | - |
| PQQ29_RS00255 (PQQ29_00255) | 50409..52679 | + | 2271 | WP_068995967.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PQQ29_RS00260 (PQQ29_00260) | 52698..53378 | - | 681 | WP_002389568.1 | IS6 family transposase IS1216E | Transposase |
| PQQ29_RS00265 (PQQ29_00265) | 53454..53810 | - | 357 | Protein_52 | IS6 family transposase IS1216E | Transposase |
| PQQ29_RS00270 (PQQ29_00270) | 54002..55366 | + | 1365 | WP_003728481.1 | FAD-dependent oxidoreductase | - |
| PQQ29_RS00275 (PQQ29_00275) | 55612..56481 | - | 870 | WP_003728480.1 | glycine betaine ABC transporter substrate-binding protein | - |
| PQQ29_RS00280 (PQQ29_00280) | 56602..56841 | + | 240 | WP_003728479.1 | DUF6339 family protein | - |
| PQQ29_RS00285 (PQQ29_00285) | 56841..57161 | + | 321 | WP_003750113.1 | DUF6339 family protein | - |
| PQQ29_RS00290 (PQQ29_00290) | 57352..58116 | + | 765 | WP_176867842.1 | ISLre2 family transposase ISAot1 | Transposase |
| PQQ29_RS00295 (PQQ29_00295) | 58579..60462 | + | 1884 | WP_003728476.1 | Zinc-transporting ATPase | VF |
| PQQ29_RS00300 (PQQ29_00300) | 60533..61084 | - | 552 | Protein_59 | CadD family cadmium resistance transporter | - |
| PQQ29_RS00305 (PQQ29_00305) | 61264..61945 | - | 682 | Protein_60 | IS6 family transposase | - |
| PQQ29_RS00310 (PQQ29_00310) | 62007..62540 | + | 534 | WP_096816752.1 | site-specific integrase | - |
| PQQ29_RS00315 (PQQ29_00315) | 63084..63449 | + | 366 | WP_003131442.1 | hypothetical protein | Relaxase |
| PQQ29_RS00320 (PQQ29_00320) | 63428..64660 | + | 1233 | WP_068995964.1 | hypothetical protein | Relaxase |
| PQQ29_RS00325 (PQQ29_00325) | 64657..65280 | + | 624 | WP_068995963.1 | mobilization protein | - |
| PQQ29_RS00330 (PQQ29_00330) | 65297..65899 | + | 603 | WP_003131447.1 | Fic family protein | - |
| PQQ29_RS00335 (PQQ29_00335) | 66237..67394 | + | 1158 | WP_039115947.1 | RepB family plasmid replication initiator protein | - |
| PQQ29_RS00340 (PQQ29_00340) | 67394..68023 | + | 630 | WP_226319492.1 | DNA-binding protein | - |
| PQQ29_RS00345 (PQQ29_00345) | 68034..69422 | + | 1389 | Protein_68 | DEAD/DEAH box helicase family protein | - |
| PQQ29_RS00350 (PQQ29_00350) | 69477..70157 | - | 681 | WP_005875647.1 | IS6 family transposase ISEnfa1 | Transposase |
| PQQ29_RS00355 (PQQ29_00355) | 70221..70424 | + | 204 | WP_068995962.1 | hypothetical protein | - |
| PQQ29_RS00360 (PQQ29_00360) | 70650..71000 | - | 351 | WP_068995961.1 | DUF2178 domain-containing protein | - |
| PQQ29_RS00365 (PQQ29_00365) | 70990..71229 | - | 240 | WP_068995960.1 | hypothetical protein | VF |
| PQQ29_RS00370 (PQQ29_00370) | 71448..71975 | + | 528 | WP_068995959.1 | hypothetical protein | - |
| PQQ29_RS00375 (PQQ29_00375) | 71977..72486 | + | 510 | WP_068995958.1 | hypothetical protein | VF |
| PQQ29_RS00380 (PQQ29_00380) | 72483..73043 | + | 561 | WP_068995957.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| PQQ29_RS00385 (PQQ29_00385) | 73594..74745 | + | 1152 | WP_068995956.1 | RepB family plasmid replication initiator protein | - |
| PQQ29_RS00390 (PQQ29_00390) | 74756..74968 | + | 213 | WP_068995955.1 | hypothetical protein | - |
| PQQ29_RS00395 (PQQ29_00395) | 74961..75497 | + | 537 | WP_068995954.1 | HTH domain-containing protein | - |
| PQQ29_RS00400 (PQQ29_00400) | 75830..76420 | + | 591 | WP_055308612.1 | ISNCY family transposase ISH7A | Transposase |
| PQQ29_RS00405 (PQQ29_00405) | 76564..76908 | + | 345 | WP_002375364.1 | PadR family transcriptional regulator | - |
| PQQ29_RS00410 (PQQ29_00410) | 76898..77719 | + | 822 | WP_061775510.1 | hypothetical protein | - |
