MGE detailed information
MGE type: Genomic_island MGE length: 33748 bp
Accession: NZ_CP116919 Location: 3996513..4030260 Organism: Escherichia coli strain MLI102 Replicon: chromosome
Accession: NZ_CP116919 Location: 3996513..4030260 Organism: Escherichia coli strain MLI102 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL418_RS20295 (3992709) | 3992709..3994201 | - | 1493 | Protein_3840 | type II secretion system ATPase GspE | - |
| NL418_RS20300 (3994201) | 3994201..3996234 | - | 2034 | WP_272773498.1 | type II secretion system secretin GspD | - |
| NL418_RS20305 (3996513) | 3996513..3997178 | - | 666 | WP_272773499.1 | hypothetical protein | VF |
| NL418_RS20310 (3997279) | 3997279..3997689 | - | 411 | WP_000890768.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| NL418_RS20315 (3997730) | 3997730..3998485 | - | 756 | Protein_3844 | A24 family peptidase | - |
| NL418_RS20320 (3998595) | 3998595..3999857 | - | 1263 | WP_272773500.1 | metallophosphoesterase | - |
| NL418_RS20325 (3999890) | 3999890..4000381 | - | 492 | WP_272773501.1 | ricin-type beta-trefoil lectin domain protein | - |
| NL418_RS20330 (4001520) | 4001520..4002500 | + | 981 | WP_000019406.1 | IS5 family transposase IS5D | Transposase |
| NL418_RS20335 (4003005) | 4003005..4003721 | - | 717 | WP_272773502.1 | D-inositol-3-phosphate glycosyltransferase | VF |
| NL418_RS20340 (4003706) | 4003706..4003876 | - | 171 | Protein_3849 | DUF3440 domain-containing protein | - |
| NL418_RS20345 (4003919) | 4003919..4004095 | - | 177 | Protein_3850 | transposase domain-containing protein | - |
| NL418_RS20350 (4004178) | 4004178..4004705 | - | 528 | WP_272773503.1 | group II intron maturase-specific domain-containing protein | - |
| NL418_RS20355 (4004720) | 4004720..4005226 | - | 507 | WP_272773504.1 | reverse transcriptase domain-containing protein | - |
| NL418_RS20360 (4005169) | 4005169..4005563 | + | 395 | Protein_3853 | hypothetical protein | - |
| NL418_RS20365 (4005841) | 4005841..4007136 | - | 1296 | Protein_3854 | IS66 family transposase ISEc8 | Transposase |
| NL418_RS20370 (4007186) | 4007186..4007533 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| NL418_RS20375 (4007530) | 4007530..4007910 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| NL418_RS20380 (4008064) | 4008064..4008306 | + | 243 | Protein_3857 | DUF3387 domain-containing protein | - |
| NL418_RS20385 (4008714) | 4008714..4009412 | - | 699 | WP_000431498.1 | lactate utilization protein C | - |
| NL418_RS20390 (4009417) | 4009417..4010831 | - | 1415 | Protein_3859 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| NL418_RS20395 (4010842) | 4010842..4011561 | - | 720 | WP_001102090.1 | (Fe-S)-binding protein | - |
| NL418_RS20400 (4011611) | 4011611..4013164 | - | 1554 | Protein_3861 | L-lactate permease | - |
| NL418_RS20405 (4013501) | 4013501..4013653 | + | 153 | Protein_3862 | peptide ABC transporter substrate-binding protein | - |
| NL418_RS20410 (4013875) | 4013875..4014572 | + | 698 | WP_236917611.1 | IS1 family transposase IS1R | Transposase |
| NL418_RS20415 (4014773) | 4014773..4015843 | - | 1071 | WP_000920172.1 | hypothetical protein | - |
| NL418_RS20420 (4015904) | 4015904..4017526 | - | 1623 | WP_272773505.1 | zinc ribbon domain-containing protein | - |
| NL418_RS20425 (4017536) | 4017536..4018516 | - | 981 | WP_272773506.1 | N-6 DNA methylase | - |
| NL418_RS20430 (4018579) | 4018579..4018725 | - | 147 | WP_272773507.1 | hypothetical protein | - |
| NL418_RS20435 (4018967) | 4018967..4020172 | - | 1206 | Protein_3868 | tyrosine-type recombinase/integrase | - |
| NL418_RS20445 (4020526) | 4020526..4021779 | - | 1254 | WP_001550659.1 | glutamate-5-semialdehyde dehydrogenase | - |
| NL418_RS20450 (4021791) | 4021791..4022894 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| NL418_RS20455 (4023182) | 4023182..4024237 | + | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| NL418_RS20460 (4024276) | 4024276..4024677 | - | 402 | WP_000174684.1 | sigma factor-binding protein Crl | - |
| - (4025395) | 4025395..4025475 | - | 81 | NuclAT_9 | - | - |
| - (4025395) | 4025395..4025475 | - | 81 | NuclAT_9 | - | - |
| - (4025395) | 4025395..4025475 | - | 81 | NuclAT_9 | - | - |
| - (4025395) | 4025395..4025475 | - | 81 | NuclAT_9 | - | - |
| NL418_RS20465 (4024735) | 4024735..4025979 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| NL418_RS20470 (4026071) | 4026071..4026529 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| NL418_RS20475 (4026790) | 4026790..4028247 | + | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| NL418_RS20480 (4028304) | 4028304..4028656 | - | 353 | Protein_3876 | peptide chain release factor H | - |
| NL418_RS20485 (4028652) | 4028652..4028858 | - | 207 | Protein_3877 | RtcB family protein | - |
| NL418_RS20490 (4029104) | 4029104..4029556 | - | 453 | WP_019842500.1 | GNAT family N-acetyltransferase | - |
| NL418_RS20495 (4029566) | 4029566..4029964 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| NL418_RS20500 (4029967) | 4029967..4030260 | - | 294 | WP_000554755.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| NL418_RS20505 (4030312) | 4030312..4031367 | - | 1056 | WP_001550655.1 | DNA polymerase IV | - |
| NL418_RS20510 (4031438) | 4031438..4032223 | - | 786 | WP_019842510.1 | putative lateral flagellar export/assembly protein LafU | - |
| NL418_RS20515 (4032195) | 4032195..4033907 | + | 1713 | Protein_3883 | flagellar biosynthesis protein FlhA | - |
| NL418_RS20520 (4034131) | 4034131..4034628 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|