MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 71941 bp
Accession: NZ_CP116736 Location: 193929..265869 Organism: Agrobacterium pusense strain CFBP5496 Replicon: chromosome
Accession: NZ_CP116736 Location: 193929..265869 Organism: Agrobacterium pusense strain CFBP5496 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFBP5496_RS16075 (CFBP5496_0016075) | 188935..189876 | + | 942 | WP_080823140.1 | sugar ABC transporter permease | - |
| CFBP5496_RS16080 (CFBP5496_0016080) | 189873..190715 | + | 843 | WP_006697289.1 | carbohydrate ABC transporter permease | - |
| CFBP5496_RS16085 (CFBP5496_0016085) | 190720..192234 | + | 1515 | WP_136883448.1 | argininosuccinate lyase | - |
| CFBP5496_RS16090 (CFBP5496_0016090) | 192234..193274 | + | 1041 | WP_006697291.1 | sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC | - |
| CFBP5496_RS16095 (CFBP5496_0016095) | 193271..194164 | + | 894 | WP_136883447.1 | sugar kinase | - |
| CFBP5496_RS16100 (CFBP5496_0016100) | 194180..195694 | - | 1515 | WP_136883446.1 | choline-sulfatase | - |
| CFBP5496_RS16105 (CFBP5496_0016105) | 195709..196662 | - | 954 | WP_136883445.1 | choline ABC transporter substrate-binding protein | - |
| CFBP5496_RS16110 (CFBP5496_0016110) | 196757..197653 | + | 897 | WP_004444701.1 | LysR family transcriptional regulator | - |
| CFBP5496_RS16115 (CFBP5496_0016115) | 197683..199134 | - | 1452 | WP_136883444.1 | aldehyde dehydrogenase | - |
| CFBP5496_RS16120 (CFBP5496_0016120) | 199151..199873 | - | 723 | WP_136883443.1 | High-affinity branched-chain amino acid transport ATP-binding protein LivF | VF |
| CFBP5496_RS16125 (CFBP5496_0016125) | 199866..200594 | - | 729 | WP_136883442.1 | ABC transporter ATP-binding protein | - |
| CFBP5496_RS16130 (CFBP5496_0016130) | 200591..201499 | - | 909 | WP_136883441.1 | branched-chain amino acid ABC transporter permease | - |
| CFBP5496_RS16135 (CFBP5496_0016135) | 201496..202368 | - | 873 | WP_112637286.1 | branched-chain amino acid ABC transporter permease | - |
| CFBP5496_RS16140 (CFBP5496_0016140) | 202438..203652 | - | 1215 | WP_136883440.1 | amino acid ABC transporter substrate-binding protein | - |
| CFBP5496_RS16145 (CFBP5496_0016145) | 203785..204657 | + | 873 | WP_136883439.1 | AraC family transcriptional regulator | - |
| CFBP5496_RS16150 (CFBP5496_0016150) | 204677..204976 | - | 300 | WP_112766393.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| CFBP5496_RS16155 (CFBP5496_0016155) | 205032..205313 | - | 282 | WP_045533913.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CFBP5496_RS16160 (CFBP5496_0016160) | 205375..206196 | - | 822 | WP_136883438.1 | putative siderophore transport system ATP-binding protein YusV | VF |
| CFBP5496_RS16165 (CFBP5496_0016165) | 206193..207227 | - | 1035 | WP_136883437.1 | Ferric enterobactin transport system permease protein FepG | VF |
| CFBP5496_RS16170 (CFBP5496_0016170) | 207230..208273 | - | 1044 | WP_136883436.1 | putative siderophore transport system permease protein YfiZ | VF |
| CFBP5496_RS16175 (CFBP5496_0016175) | 208270..209277 | - | 1008 | WP_136883435.1 | iron-siderophore ABC transporter substrate-binding protein | - |