| PQQ29_RS00415 (PQQ29_00415) | 77825..78411 | + | 587 | Protein_82 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| PQQ29_RS00420 (PQQ29_00420) | 78392..78718 | + | 327 | WP_068995953.1 | hypothetical protein | - |
| PQQ29_RS00425 (PQQ29_00425) | 78799..79479 | + | 681 | WP_176714219.1 | IS6 family transposase ISEnfa1 | Transposase |
| PQQ29_RS00430 (PQQ29_00430) | 79714..79935 | + | 222 | WP_068995951.1 | DUF6290 family protein | Antitoxin Detail |
| PQQ29_RS00435 (PQQ29_00435) | 79932..80207 | + | 276 | WP_068995950.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ29_RS00440 (PQQ29_00440) | 80229..80408 | + | 180 | WP_068995949.1 | hypothetical protein | - |
| PQQ29_RS00445 (PQQ29_00445) | 80442..82346 | + | 1905 | WP_070232215.1 | hypothetical protein | - |
| PQQ29_RS00450 (PQQ29_00450) | 82362..82634 | + | 273 | WP_068995947.1 | DUF5592 family protein | - |
| PQQ29_RS00455 (PQQ29_00455) | 82636..83175 | + | 540 | WP_077316130.1 | hypothetical protein | - |
| PQQ29_RS00460 (PQQ29_00460) | 83172..85130 | + | 1959 | WP_187983845.1 | ATP-binding protein | - |
| PQQ29_RS00465 (PQQ29_00465) | 85131..86207 | + | 1077 | WP_077316128.1 | M23 family metallopeptidase | - |
| PQQ29_RS00470 (PQQ29_00470) | 86226..86828 | + | 603 | WP_068995944.1 | hypothetical protein | - |
| PQQ29_RS00475 (PQQ29_00475) | 86828..87613 | + | 786 | WP_077316127.1 | hypothetical protein | - |
| PQQ29_RS00480 (PQQ29_00480) | 87631..89073 | + | 1443 | WP_187983844.1 | PcfJ domain-containing protein | - |
| PQQ29_RS00485 (PQQ29_00485) | 89246..89551 | + | 306 | WP_077316125.1 | hypothetical protein | - |
| PQQ29_RS00490 (PQQ29_00490) | 89520..89927 | + | 408 | WP_068995940.1 | hypothetical protein | - |
| PQQ29_RS00495 (PQQ29_00495) | 89945..91291 | + | 1347 | WP_077316124.1 | hypothetical protein | Relaxase |
| PQQ29_RS00500 (PQQ29_00500) | 91293..91760 | + | 468 | WP_077316123.1 | CPBP family intramembrane metalloprotease | - |
| PQQ29_RS00505 (PQQ29_00505) | 91787..92152 | + | 366 | WP_070232219.1 | hypothetical protein | - |
| PQQ29_RS00510 (PQQ29_00510) | 92174..94315 | + | 2142 | WP_077316122.1 | type IA DNA topoisomerase | - |
| PQQ29_RS00515 (PQQ29_00515) | 94367..94567 | + | 201 | WP_068995935.1 | hypothetical protein | - |
| PQQ29_RS00520 (PQQ29_00520) | 94587..95669 | + | 1083 | WP_077316121.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| PQQ29_RS00525 (PQQ29_00525) | 95761..97239 | + | 1479 | WP_077316120.1 | toprim domain-containing protein | - |
| PQQ29_RS00530 (PQQ29_00530) | 97496..97768 | + | 273 | WP_068995931.1 | hypothetical protein | - |
| PQQ29_RS00535 (PQQ29_00535) | 98011..98358 | + | 348 | Protein_106 | hypothetical protein | VF |
| PQQ29_RS00540 (PQQ29_00540) | 98402..98815 | + | 414 | WP_077316119.1 | hypothetical protein | - |
| PQQ29_RS00545 (PQQ29_00545) | 98912..99184 | + | 273 | WP_077316118.1 | hypothetical protein | - |
| PQQ29_RS00550 (PQQ29_00550) | 99433..100038 | + | 606 | WP_068995980.1 | Tyrosine recombinase XerD | VF |
| PQQ29_RS00555 (PQQ29_00555) | 100179..100568 | + | 390 | WP_068995979.1 | hypothetical protein | - |
| PQQ29_RS00560 (PQQ29_00560) | 100693..100953 | + | 261 | WP_226319491.1 | YolD-like family protein | - |
| PQQ29_RS00565 (PQQ29_00565) | 100959..101306 | + | 348 | WP_068995978.1 | hypothetical protein | - |
| PQQ29_RS00570 (PQQ29_00570) | 101294..102574 | + | 1281 | WP_068995977.1 | Y-family DNA polymerase | - |
| PQQ29_RS00575 (PQQ29_00575) | 102625..102921 | - | 297 | WP_068995976.1 | replication and copy control-associated protein | - |
| PQQ29_RS00580 (PQQ29_00580) | 102899..103873 | - | 975 | WP_003728501.1 | ParA superfamily DNA segregation protein PrgP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|