MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 114035 bp
Accession: NZ_CP116676 Location: 1..114035 Organism: Edwardsiella tarda strain SC002 Replicon: plasmid pEtSC002-1
Accession: NZ_CP116676 Location: 1..114035 Organism: Edwardsiella tarda strain SC002 Replicon: plasmid pEtSC002-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA77_RS17025 (PHA77_17025) | 40..801 | + | 762 | WP_279509737.1 | hypothetical protein | - |
| PHA77_RS17030 (PHA77_17030) | 823..1674 | + | 852 | Protein_2 | IS5 family transposase IS903B | Transposase |
| PHA77_RS17035 (PHA77_17035) | 1752..3371 | + | 1620 | WP_279509735.1 | ISL3 family transposase | - |
| PHA77_RS17040 (PHA77_17040) | 3517..3828 | + | 312 | WP_279509738.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PHA77_RS17045 (PHA77_17045) | 3828..4115 | + | 288 | WP_279509739.1 | helix-turn-helix transcriptional regulator | - |
| PHA77_RS17050 (PHA77_17050) | 4247..4342 | + | 96 | Protein_6 | IS66 family transposase ISEc22 | Transposase |
| PHA77_RS17055 (PHA77_17055) | 4438..5217 | + | 780 | Protein_7 | IS256 family transposase ISMaq7 | Transposase |
| PHA77_RS17060 (PHA77_17060) | 5298..6917 | + | 1620 | WP_279509740.1 | ISL3 family transposase | - |
| PHA77_RS17065 (PHA77_17065) | 7728..8633 | + | 906 | WP_279509741.1 | zincin-like metallopeptidase domain-containing protein | - |
| PHA77_RS17070 (PHA77_17070) | 9138..9611 | - | 474 | WP_279509742.1 | transglycosylase SLT domain-containing protein | - |
| PHA77_RS17075 (PHA77_17075) | 10050..10436 | + | 387 | WP_279509743.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PHA77_RS17080 (PHA77_17080) | 10537..10656 | + | 120 | Protein_12 | complement resistance protein TraT | - |
| PHA77_RS17085 (PHA77_17085) | 10649..11626 | - | 978 | WP_279509745.1 | mechanosensitive ion channel | - |
| PHA77_RS17090 (PHA77_17090) | 12226..12975 | - | 750 | WP_279509746.1 | patatin-like phospholipase family protein | - |
| PHA77_RS17095 (PHA77_17095) | 13224..15323 | - | 2100 | WP_279509747.1 | sialidase family protein | - |
| PHA77_RS17100 (PHA77_17100) | 15385..16497 | - | 1113 | WP_279509748.1 | acyltransferase | - |
| PHA77_RS17105 (PHA77_17105) | 16557..17510 | - | 954 | WP_279509749.1 | radical SAM protein | - |
| PHA77_RS17110 (PHA77_17110) | 17643..18470 | - | 828 | WP_279509750.1 | AraC family transcriptional regulator | - |
| PHA77_RS17115 (PHA77_17115) | 18879..20714 | - | 1836 | WP_279509751.1 | hypothetical protein | - |
| PHA77_RS17120 (PHA77_17120) | 20898..21602 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PHA77_RS17125 (PHA77_17125) | 21661..21978 | + | 318 | WP_279509753.1 | hypothetical protein | - |
| PHA77_RS17130 (PHA77_17130) | 22064..22774 | + | 711 | WP_279509754.1 | tyrosine-type recombinase/integrase | - |
| PHA77_RS17135 (PHA77_17135) | 22934..23470 | + | 537 | WP_279509755.1 | stationary phase growth adaptation protein | - |
| PHA77_RS17140 (PHA77_17140) | 23721..24317 | - | 597 | WP_141112572.1 | DUF2913 family protein | - |
| PHA77_RS17145 (PHA77_17145) | 24393..24560 | + | 168 | Protein_25 | recombinase family protein | - |
| PHA77_RS17150 (PHA77_17150) | 24608..25756 | - | 1149 | WP_279509756.1 | ISNCY family transposase ISBj12 | Transposase |
| PHA77_RS17155 (PHA77_17155) | 25993..26748 | - | 756 | WP_097364736.1 | IS21 family transposase ISEc10 | Transposase |
| PHA77_RS17160 (PHA77_17160) | 26745..28244 | - | 1500 | WP_279509730.1 | IS21 family transposase ISEc10 | Transposase |
| PHA77_RS17165 (PHA77_17165) | 28633..29013 | - | 381 | Protein_29 | transposase | - |
| PHA77_RS17170 (PHA77_17170) | 29326..29667 | - | 342 | WP_279509757.1 | hypothetical protein | - |
| PHA77_RS17175 (PHA77_17175) | 29660..30040 | - | 381 | WP_279509758.1 | plasmid partitioning/stability family protein | - |
| PHA77_RS17180 (PHA77_17180) | 30045..31001 | - | 957 | WP_109609982.1 | plasmid segregation protein ParM | - |