| CFBP5496_RS16180 (CFBP5496_0016180) | 209499..211619 | + | 2121 | WP_136883434.1 | TonB-dependent siderophore receptor | - |
| CFBP5496_RS16185 (CFBP5496_0016185) | 211753..212646 | - | 894 | WP_198647610.1 | HTH-type transcriptional activator RhaR | VF |
| CFBP5496_RS16190 (CFBP5496_0016190) | 212871..213047 | + | 177 | WP_004444725.1 | hypothetical protein | - |
| CFBP5496_RS16195 (CFBP5496_0016195) | 213174..215345 | - | 2172 | WP_136883433.1 | Catalase-peroxidase | VF |
| CFBP5496_RS16200 (CFBP5496_0016200) | 215552..216460 | + | 909 | WP_136883432.1 | Hydrogen peroxide-inducible genes activator | VF |
| CFBP5496_RS16205 (CFBP5496_0016205) | 216524..217402 | - | 879 | WP_006697312.1 | DUF3313 domain-containing protein | - |
| CFBP5496_RS16210 (CFBP5496_0016210) | 217510..218844 | - | 1335 | WP_136883431.1 | HAMP domain-containing sensor histidine kinase | - |
| CFBP5496_RS16215 (CFBP5496_0016215) | 218841..219515 | - | 675 | WP_136883430.1 | Response regulator ArlR | VF |
| CFBP5496_RS16220 (CFBP5496_0016220) | 219792..220814 | + | 1023 | WP_234882094.1 | efflux RND transporter periplasmic adaptor subunit | - |
| CFBP5496_RS16225 (CFBP5496_0016225) | 220836..221974 | + | 1139 | WP_169692026.1 | IS3 family transposase ISKpn11 | Transposase |
| CFBP5496_RS16230 (CFBP5496_0016230) | 222145..222786 | + | 642 | WP_136883429.1 | hypothetical protein | - |
| CFBP5496_RS16235 (CFBP5496_0016235) | 222862..223197 | - | 336 | Protein_221 | transposase | - |
| CFBP5496_RS16240 (CFBP5496_0016240) | 223222..224430 | - | 1209 | WP_234882093.1 | IS3 family transposase IS426 | Transposase |
| CFBP5496_RS16245 (CFBP5496_0016245) | 224702..225964 | + | 1263 | WP_011982789.1 | IS110 family transposase ISMex12 | Transposase |
| CFBP5496_RS16250 (CFBP5496_0016250) | 226214..227027 | - | 814 | Protein_224 | IS3 family transposase ISRle4 | Transposase |
| CFBP5496_RS16255 (CFBP5496_0016255) | 227059..227337 | - | 279 | WP_136883428.1 | IS66 family transposase ISRel8 | Transposase |
| CFBP5496_RS16260 (CFBP5496_0016260) | 227348..227740 | - | 393 | WP_136883427.1 | transposase | - |
| CFBP5496_RS16265 (CFBP5496_0016265) | 227802..228083 | + | 282 | Protein_227 | IS3 family transposase ISRle5 | Transposase |
| CFBP5496_RS16270 (CFBP5496_0016270) | 228163..230274 | - | 2112 | WP_136883426.1 | hypothetical protein | VF |
| CFBP5496_RS16275 (CFBP5496_0016275) | 230278..231969 | - | 1692 | WP_136883425.1 | Cellobiose 2-epimerase | VF |
| CFBP5496_RS16280 (CFBP5496_0016280) | 232106..233092 | - | 987 | WP_136883424.1 | ADP-L-glycero-D-manno-heptose-6-epimerase | VF |
| CFBP5496_RS16285 (CFBP5496_0016285) | 233092..234552 | - | 1461 | WP_136883423.1 | Bifunctional protein HldE | VF |
| CFBP5496_RS16290 (CFBP5496_0016290) | 234713..235996 | - | 1284 | WP_136883422.1 | glycosyltransferase family 1 protein | - |
| CFBP5496_RS16295 (CFBP5496_0016295) | 236565..238328 | + | 1764 | WP_107341688.1 | Lipid A export ATP-binding/permease protein MsbA | VF |
| CFBP5496_RS16300 (CFBP5496_0016300) | 238664..239449 | + | 786 | WP_136883421.1 | 2-keto-4-pentenoate hydratase | - |
