MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 92487 bp
Accession: NZ_CP116989 Location: 1..92487 Organism: Escherichia coli strain MLI108K1 Replicon: plasmid p92_MLI108-1
Accession: NZ_CP116989 Location: 1..92487 Organism: Escherichia coli strain MLI108K1 Replicon: plasmid p92_MLI108-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL409_RS01050 (NL409_001050) | 641..1459 | - | 819 | Protein_1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| NL409_RS01055 (NL409_001055) | 1539..2159 | - | 621 | WP_044862276.1 | hypothetical protein | - |
| NL409_RS01060 (NL409_001060) | 2203..3108 | - | 906 | WP_080028513.1 | recombination-associated protein RdgC | - |
| NL409_RS01065 (NL409_001065) | 3168..3821 | - | 654 | WP_197347754.1 | baseplate protein | - |
| NL409_RS01070 (NL409_001070) | 3818..4798 | - | 981 | WP_000046500.1 | hypothetical protein | - |
| NL409_RS01075 (NL409_001075) | 4802..5569 | - | 768 | WP_197347753.1 | baseplate | - |
| NL409_RS01080 (NL409_001080) | 5566..6357 | - | 792 | WP_197347752.1 | phage tail protein | - |
| NL409_RS01085 (NL409_001085) | 6520..6822 | + | 303 | WP_000162415.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NL409_RS01090 (NL409_001090) | 6894..7232 | + | 339 | WP_032220986.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| NL409_RS01095 (NL409_001095) | 7289..7474 | + | 186 | Protein_10 | hypothetical protein | - |
| NL409_RS01100 (NL409_001100) | 7511..8239 | + | 729 | WP_197347751.1 | hypothetical protein | - |
| NL409_RS01105 (NL409_001105) | 8273..9466 | - | 1194 | WP_097433648.1 | phage tail protein | - |
| NL409_RS01110 (NL409_001110) | 9459..9788 | - | 330 | WP_000542383.1 | hypothetical protein | - |
| NL409_RS01115 (NL409_001115) | 10117..10770 | - | 654 | WP_001557715.1 | hypothetical protein | - |
| NL409_RS01120 (NL409_001120) | 11039..11662 | + | 624 | WP_202117614.1 | hypothetical protein | - |
| NL409_RS01125 (NL409_001125) | 11683..12075 | + | 393 | WP_000824759.1 | hypothetical protein | - |
| NL409_RS01130 (NL409_001130) | 12072..12383 | - | 312 | WP_000717724.1 | hypothetical protein | - |
| NL409_RS01135 (NL409_001135) | 12674..13384 | - | 711 | Protein_18 | Rha family transcriptional regulator | - |
| NL409_RS01140 (NL409_001140) | 13384..13599 | - | 216 | WP_245112217.1 | host cell division inhibitor Icd-like protein | - |
| NL409_RS01145 (NL409_001145) | 13618..13737 | - | 120 | WP_001396852.1 | ash family protein | - |
| NL409_RS01150 (NL409_001150) | 13912..14079 | - | 168 | WP_000218500.1 | hypothetical protein | - |
| NL409_RS01155 (NL409_001155) | 14411..14989 | - | 579 | WP_236263681.1 | Ref family recombination enhancement nuclease | - |
| NL409_RS01160 (NL409_001160) | 15107..15262 | + | 156 | WP_157775912.1 | hypothetical protein | - |
| NL409_RS01165 (NL409_001165) | 15277..15885 | + | 609 | WP_001344858.1 | DUF4406 domain-containing protein | - |
| NL409_RS01170 (NL409_001170) | 15915..16199 | + | 285 | WP_245112216.1 | DNA-binding protein | - |
| NL409_RS01175 (NL409_001175) | 16189..16647 | + | 459 | WP_245112260.1 | hypothetical protein | - |
| NL409_RS01180 (NL409_001180) | 16644..16919 | + | 276 | WP_073714438.1 | DUF4752 family protein | - |
| NL409_RS01185 (NL409_001185) | 16916..17140 | + | 225 | WP_048256676.1 | hypothetical protein | - |
| NL409_RS01190 (NL409_001190) | 17137..17448 | + | 312 | WP_016262402.1 | hypothetical protein | - |
| NL409_RS01195 (NL409_001195) | 17445..18137 | + | 693 | WP_245112258.1 | metallophosphoesterase | - |
| NL409_RS01200 (NL409_001200) | 18277..19230 | + | 954 | WP_247193451.1 | DUF968 domain-containing protein | - |
| NL409_RS01205 (NL409_001205) | 19247..19939 | + | 693 | WP_219394458.1 | hypothetical protein | - |
| NL409_RS01210 (NL409_001210) | 19932..20198 | + | 267 | WP_247193450.1 | hypothetical protein | - |
| NL409_RS01215 (NL409_001215) | 20185..20802 | + | 618 | WP_247193449.1 | ead/Ea22-like family protein | - |
