MGE detailed information
MGE type: Prophage MGE length: 51664 bp
Accession: NZ_CP116925 Location: 2352242..2403905 Organism: Escherichia coli strain MLI104K2 Replicon: chromosome
Accession: NZ_CP116925 Location: 2352242..2403905 Organism: Escherichia coli strain MLI104K2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL420_RS12215 (2348141) | 2348141..2349361 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| NL420_RS12220 (2349486) | 2349486..2350181 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| NL420_RS12225 (2350134) | 2350134..2351426 | - | 1293 | WP_071593517.1 | voltage-gated ClC-type chloride channel ClcB | - |
| NL420_RS12230 (2351585) | 2351585..2352199 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| NL420_RS12235 (2352242) | 2352242..2353096 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| NL420_RS12240 (2353098) | 2353098..2353715 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| NL420_RS12245 (2353726) | 2353726..2356149 | - | 2424 | Protein_2292 | dimethyl sulfoxide reductase subunit A | - |
| NL420_RS12250 (2356210) | 2356210..2358636 | - | 2427 | WP_000041681.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NL420_RS12255 (2358835) | 2358835..2359140 | - | 306 | WP_072667322.1 | DUF1161 domain-containing protein | - |
| NL420_RS12260 (2359248) | 2359248..2359958 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NL420_RS12265 (2359961) | 2359961..2360521 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NL420_RS12270 (2360556) | 2360556..2360897 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NL420_RS12275 (2361032) | 2361032..2361358 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| NL420_RS12280 (2361564) | 2361564..2362778 | + | 1215 | WP_255055551.1 | starvation-sensing protein RspA | - |
| NL420_RS12285 (2362790) | 2362790..2363809 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NL420_RS12290 (2363997) | 2363997..2365277 | - | 1281 | WP_139244249.1 | Putative defective protein IntQ ; Integrase | Integrase |
| NL420_RS12295 (2365312) | 2365312..2365563 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| NL420_RS12300 (2365636) | 2365636..2367396 | - | 1761 | Protein_2303 | 3'-5' exoribonuclease | - |
| NL420_RS12305 (2367859) | 2367859..2368197 | - | 339 | Protein_2304 | IS1 family transposase | - |
| NL420_RS12310 (2368838) | 2368838..2369259 | + | 422 | Protein_2305 | hypothetical protein | - |
| NL420_RS12315 (2369894) | 2369894..2370265 | + | 372 | WP_001406656.1 | ISNCY family transposase ISRel10 | Transposase |
| NL420_RS12320 (2370303) | 2370303..2370965 | + | 663 | Protein_2307 | ISNCY family transposase ISCARN112 | Transposase |
| NL420_RS12325 (2371086) | 2371086..2371235 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| NL420_RS12330 (2371672) | 2371672..2372004 | - | 333 | Protein_2309 | FlxA-like family protein | - |
| NL420_RS12335 (2371895) | 2371895..2372188 | - | 294 | WP_255055842.1 | hypothetical protein | - |
| NL420_RS12340 (2372267) | 2372267..2372332 | - | 66 | Protein_2311 | hypothetical protein | - |
| NL420_RS12345 (2373385) | 2373385..2373570 | - | 186 | Protein_2312 | protein YdfV | - |
| NL420_RS12350 (2373595) | 2373595..2373834 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NL420_RS12355 (2373834) | 2373834..2374121 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NL420_RS12360 (2374193) | 2374193..2374348 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NL420_RS12365 (2374565) | 2374565..2374816 | + | 252 | WP_001463433.1 | protein Rem | - |
| NL420_RS12370 (2374883) | 2374883..2375161 | + | 279 | WP_001515373.1 | hypothetical protein | - |
| NL420_RS12375 (2375163) | 2375163..2376095 | + | 933 | WP_272782097.1 | hypothetical protein | - |
| NL420_RS12380 (2376373) | 2376373..2376462 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| NL420_RS12385 (2376517) | 2376517..2376729 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NL420_RS12390 (2377030) | 2377030..2377245 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NL420_RS12395 (2377609) | 2377609..2377779 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NL420_RS12400 (2378000) | 2378000..2378215 | + | 216 | WP_001515371.1 | phage lysis protein EssD | - |
| NL420_RS12405 (2378220) | 2378220..2378534 | + | 315 | WP_001515370.1 | YdfR family protein | - |
| NL420_RS12410 (2378590) | 2378590..2379123 | + | 534 | WP_001515369.1 | lysozyme | - |
| NL420_RS12415 (2379120) | 2379120..2379617 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NL420_RS12420 (2379979) | 2379979..2380191 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NL420_RS12425 (2380202) | 2380202..2380390 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| NL420_RS12430 (2380393) | 2380393..2380458 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| NL420_RS12435 (2380537) | 2380537..2380692 | + | 156 | WP_001309517.1 | protein YnfN | - |
| NL420_RS12440 (2380864) | 2380864..2381037 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NL420_RS12445 (2381189) | 2381189..2381599 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NL420_RS12450 (2381657) | 2381657..2381890 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NL420_RS12455 (2382279) | 2382279..2382824 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| NL420_RS12460 (2382910) | 2382910..2383245 | - | 336 | WP_272782098.1 | hypothetical protein | - |
| NL420_RS12465 (2383272) | 2383272..2383607 | - | 336 | WP_272782099.1 | hypothetical protein | - |
| NL420_RS12470 (2383604) | 2383604..2395777 | - | 12174 | WP_272782125.1 | hypothetical protein | - |
| NL420_RS12475 (2396034) | 2396034..2396327 | - | 294 | WP_272782100.1 | hypothetical protein | - |
| NL420_RS12480 (2396520) | 2396520..2396780 | - | 261 | WP_272782101.1 | hypothetical protein | - |
| NL420_RS12485 (2396961) | 2396961..2397995 | - | 1035 | WP_272782103.1 | hypothetical protein | - |
| NL420_RS12490 (2398024) | 2398024..2398509 | - | 486 | WP_272782104.1 | hypothetical protein | - |
| NL420_RS12495 (2399241) | 2399241..2399537 | - | 297 | WP_272782105.1 | hypothetical protein | - |
| NL420_RS12500 (2399811) | 2399811..2400023 | + | 213 | Protein_2343 | hypothetical protein | - |
| NL420_RS12505 (2400023) | 2400023..2400598 | + | 576 | WP_072667395.1 | tail fiber assembly protein | - |
| NL420_RS12510 (2400696) | 2400696..2401286 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NL420_RS12515 (2401603) | 2401603..2401836 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NL420_RS12520 (2401905) | 2401905..2402018 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NL420_RS12525 (2402623) | 2402623..2403905 | + | 1283 | Protein_2348 | MHS family MFS transporter YdfJ | - |
| NL420_RS12530 (2403994) | 2403994..2405454 | + | 1461 | WP_255055730.1 | mannitol dehydrogenase family protein | - |
| NL420_RS12535 (2405489) | 2405489..2405692 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NL420_RS12540 (2405869) | 2405869..2406555 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NL420_RS12545 (2406644) | 2406644..2407390 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|