MGE detailed information
MGE type: Conjugative plasmid MGE length: 93511 bp
Accession: NZ_CP116924 Location: 1..93511 Organism: Escherichia coli strain MLI104K2 Replicon: plasmid p93_MLI104-2
Accession: NZ_CP116924 Location: 1..93511 Organism: Escherichia coli strain MLI104K2 Replicon: plasmid p93_MLI104-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL420_RS00010 (698) | 698..1729 | - | 1032 | WP_000907863.1 | plasmid replication initiator RepA | - |
| NL420_RS00015 (2723) | 2723..2844 | + | 122 | Protein_2 | ash family protein | - |
| NL420_RS00020 (2882) | 2882..3169 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| NL420_RS00025 (3611) | 3611..4144 | + | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| NL420_RS00030 (4397) | 4397..5080 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| NL420_RS00035 (5253) | 5253..5804 | + | 552 | WP_000744644.1 | hypothetical protein | - |
| NL420_RS00040 (5966) | 5966..6220 | + | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| NL420_RS00045 (6263) | 6263..6715 | + | 453 | WP_000008894.1 | hypothetical protein | - |
| NL420_RS00050 (7401) | 7401..8451 | + | 1051 | Protein_9 | hypothetical protein | VF |
| NL420_RS00055 (8451) | 8451..8888 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| NL420_RS00060 (8902) | 8902..10583 | + | 1682 | Protein_11 | hypothetical protein | VF |
| NL420_RS00065 (10576) | 10576..11870 | + | 1295 | Protein_12 | hypothetical protein | VF |
| NL420_RS00070 (11857) | 11857..12309 | + | 453 | WP_001247336.1 | hypothetical protein | VF |
| NL420_RS00075 (12320) | 12320..13873 | + | 1554 | WP_000362202.1 | hypothetical protein | VF |
| NL420_RS00080 (13886) | 13886..14982 | + | 1097 | Protein_15 | Toxin coregulated pilus biosynthesis protein E | VF |
| NL420_RS00085 (15000) | 15000..15614 | + | 615 | WP_000959785.1 | hypothetical protein | VF |
| NL420_RS00090 (15719) | 15719..16183 | + | 465 | WP_042004728.1 | lytic transglycosylase domain-containing protein | - |
| NL420_RS00095 (16168) | 16168..16824 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| NL420_RS00100 (16824) | 16824..17915 | + | 1092 | Protein_19 | hypothetical protein | VF |
| NL420_RS00105 (19289) | 19289..19642 | - | 354 | WP_001393368.1 | hypothetical protein | - |
| NL420_RS00110 (19641) | 19641..20794 | + | 1154 | Protein_21 | site-specific integrase | - |
| NL420_RS00115 (20945) | 20945..21769 | + | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| NL420_RS00120 (21854) | 21854..23056 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| NL420_RS00125 (23116) | 23116..23700 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| NL420_RS00130 (24095) | 24095..24553 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| NL420_RS00135 (24550) | 24550..25368 | + | 819 | WP_031942450.1 | hypothetical protein | VF |
| NL420_RS00140 (25365) | 25365..26513 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| NL420_RS00145 (26510) | 26510..26800 | + | 291 | WP_001314267.1 | hypothetical protein | - |
| NL420_RS00150 (26815) | 26815..27366 | + | 552 | WP_000014586.1 | Phospholipase D | VF |
| NL420_RS00155 (27535) | 27535..31216 | + | 3682 | Protein_30 | DUF5710 domain-containing protein | - |
| NL420_RS00160 (31234) | 31234..31581 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| NL420_RS00165 (31578) | 31578..32270 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| NL420_RS00170 (32281) | 32281..33264 | + | 984 | WP_001191879.1 | hypothetical protein | VF |
| NL420_RS00175 (33267) | 33267..34556 | + | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| NL420_RS00180 (34556) | 34556..35260 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| NL420_RS00185 (35260) | 35260..35787 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| NL420_RS00190 (35837) | 35837..36239 | + | 403 | Protein_37 | IncI1-type conjugal transfer protein TraR | - |
| NL420_RS00195 (36303) | 36303..36491 | + | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| NL420_RS00200 (36475) | 36475..37274 | + | 800 | Protein_39 | IncI1-type conjugal transfer protein TraT | - |
| NL420_RS00205 (37364) | 37364..40407 | + | 3044 | Protein_40 | IncI1-type conjugal transfer protein TraU | - |
| NL420_RS00210 (40407) | 40407..41021 | + | 615 | WP_031942449.1 | IncI1-type conjugal transfer protein TraV | - |
| NL420_RS00215 (40988) | 40988..42190 | + | 1203 | WP_031942448.1 | IncI1-type conjugal transfer protein TraW | - |
| NL420_RS00220 (42219) | 42219..42803 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| NL420_RS00225 (42900) | 42900..45067 | + | 2168 | Protein_44 | IncI1-type conjugal transfer membrane protein TraY | - |
| NL420_RS00230 (45143) | 45143..45757 | + | 615 | WP_000578648.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| NL420_RS00235 (45855) | 45855..46064 | + | 210 | WP_001140543.1 | hemolysin expression modulator Hha | - |
| NL420_RS00240 (46247) | 46247..46423 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| NL420_RS00245 (46488) | 46488..46583 | - | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| NL420_RS00250 (47084) | 47084..47335 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| NL420_RS00255 (47407) | 47407..47559 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - (47609) | 47609..47671 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (47609) | 47609..47671 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (47609) | 47609..47671 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (47609) | 47609..47671 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| NL420_RS00260 (47880) | 47880..48791 | + | 912 | WP_272781916.1 | hypothetical protein | - |