| NL409_RS01220 (NL409_001220) | 20807..21808 | + | 1002 | WP_247193448.1 | hypothetical protein | - |
| NL409_RS01225 (NL409_001225) | 21792..22076 | + | 285 | WP_001142396.1 | hypothetical protein | - |
| NL409_RS01230 (NL409_001230) | 22061..22411 | - | 351 | WP_001436207.1 | hypothetical protein | - |
| NL409_RS01235 (NL409_001235) | 22444..22695 | + | 252 | WP_001283837.1 | DNA polymerase III subunit theta | - |
| NL409_RS01240 (NL409_001240) | 22819..23208 | + | 390 | WP_000506731.1 | S24 family peptidase | - |
| NL409_RS01245 (NL409_001245) | 23281..23502 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| NL409_RS01250 (NL409_001250) | 23502..23882 | + | 381 | WP_001216041.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| NL409_RS01255 (NL409_001255) | 23966..24766 | - | 801 | WP_000432093.1 | hypothetical protein | - |
| NL409_RS01260 (NL409_001260) | 24773..25450 | - | 678 | WP_001061874.1 | DUF2829 domain-containing protein | - |
| NL409_RS01265 (NL409_001265) | 25465..25959 | - | 495 | WP_000640907.1 | dUTP diphosphatase | - |
| NL409_RS01270 (NL409_001270) | 25956..26432 | - | 477 | WP_000861175.1 | hypothetical protein | - |
| NL409_RS01275 (NL409_001275) | 26429..26773 | - | 345 | WP_001191776.1 | hypothetical protein | - |
| NL409_RS01280 (NL409_001280) | 26847..27875 | - | 1029 | WP_001292230.1 | tyrosine-type recombinase/integrase | - |
| NL409_RS01285 (NL409_001285) | 28261..29298 | + | 1038 | WP_047647013.1 | hypothetical protein | - |
| NL409_RS01290 (NL409_001290) | 29324..30832 | - | 1509 | WP_245112239.1 | terminase | - |
| NL409_RS01295 (NL409_001295) | 30832..32196 | - | 1365 | WP_245112234.1 | DNA pacase A subunit | - |
| NL409_RS01300 (NL409_001300) | 32193..32585 | - | 393 | WP_032342027.1 | hypothetical protein | - |
| NL409_RS01305 (NL409_001305) | 32694..33086 | - | 393 | WP_170929449.1 | hypothetical protein | - |
| NL409_RS01310 (NL409_001310) | 33086..33661 | - | 576 | WP_171763672.1 | hypothetical protein | - |
| NL409_RS01320 (NL409_001320) | 34200..34331 | - | 132 | WP_255065839.1 | hypothetical protein | - |
| NL409_RS01340 (NL409_001340) | 36549..37757 | - | 1209 | WP_052896590.1 | hypothetical protein | - |
| NL409_RS01345 | 37872..38171 | - | 300 | WP_032342286.1 | hypothetical protein | - |
| NL409_RS01350 | 38168..38353 | - | 186 | WP_225103394.1 | hypothetical protein | - |
| NL409_RS01355 (NL409_001345) | 38383..38691 | - | 309 | WP_001350898.1 | VRR-NUC domain-containing protein | - |
| NL409_RS01360 (NL409_001350) | 39013..39273 | - | 261 | WP_047647006.1 | hypothetical protein | - |
| NL409_RS01365 (NL409_001355) | 39276..39710 | - | 435 | WP_047647004.1 | hypothetical protein | - |
| NL409_RS01370 (NL409_001360) | 39747..46586 | - | 6840 | WP_112054433.1 | SNF2-related protein | - |
| NL409_RS01375 (NL409_001365) | 46681..47025 | - | 345 | WP_245112226.1 | hypothetical protein | - |
| NL409_RS01380 (NL409_001370) | 47260..47745 | + | 486 | WP_085452313.1 | TIGR02594 family protein | - |
| NL409_RS01385 (NL409_001375) | 47778..47975 | - | 198 | WP_097747480.1 | hypothetical protein | - |
| NL409_RS01390 (NL409_001380) | 47975..48682 | - | 708 | WP_171961823.1 | Rha family transcriptional regulator | - |
| NL409_RS01395 (NL409_001385) | 48682..48906 | - | 225 | WP_001436278.1 | host cell division inhibitor Icd-like protein | - |
| NL409_RS01400 (NL409_001390) | 49321..50283 | - | 963 | WP_063074529.1 | hypothetical protein | - |
| NL409_RS01405 (NL409_001395) | 50484..51482 | - | 999 | WP_032342280.1 | hypothetical protein | - |
| NL409_RS01410 (NL409_001400) | 51496..53139 | - | 1644 | WP_223363312.1 | portal protein | - |
| NL409_RS01415 (NL409_001405) | 53243..54628 | - | 1386 | WP_171961824.1 | hypothetical protein | - |
| NL409_RS01420 (NL409_001410) | 54722..55090 | - | 369 | WP_052896581.1 | hypothetical protein | - |
| NL409_RS01425 (NL409_001415) | 55090..57033 | - | 1944 | WP_159195152.1 | head protein | - |
| NL409_RS01430 (NL409_001420) | 57030..57647 | - | 618 | WP_141106238.1 | hypothetical protein | - |
