MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 122030 bp
Accession: NZ_CP117009 Location: 1..122030 Organism: Escherichia coli strain MLI110 Replicon: plasmid p122_MLI110
Accession: NZ_CP117009 Location: 1..122030 Organism: Escherichia coli strain MLI110 Replicon: plasmid p122_MLI110
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL413_RS00005 (NL413_000005) | 1..1011 | + | 1011 | WP_000200069.1 | RepB family plasmid replication initiator protein | - |
| NL413_RS00010 (NL413_000010) | 1823..2146 | - | 324 | Protein_1 | lipocalin family protein | - |
| NL413_RS00015 (NL413_000015) | 2264..2989 | + | 726 | WP_000331736.1 | IS607 family transposase ISAfe11 | Transposase |
| NL413_RS00020 (NL413_000020) | 3089..3499 | + | 411 | WP_000750473.1 | hydroxyisourate hydrolase | - |
| NL413_RS00025 (NL413_000025) | 3602..4561 | + | 960 | WP_000208728.1 | DUF523 and DUF1722 domain-containing protein | - |
| NL413_RS00030 (NL413_000030) | 4707..5795 | + | 1089 | WP_000633445.1 | AAA family ATPase | - |
| NL413_RS00035 (NL413_000035) | 5858..6562 | - | 705 | WP_001067852.1 | IS6 family transposase IS26 | Transposase |
| NL413_RS00040 (NL413_000040) | 6553..7041 | + | 489 | WP_072075272.1 | replication initiation protein | - |
| NL413_RS00045 (NL413_000045) | 8999..9457 | - | 459 | WP_223571363.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| NL413_RS00050 (NL413_000050) | 9463..10167 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NL413_RS00055 (NL413_000055) | 10414..10887 | - | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| NL413_RS00060 (NL413_000060) | 11040..12053 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| NL413_RS00065 (NL413_000065) | 12446..12628 | + | 183 | WP_103756811.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| NL413_RS00070 (NL413_000070) | 12675..13379 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NL413_RS00075 (NL413_000075) | 13431..15197 | + | 1767 | Protein_14 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| NL413_RS00080 (NL413_000080) | 15276..16280 | + | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| NL413_RS00085 (NL413_000085) | 16552..16638 | - | 87 | Protein_16 | Arm DNA-binding domain-containing protein | - |
| NL413_RS00090 (NL413_000090) | 16968..17783 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| NL413_RS00095 (NL413_000095) | 17844..18647 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| NL413_RS00100 (NL413_000100) | 18647..19483 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| NL413_RS00105 (NL413_000105) | 19590..19994 | - | 405 | Protein_20 | IS91 family transposase ISPps1 | Transposase |
| NL413_RS00110 (NL413_000110) | 20443..20685 | + | 243 | WP_024203663.1 | hypothetical protein | - |
| NL413_RS00115 (NL413_000115) | 20717..21367 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| NL413_RS00120 (NL413_000120) | 21473..22672 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| NL413_RS00125 (NL413_000125) | 22704..23357 | - | 654 | Protein_24 | EamA family transporter | - |
| NL413_RS00130 (NL413_000130) | 23980..24840 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| NL413_RS00135 (NL413_000135) | 25023..25580 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| NL413_RS00140 (NL413_000140) | 25744..25962 | + | 219 | WP_001143771.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| NL413_RS00145 (NL413_000145) | 26144..27405 | + | 1262 | Protein_28 | IS1380 family transposase ISEcp1 | Transposase |
| NL413_RS00150 (NL413_000150) | 27661..28536 | + | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| NL413_RS00155 (NL413_000155) | 28583..28915 | - | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| NL413_RS00160 (NL413_000160) | 28941..31724 | + | 2784 | Protein_31 | Tn3 family transposase TnpA_Tn3 | Transposase |
