Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3442730..3443001 | Replicon | chromosome |
| Accession | NZ_CP116900 | ||
| Organism | Escherichia coli strain XH2172 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3442860..3442963 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3442730..3443001 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PH219_RS16525 | 3439285..3439947 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PH219_RS16530 | 3439971..3440627 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PH219_RS16535 | 3440729..3440959 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PH219_RS16540 | 3441098..3441472 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PH219_RS16545 | 3441476..3442348 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| PH219_RS16550 | 3442361..3442702 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 3442730..3443001 | - | 272 | - | - | Antitoxin |
| - | 3442860..3442963 | + | 104 | - | - | Toxin |
| PH219_RS16555 | 3443098..3443754 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| PH219_RS16560 | 3443755..3443946 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PH219_RS16565 | 3444051..3444287 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PH219_RS16570 | 3444405..3445844 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3398556..3445850 | 47294 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269322 NZ_CP116900:3442860-3442963 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269322 NZ_CP116900:c3443001-3442730 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