| NL409_RS01435 (NL409_001425) | 57637..58086 | - | 450 | WP_064198760.1 | hypothetical protein | - |
| NL409_RS01440 (NL409_001430) | 58079..58402 | - | 324 | WP_052896575.1 | holin | - |
| NL409_RS01445 (NL409_001435) | 58511..58687 | + | 177 | Protein_76 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| NL409_RS01450 (NL409_001440) | 58689..58979 | + | 291 | Protein_77 | tail fiber assembly protein | - |
| NL409_RS01455 (NL409_001445) | 58951..59553 | - | 603 | WP_141106240.1 | tail fiber assembly protein | - |
| NL409_RS01460 (NL409_001450) | 59553..60491 | - | 939 | WP_171961825.1 | tail fiber protein | - |
| NL409_RS01465 (NL409_001455) | 60491..60979 | - | 489 | Protein_80 | DUF2612 domain-containing protein | - |
| NL409_RS01470 (NL409_001460) | 60971..61240 | + | 270 | Protein_81 | tyrosine-type recombinase/integrase | - |
| NL409_RS01475 (NL409_001465) | 61328..61744 | - | 417 | WP_086353615.1 | tail fiber assembly protein | - |
| NL409_RS01480 (NL409_001470) | 61747..63765 | - | 2019 | WP_272789938.1 | hypothetical protein | - |
| NL409_RS01485 (NL409_001475) | 63784..63981 | - | 198 | Protein_84 | phage tail protein | - |
| NL409_RS01490 (NL409_001480) | 66090..66536 | - | 447 | WP_032220795.1 | hypothetical protein | - |
| NL409_RS01495 (NL409_001485) | 66631..67476 | - | 846 | WP_171961826.1 | phage tail protein | - |
| NL409_RS01500 (NL409_001490) | 67487..68917 | - | 1431 | WP_063074755.1 | hypothetical protein | - |
| NL409_RS01505 (NL409_001495) | 68914..69288 | - | 375 | WP_032220997.1 | hypothetical protein | - |
| NL409_RS01510 (NL409_001500) | 69294..74324 | - | 5031 | WP_272789902.1 | transglycosylase | - |
| NL409_RS01515 (NL409_001505) | 74379..75200 | - | 822 | WP_063074821.1 | hypothetical protein | - |
| NL409_RS01520 (NL409_001510) | 75589..76344 | + | 756 | WP_001077897.1 | RepB family plasmid replication initiator protein | - |
| NL409_RS01525 (NL409_001515) | 76663..77871 | - | 1209 | WP_220408440.1 | IS200-IS605 family transposase IS609 | Transposase |
| NL409_RS01530 (NL409_001520) | 77894..78310 | + | 417 | WP_197347836.1 | IS200-IS605 family transposase IS609 | Transposase |
| NL409_RS01535 (NL409_001525) | 78475..79182 | - | 708 | WP_197347837.1 | phage tail protein | - |
| NL409_RS01540 (NL409_001530) | 79198..79749 | - | 552 | WP_032220996.1 | hypothetical protein | - |
| NL409_RS01545 (NL409_001535) | 79802..80293 | - | 492 | WP_000012428.1 | hypothetical protein | - |
| NL409_RS01550 (NL409_001540) | 80302..80850 | - | 549 | WP_000870304.1 | hypothetical protein | - |
| NL409_RS01555 (NL409_001545) | 80942..81676 | - | 735 | WP_000801019.1 | hypothetical protein | - |
| NL409_RS01560 (NL409_001550) | 81720..83378 | - | 1659 | WP_197347838.1 | phage tail protein | - |
| NL409_RS01565 (NL409_001555) | 83446..83724 | - | 279 | WP_197347839.1 | Ig-like domain-containing protein | - |
| NL409_RS01570 (NL409_001560) | 83871..85568 | - | 1698 | WP_001038837.1 | hypothetical protein | - |
| NL409_RS01575 (NL409_001565) | 85727..86119 | + | 393 | WP_224173540.1 | hypothetical protein | - |
| NL409_RS01580 (NL409_001570) | 86136..86594 | + | 459 | WP_000020026.1 | hypothetical protein | - |
| NL409_RS01585 (NL409_001575) | 86748..87206 | - | 459 | WP_000243176.1 | hypothetical protein | - |
| NL409_RS01590 (NL409_001580) | 87277..88080 | - | 804 | WP_197347840.1 | hypothetical protein | - |
| NL409_RS01595 (NL409_001585) | 88080..88364 | - | 285 | WP_001272819.1 | PAAR domain-containing protein | - |
| NL409_RS01600 (NL409_001590) | 88632..89588 | + | 957 | WP_001217888.1 | plasmid segregation protein ParM | - |
| NL409_RS01605 (NL409_001595) | 89602..89940 | + | 339 | WP_000076909.1 | plasmid partitioning/stability family protein | - |
| NL409_RS01610 (NL409_001600) | 90228..90869 | + | 642 | WP_000585022.1 | AAA family ATPase | - |
| NL409_RS01615 (NL409_001605) | 90862..91149 | + | 288 | WP_000595051.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|