| NL413_RS00165 (NL413_000165) | 31767..32782 | - | 1016 | Protein_32 | IS3 family transposase ISEc36 | Transposase |
| NL413_RS00170 (NL413_000170) | 33177..33833 | + | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| NL413_RS00175 (NL413_000175) | 34152..34580 | - | 429 | Protein_34 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| NL413_RS00180 (NL413_000180) | 34613..36004 | - | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| NL413_RS00185 (NL413_000185) | 36041..36613 | - | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| NL413_RS00190 (NL413_000190) | 36750..37295 | - | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| NL413_RS00195 (NL413_000195) | 37430..37591 | - | 162 | Protein_38 | type II toxin-antitoxin system mRNA interferase RelE | - |
| NL413_RS00200 (NL413_000200) | 37591..37830 | - | 240 | WP_000534857.1 | type II toxin-antitoxin system antitoxin RelB | - |
| NL413_RS00205 (NL413_000205) | 37855..37965 | + | 111 | Protein_40 | protein YdfV | - |
| NL413_RS00210 (NL413_000210) | 38172..38321 | + | 150 | WP_000550473.1 | hypothetical protein | - |
| NL413_RS00215 (NL413_000215) | 38365..39438 | + | 1074 | WP_000557466.1 | hypothetical protein | - |
| NL413_RS00220 (NL413_000220) | 39702..40406 | + | 705 | WP_001067852.1 | IS6 family transposase IS26 | Transposase |
| NL413_RS00225 (NL413_000225) | 40461..42011 | + | 1551 | Protein_44 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NL413_RS00230 (NL413_000230) | 42045..42352 | - | 308 | Protein_45 | IS1-like element transposase | - |
| NL413_RS00235 (NL413_000235) | 42468..46061 | - | 3594 | WP_053921595.1 | acid-sensing system histidine kinase EvgS | - |
| NL413_RS00240 (NL413_000240) | 46066..46680 | - | 615 | WP_032214276.1 | acid-sensing system DNA-binding response regulator EvgA | - |
| NL413_RS00245 (NL413_000245) | 47054..47751 | + | 698 | WP_226453243.1 | IS1 family transposase IS1X2 | Transposase |
| NL413_RS00250 (NL413_000250) | 47894..48043 | + | 150 | Protein_49 | IS3 family transposase | - |
| NL413_RS00255 (NL413_000255) | 48070..48174 | + | 105 | Protein_50 | IS3 family transposase | - |
| NL413_RS00260 (NL413_000260) | 48478..48771 | + | 294 | WP_226438991.1 | biofilm development regulator YmgB/AriR family protein | - |
| NL413_RS00270 (NL413_000270) | 49918..50139 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| NL413_RS00275 (NL413_000275) | 50139..50519 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| NL413_RS00280 (NL413_000280) | 50524..50703 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| NL413_RS00285 (NL413_000285) | 50731..51009 | + | 279 | Protein_56 | pdcB | - |
| NL413_RS00290 (NL413_000290) | 51014..51427 | + | 414 | Protein_57 | IS3 family transposase ISLad1 | Transposase |
| NL413_RS00295 (NL413_000295) | 51377..51712 | - | 336 | WP_169329198.1 | type I deoxyribonuclease HsdR | - |
| NL413_RS00300 (NL413_000300) | 51922..52902 | - | 981 | WP_000019402.1 | IS5 family transposase IS5D | Transposase |
| NL413_RS00305 (NL413_000305) | 53146..54549 | + | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| NL413_RS00310 (NL413_000310) | 54536..55468 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| NL413_RS00315 (NL413_000315) | 55577..56623 | - | 1047 | WP_000192349.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| NL413_RS00320 (NL413_000320) | 56635..56982 | - | 348 | Protein_63 | ABC transporter permease subunit | - |
| NL413_RS00330 (NL413_000330) | 57776..58132 | + | 357 | WP_225568154.1 | abortive infection family protein | - |
| NL413_RS00335 (NL413_000335) | 58291..59263 | - | 973 | Protein_66 | hypothetical protein | - |
