MGE detailed information
MGE type: Prophage MGE length: 47295 bp
Accession: NZ_CP116900 Location: 3398556..3445850 Organism: Escherichia coli strain XH2172 Replicon: chromosome
Accession: NZ_CP116900 Location: 3398556..3445850 Organism: Escherichia coli strain XH2172 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PH219_RS16290 () | 3394974..3395945 | - | 972 | WP_000564745.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| PH219_RS16295 () | 3395942..3396685 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| PH219_RS16300 () | 3396726..3397121 | - | 396 | WP_001356287.1 | MAPEG family protein | - |
| PH219_RS16305 () | 3397174..3397521 | - | 348 | Protein_3169 | DUF72 domain-containing protein | - |
| PH219_RS16310 () | 3398556..3399080 | - | 525 | WP_000258747.1 | AP2/ERF family transcription factor | - |
| PH219_RS16315 () | 3400657..3401214 | + | 558 | WP_023147813.1 | hypothetical protein | - |
| PH219_RS16320 () | 3401215..3401493 | + | 279 | WP_001753400.1 | hypothetical protein | - |
| PH219_RS16325 () | 3401493..3401708 | + | 216 | WP_001681135.1 | hypothetical protein | - |
| PH219_RS16330 () | 3401705..3401992 | + | 288 | WP_000805963.1 | HNH endonuclease | - |
| PH219_RS16335 () | 3402148..3402471 | + | 324 | WP_001678977.1 | hypothetical protein | - |
| PH219_RS16340 () | 3403010..3403720 | + | 711 | WP_001681134.1 | hypothetical protein | - |
| PH219_RS16345 () | 3403729..3404037 | + | 309 | WP_001678975.1 | hypothetical protein | - |
| PH219_RS16350 () | 3404063..3404266 | + | 204 | WP_001678974.1 | hypothetical protein | - |
| PH219_RS16355 () | 3404425..3405453 | + | 1029 | Protein_3179 | tape measure protein | - |
| PH219_RS16360 () | 3405520..3406682 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| PH219_RS16365 () | 3406712..3407419 | + | 708 | Protein_3181 | phage tail tape measure protein | - |
| PH219_RS16375 () | 3408750..3409070 | + | 321 | Protein_3183 | phage tail tape measure protein | - |
| PH219_RS16380 () | 3409228..3410001 | + | 774 | WP_001678972.1 | hypothetical protein | - |
| PH219_RS16385 () | 3410659..3412200 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| PH219_RS16390 () | 3412215..3412961 | + | 747 | WP_053906593.1 | IS21 family transposase ISEc12 | Transposase |
| PH219_RS16395 () | 3413046..3414125 | - | 1080 | Protein_3187 | hypothetical protein ; Integrase | Integrase |
| PH219_RS16400 () | 3414196..3414672 | - | 477 | Protein_3188 | DUF72 domain-containing protein | - |
| PH219_RS16405 () | 3414669..3415235 | - | 567 | WP_000891618.1 | hydrolase | - |
| PH219_RS16410 () | 3415545..3417317 | + | 1773 | WP_001258662.1 | aspartate--tRNA ligase | - |
| PH219_RS16415 () | 3417435..3417887 | + | 453 | WP_001443602.1 | dihydroneopterin triphosphate diphosphatase | - |
| PH219_RS16420 () | 3417916..3418656 | + | 741 | WP_000907248.1 | putative transcriptional regulatory protein YebC | VF |
| PH219_RS16425 () | 3418691..3419212 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PH219_RS16430 () | 3419214..3419816 | - | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| PH219_RS16435 () | 3419887..3419952 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| PH219_RS16440 () | 3420091..3420702 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| PH219_RS16445 () | 3420711..3421721 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| PH219_RS16450 () | 3421868..3422653 | - | 786 | WP_000571479.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| PH219_RS16455 () | 3422650..3423405 | - | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| PH219_RS16460 () | 3423484..3424416 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PH219_RS16465 () | 3424432..3425754 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| PH219_RS16470 () | 3425874..3426845 | + | 972 | WP_000448381.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PH219_RS16475 () | 3426976..3428418 | - | 1443 | WP_000091176.1 | pyruvate kinase | - |
| PH219_RS16480 () | 3428546..3429415 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| PH219_RS16485 () | 3429753..3431228 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| PH219_RS16490 () | 3431463..3433274 | + | 1812 | WP_060621242.1 | phosphogluconate dehydratase | - |
| PH219_RS16495 () | 3433311..3433952 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PH219_RS16500 () | 3434008..3435186 | - | 1179 | WP_000173475.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PH219_RS16505 () | 3435320..3435610 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| PH219_RS16510 () | 3435677..3436033 | + | 357 | WP_001295500.1 | protein YebF | - |
| PH219_RS16515 () | 3436360..3437019 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| PH219_RS16520 () | 3437228..3439288 | + | 2061 | WP_000936951.1 | oligopeptidase B | - |
| PH219_RS16525 () | 3439285..3439947 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PH219_RS16530 () | 3439971..3440627 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PH219_RS16535 () | 3440729..3440959 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PH219_RS16540 () | 3441098..3441472 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PH219_RS16545 () | 3441476..3442348 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| PH219_RS16550 () | 3442361..3442702 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 3442730..3443001 | - | 272 | - | - | Antitoxin Detail |
| - | 3442860..3442963 | + | 104 | - | - | Toxin Detail |
| PH219_RS16555 () | 3443098..3443754 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| PH219_RS16560 () | 3443755..3443946 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PH219_RS16565 () | 3444051..3444287 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PH219_RS16570 () | 3444405..3445844 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PH219_RS16575 () | 3445924..3448557 | - | 2634 | WP_001356288.1 | lipid-binding membrane homeostasis protein YebT | - |
| PH219_RS16580 () | 3448526..3449809 | - | 1284 | WP_001207282.1 | membrane integrity lipid transport subunit YebS | - |
| PH219_RS16585 () | 3449939..3450436 | + | 498 | WP_001373833.1 | L-methionine (R)-S-oxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|