| CFBP5496_RS16305 (CFBP5496_0016305) | 239530..240435 | - | 906 | WP_136883420.1 | LysR family transcriptional regulator | - |
| CFBP5496_RS16310 (CFBP5496_0016310) | 240619..241674 | + | 1056 | WP_136883419.1 | aldo/keto reductase | - |
| CFBP5496_RS16315 (CFBP5496_0016315) | 241724..242674 | - | 951 | WP_136883418.1 | bile acid:sodium symporter family protein | - |
| CFBP5496_RS16320 (CFBP5496_0016320) | 242918..244582 | - | 1665 | Protein_238 | type IV secretory system conjugative DNA transfer family protein | - |
| CFBP5496_RS16325 (CFBP5496_0016325) | 244579..244887 | - | 309 | WP_136883417.1 | mobilization protein | - |
| CFBP5496_RS16330 (CFBP5496_0016330) | 245071..245997 | - | 927 | WP_136883416.1 | nucleotidyltransferase and HEPN domain-containing protein | - |
| CFBP5496_RS16335 (CFBP5496_0016335) | 246340..250129 | + | 3790 | Protein_241 | Ti-type conjugative transfer relaxase TraA | - |
| CFBP5496_RS16340 (CFBP5496_0016340) | 250304..250501 | - | 198 | WP_044459931.1 | hypothetical protein | - |
| CFBP5496_RS16350 (CFBP5496_0016350) | 250671..250967 | - | 297 | WP_136883415.1 | hypothetical protein | - |
| CFBP5496_RS16355 (CFBP5496_0016355) | 251051..251197 | - | 147 | Protein_244 | transposase | - |
| CFBP5496_RS16360 (CFBP5496_0016360) | 251285..251644 | - | 360 | WP_234882092.1 | hypothetical protein | - |
| CFBP5496_RS16365 (CFBP5496_0016365) | 251864..252021 | + | 158 | Protein_246 | IS5/IS1182 family transposase | - |
| CFBP5496_RS16370 (CFBP5496_0016370) | 253687..254517 | - | 831 | WP_136883414.1 | hypothetical protein | - |
| CFBP5496_RS16375 (CFBP5496_0016375) | 254627..255693 | + | 1067 | Protein_248 | linear amide C-N hydrolase | - |
| CFBP5496_RS16380 (CFBP5496_0016380) | 255734..256261 | - | 528 | WP_136883413.1 | dihydrofolate reductase family protein | - |
| CFBP5496_RS16385 (CFBP5496_0016385) | 256309..256878 | + | 570 | WP_136883412.1 | TetR/AcrR family transcriptional regulator | - |
| CFBP5496_RS16390 (CFBP5496_0016390) | 257050..261540 | + | 4491 | WP_136883411.1 | putative Ig domain-containing protein | - |
| CFBP5496_RS16395 (CFBP5496_0016395) | 261731..262330 | + | 600 | WP_136883410.1 | Superoxide dismutase [Fe] | VF |
| CFBP5496_RS16400 (CFBP5496_0016400) | 262434..262769 | + | 336 | WP_004438973.1 | ferredoxin family protein | - |
| CFBP5496_RS16405 (CFBP5496_0016405) | 262781..263344 | + | 564 | WP_136883409.1 | flavin reductase family protein | - |
| CFBP5496_RS16410 (CFBP5496_0016410) | 263497..264456 | - | 960 | WP_136883408.1 | hypothetical protein | - |
| CFBP5496_RS16415 (CFBP5496_0016415) | 264537..266222 | - | 1686 | WP_006697278.1 | iron ABC transporter permease | - |
| CFBP5496_RS16420 (CFBP5496_0016420) | 266219..267304 | - | 1086 | WP_136883407.1 | ABC transporter ATP-binding protein | - |
| CFBP5496_RS16425 (CFBP5496_0016425) | 267415..268407 | - | 993 | WP_136883406.1 | ABC transporter substrate-binding protein | - |
| CFBP5496_RS16430 (CFBP5496_0016430) | 268696..269829 | + | 1134 | WP_136883405.1 | ROK family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|