| NL413_RS00340 (NL413_000340) | 60020..60997 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| NL413_RS00345 (NL413_000345) | 61276..62016 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| NL413_RS00350 (NL413_000350) | 62137..62259 | - | 123 | Protein_69 | serine/threonine protein kinase | - |
| NL413_RS00355 (NL413_000355) | 62925..63929 | - | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| NL413_RS00360 (NL413_000360) | 64029..64315 | - | 287 | Protein_71 | Tn3 family transposase | - |
| NL413_RS00365 (NL413_000365) | 64369..64566 | - | 198 | WP_024262939.1 | alpha/beta hydrolase | - |
| NL413_RS00370 (NL413_000370) | 64644..65618 | + | 975 | WP_072164305.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| NL413_RS00375 (NL413_000375) | 65804..66577 | - | 774 | WP_001091225.1 | SDR family oxidoreductase | - |
| NL413_RS00380 (NL413_000380) | 66643..67344 | - | 702 | WP_001194072.1 | DsbA family oxidoreductase | - |
| NL413_RS00385 (NL413_000385) | 67410..68516 | - | 1107 | WP_006687059.1 | alkene reductase | - |
| NL413_RS00390 (NL413_000390) | 68730..68975 | + | 246 | WP_225568153.1 | thioredoxin family protein | - |
| NL413_RS00395 (NL413_000395) | 69090..69428 | - | 339 | WP_000888080.1 | carboxymuconolactone decarboxylase family protein | - |
| NL413_RS00400 (NL413_000400) | 69433..70014 | - | 582 | WP_000210408.1 | HTH-type transcriptional repressor NemR | VF |
| NL413_RS00405 (NL413_000405) | 70156..70713 | - | 558 | WP_053921594.1 | OsmC family protein | - |
| NL413_RS00410 (NL413_000410) | 70904..71098 | - | 195 | Protein_81 | helix-turn-helix domain-containing protein | - |
| NL413_RS00415 (NL413_000415) | 71365..72369 | - | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| NL413_RS00420 (NL413_000420) | 72568..73395 | - | 828 | WP_053921598.1 | universal stress protein | - |
| NL413_RS00425 (NL413_000425) | 73414..74892 | - | 1479 | WP_000927305.1 | SulP family inorganic anion transporter | - |
| NL413_RS00430 (NL413_000430) | 75281..75865 | - | 585 | WP_053921599.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| NL413_RS00435 (NL413_000435) | 76025..76384 | + | 360 | Protein_86 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| NL413_RS00440 (NL413_000440) | 76436..77133 | + | 698 | WP_226458177.1 | IS1 family transposase IS1G | Transposase |
| NL413_RS00445 (NL413_000445) | 77157..78434 | - | 1278 | WP_053921605.1 | DUF2254 domain-containing protein | - |
| NL413_RS00450 (NL413_000450) | 78497..80494 | - | 1998 | WP_032213821.1 | choline BCCT transporter BetT | - |
| NL413_RS00455 (NL413_000455) | 80646..81138 | - | 493 | Protein_90 | IS1 family transposase IS1X2 | Transposase |
| NL413_RS00460 (NL413_000460) | 81230..82807 | - | 1578 | WP_001323889.1 | Aerotaxis receptor | VF |
| NL413_RS00465 (NL413_000465) | 83117..83677 | + | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| NL413_RS00470 (NL413_000470) | 83681..86647 | + | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NL413_RS00475 (NL413_000475) | 86993..87970 | - | 978 | WP_000600827.1 | IS91 family transposase ISWz1 | Transposase |
| NL413_RS00480 (NL413_000480) | 88162..88519 | + | 358 | Protein_95 | IS1 family transposase IS1X4 | Transposase |
| NL413_RS00485 (NL413_000485) | 89378..91096 | - | 1719 | WP_000739198.1 | hybrid sensor histidine kinase/response regulator | - |
| NL413_RS00490 (NL413_000490) | 91093..91581 | - | 489 | WP_000238872.1 | molybdopterin-dependent oxidoreductase | - |
| NL413_RS00495 (NL413_000495) | 91574..92557 | - | 984 | WP_032201035.1 | hypothetical protein | - |
| NL413_RS00500 (NL413_000500) | 92561..93466 | - | 906 | WP_011264037.1 | helix-turn-helix domain-containing protein | - |