| NL420_RS00265 (49270) | 49270..50478 | + | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| NL420_RS00270 (50497) | 50497..51567 | + | 1071 | WP_031942445.1 | IncI1-type conjugal transfer protein TrbB | - |
| NL420_RS00275 (51560) | 51560..53850 | + | 2291 | Protein_54 | F-type conjugative transfer protein TrbC | - |
| NL420_RS00280 (53885) | 53885..56584 | - | 2700 | WP_031942444.1 | hypothetical protein | Relaxase |
| NL420_RS00285 (56595) | 56595..56927 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| NL420_RS00290 (57193) | 57193..57495 | + | 303 | WP_272781917.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| NL420_RS00295 (57580) | 57580..58428 | - | 849 | WP_031942443.1 | DUF4942 domain-containing protein | - |
| NL420_RS00300 (59006) | 59006..59257 | + | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| NL420_RS00305 (59288) | 59288..59494 | - | 207 | WP_000150314.1 | hypothetical protein | VF |
| NL420_RS00310 (59556) | 59556..60458 | - | 903 | WP_031942441.1 | ISNCY family transposase ISRor2 | VF |
| NL420_RS00315 (60455) | 60455..60844 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| NL420_RS00320 (61021) | 61021..61287 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| NL420_RS00325 (61380) | 61380..61814 | - | 435 | WP_031942440.1 | hypothetical protein | - |
| NL420_RS00330 (62539) | 62539..63039 | - | 501 | WP_021545156.1 | antirestriction protein ArdA | - |
| NL420_RS00335 (63501) | 63501..64156 | - | 656 | Protein_66 | hypothetical protein | - |
| NL420_RS00340 (64153) | 64153..64872 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| NL420_RS00345 (64869) | 64869..65303 | - | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| NL420_RS00350 (65356) | 65356..67314 | - | 1959 | WP_255123469.1 | ParB/RepB/Spo0J family partition protein | - |
| NL420_RS00355 (67373) | 67373..67606 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| NL420_RS00360 (67664) | 67664..68191 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| NL420_RS00365 (68575) | 68575..68823 | - | 249 | WP_001354012.1 | hypothetical protein | - |
| NL420_RS00370 (68959) | 68959..69150 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| NL420_RS00375 (69147) | 69147..69569 | - | 423 | WP_000271744.1 | DUF1380 family protein | - |
| NL420_RS00380 (69616) | 69616..70041 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| NL420_RS00385 (70453) | 70453..71223 | - | 771 | WP_031942437.1 | hypothetical protein | - |
| NL420_RS00390 (71268) | 71268..71786 | - | 519 | WP_226434818.1 | DUF1380 family protein | - |
| NL420_RS00395 (71716) | 71716..71937 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| NL420_RS00400 (71938) | 71938..72620 | - | 683 | Protein_79 | DNA methylase | - |
| NL420_RS00405 (72696) | 72696..72986 | - | 291 | WP_172688003.1 | hypothetical protein | - |
| NL420_RS00410 (73010) | 73010..73432 | - | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| NL420_RS00415 (73435) | 73435..74414 | - | 980 | Protein_82 | plasmid segregation protein ParM | - |
| NL420_RS00420 (74751) | 74751..75086 | + | 336 | WP_001340323.1 | hypothetical protein | - |
| NL420_RS00425 (75091) | 75091..75177 | - | 87 | Protein_84 | hypothetical protein | - |
| NL420_RS00430 (75181) | 75181..76082 | - | 902 | Protein_85 | DUF1281 domain-containing protein | - |
| NL420_RS00435 (76500) | 76500..76748 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| NL420_RS00440 (76745) | 76745..77182 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NL420_RS00445 (77182) | 77182..78453 | + | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| NL420_RS00450 (78649) | 78649..79275 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| NL420_RS00455 (80080) | 80080..80931 | - | 852 | Protein_90 | protein YagA | - |
| NL420_RS00460 (81078) | 81078..81938 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| NL420_RS00465 (82758) | 82758..84127 | - | 1370 | Protein_92 | IS1182-like element ISCfr1 family transposase | - |
| NL420_RS00470 (84242) | 84242..85378 | - | 1137 | WP_000080861.1 | DUF3883 domain-containing protein | - |
| NL420_RS00475 (85429) | 85429..85656 | - | 228 | WP_000248278.1 | hypothetical protein | - |
| NL420_RS00480 (85680) | 85680..85853 | + | 174 | WP_180354954.1 | hypothetical protein | - |
| NL420_RS00485 (86352) | 86352..86894 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| NL420_RS00490 (86907) | 86907..87767 | - | 861 | WP_000557454.1 | SPbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| NL420_RS00495 (87999) | 87999..88702 | + | 704 | Protein_98 | IS6 family transposase IS26 | Transposase |
| NL420_RS00500 (88754) | 88754..88903 | + | 150 | Protein_99 | cupin fold metalloprotein, WbuC family | - |
| NL420_RS00505 (88950) | 88950..89825 | - | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| NL420_RS00510 (90081) | 90081..90260 | - | 180 | Protein_101 | IS1380 family transposase | - |
| NL420_RS00515 (90325) | 90325..91029 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NL420_RS00520 (91121) | 91121..91621 | - | 501 | Protein_103 | protein YagA | - |
| NL420_RS00525 (91974) | 91974..92576 | + | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| NL420_RS00530 (92632) | 92632..93140 | + | 509 | Protein_105 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|