| NL413_RS00505 (NL413_000505) | 93789..94097 | + | 309 | WP_000062770.1 | hypothetical protein | - |
| NL413_RS00510 (NL413_000510) | 94090..94305 | + | 216 | WP_001112907.1 | hypothetical protein | - |
| NL413_RS00515 (NL413_000515) | 94308..94970 | + | 663 | WP_000958205.1 | hypothetical protein | VF |
| NL413_RS00520 (NL413_000520) | 94981..95280 | + | 300 | WP_000175462.1 | TrbC/VirB2 family protein | - |
| NL413_RS00525 (NL413_000525) | 95290..98040 | + | 2751 | WP_032201036.1 | Type IV secretion system protein virB4 | VF |
| NL413_RS00530 (NL413_000530) | 98059..98775 | + | 717 | WP_000770034.1 | type IV secretion system protein | - |
| NL413_RS00535 (NL413_000535) | 98787..99071 | + | 285 | WP_000769859.1 | EexN family lipoprotein | - |
| NL413_RS00540 (NL413_000540) | 99089..100096 | + | 1008 | WP_032201037.1 | type IV secretion system protein | - |
| NL413_RS00545 (NL413_000545) | 100173..100313 | + | 141 | WP_000873539.1 | hypothetical protein | - |
| NL413_RS00550 (NL413_000550) | 100306..100992 | + | 687 | WP_001293055.1 | type IV secretion system protein | - |
| NL413_RS00555 (NL413_000555) | 100985..101878 | + | 894 | WP_001045307.1 | P-type conjugative transfer protein VirB9 | - |
| NL413_RS00560 (NL413_000560) | 101875..103071 | + | 1197 | WP_000980841.1 | hypothetical protein | VF |
| NL413_RS00565 (NL413_000565) | 103075..104124 | + | 1050 | WP_000342114.1 | Type IV secretion system protein VirB11 | VF |
| NL413_RS00570 (NL413_000570) | 104111..104512 | + | 402 | WP_000979494.1 | cag pathogenicity island Cag12 family protein | - |
| NL413_RS00575 (NL413_000575) | 104603..104920 | + | 318 | WP_000683352.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| NL413_RS00580 (NL413_000580) | 104947..105282 | + | 336 | WP_000610141.1 | hypothetical protein | - |
| NL413_RS00585 (NL413_000585) | 105258..105566 | + | 309 | WP_000212005.1 | hypothetical protein | - |
| NL413_RS00590 (NL413_000590) | 105563..107764 | + | 2202 | WP_001241818.1 | type IA DNA topoisomerase | - |
| NL413_RS00595 (NL413_000595) | 107761..108153 | + | 393 | WP_001079960.1 | H-NS family nucleoid-associated regulatory protein | - |
| NL413_RS00600 (NL413_000600) | 108862..110769 | + | 1908 | WP_000575554.1 | type IV secretion system DNA-binding domain-containing protein | - |
| NL413_RS00605 (NL413_000605) | 110784..111530 | + | 747 | WP_000909125.1 | MobC family replication-relaxation protein | - |
| NL413_RS00610 (NL413_000610) | 111523..112050 | + | 528 | WP_001232861.1 | Cardiolipin synthase B | VF |
| NL413_RS00615 (NL413_000615) | 112082..112513 | - | 432 | WP_001531161.1 | hypothetical protein | - |
| NL413_RS00620 (NL413_000620) | 112645..112821 | - | 177 | WP_013438824.1 | hypothetical protein | - |
| NL413_RS00625 (NL413_000625) | 112993..113958 | - | 966 | WP_001743098.1 | zincin-like metallopeptidase domain-containing protein | - |
| NL413_RS00630 (NL413_000630) | 114413..115633 | - | 1221 | Protein_125 | ISL3 family transposase ISKox3 | Transposase |
| NL413_RS00635 (NL413_000635) | 115734..116159 | + | 426 | WP_000668788.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NL413_RS00640 (NL413_000640) | 116159..117430 | + | 1272 | WP_000457544.1 | Y-family DNA polymerase | - |
| NL413_RS00645 (NL413_000645) | 117509..117760 | + | 252 | WP_000181753.1 | hypothetical protein | - |
| NL413_RS00650 (NL413_000650) | 117814..118119 | + | 306 | WP_000534920.1 | hypothetical protein | - |
| NL413_RS00655 (NL413_000655) | 119153..120124 | - | 972 | WP_000817037.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| NL413_RS00660 (NL413_000660) | 120124..121290 | - | 1167 | WP_000523812.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|