| PHA77_RS17185 (PHA77_17185) | 31163..31255 | + | 93 | Protein_33 | DUF4113 domain-containing protein | - |
| PHA77_RS17190 (PHA77_17190) | 31432..32070 | + | 639 | WP_279509759.1 | AAA family ATPase | - |
| PHA77_RS17195 (PHA77_17195) | 32070..32363 | + | 294 | WP_279509760.1 | CopG family transcriptional regulator | - |
| PHA77_RS17200 (PHA77_17200) | 32486..33286 | - | 801 | WP_279509762.1 | site-specific integrase | - |
| PHA77_RS17205 (PHA77_17205) | 33283..33906 | - | 624 | WP_279509763.1 | DUF2913 family protein | - |
| PHA77_RS17210 (PHA77_17210) | 34016..34957 | - | 942 | WP_279509764.1 | hypothetical protein | - |
| PHA77_RS17215 (PHA77_17215) | 35322..35591 | - | 270 | Protein_39 | hypothetical protein | - |
| PHA77_RS17220 (PHA77_17220) | 35548..35778 | + | 231 | WP_001261276.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PHA77_RS17225 (PHA77_17225) | 35775..36191 | + | 417 | WP_000754566.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PHA77_RS17230 (PHA77_17230) | 36272..36976 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PHA77_RS17235 (PHA77_17235) | 37028..37264 | - | 237 | Protein_43 | Tn3 family transposase TnpR_Tn3 | Transposase |
| PHA77_RS17240 (PHA77_17240) | 37428..38315 | + | 888 | Protein_44 | Tn3 family transposase ISEc63 | Transposase |
| PHA77_RS17245 (PHA77_17245) | 38369..39073 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PHA77_RS17250 (PHA77_17250) | 39137..39466 | + | 330 | Protein_46 | Tn3 family transposase TnpR_Tn3 | Transposase |
| PHA77_RS17255 (PHA77_17255) | 39649..40509 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| PHA77_RS17260 (PHA77_17260) | 40720..41988 | - | 1269 | WP_279509767.1 | ISL3 family transposase ISKpn25 | Transposase |
| PHA77_RS17265 (PHA77_17265) | 41993..45250 | - | 3258 | WP_279509768.1 | DEAD/DEAH box helicase family protein | - |
| PHA77_RS17270 (PHA77_17270) | 45251..46543 | - | 1293 | WP_279509769.1 | restriction endonuclease subunit S | - |
| PHA77_RS17275 (PHA77_17275) | 46540..48567 | - | 2028 | WP_279509770.1 | class I SAM-dependent DNA methyltransferase | - |
| PHA77_RS17280 (PHA77_17280) | 48709..50460 | - | 1752 | WP_001556710.1 | arsenite efflux transporter ATPase subunit ArsA | - |
| PHA77_RS17285 (PHA77_17285) | 50478..50840 | - | 363 | WP_000783215.1 | arsenite efflux transporter metallochaperone ArsD | - |
| PHA77_RS17290 (PHA77_17290) | 50888..51241 | - | 354 | WP_001114073.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| PHA77_RS17295 (PHA77_17295) | 51517..52359 | + | 843 | Protein_55 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| PHA77_RS17300 (PHA77_17300) | 52818..53486 | - | 669 | WP_279509771.1 | ATP-binding protein | - |
| PHA77_RS17305 (PHA77_17305) | 54024..54971 | - | 948 | WP_068872226.1 | ISNCY family transposase ISRor2 | VF |
| PHA77_RS17310 (PHA77_17310) | 55942..56877 | - | 936 | WP_279509772.1 | Replication protein | - |
| PHA77_RS17315 (PHA77_17315) | 57430..57996 | - | 567 | WP_279509713.1 | DUF2726 domain-containing protein | - |
| PHA77_RS17320 (PHA77_17320) | 58197..58817 | - | 621 | WP_279509714.1 | fertility inhibition protein FinO | - |
| PHA77_RS17325 (PHA77_17325) | 58831..59556 | - | 726 | WP_141112577.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| PHA77_RS17330 (PHA77_17330) | 59639..60805 | - | 1167 | WP_279509716.1 | Multifunctional conjugation protein TraI | Relaxase |
| PHA77_RS17335 (PHA77_17335) | 60873..61418 | + | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| PHA77_RS17340 (PHA77_17340) | 61555..62127 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| PHA77_RS17345 (PHA77_17345) | 62164..63555 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| PHA77_RS17350 (PHA77_17350) | 63588..64016 | + | 429 | Protein_66 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| PHA77_RS17355 (PHA77_17355) | 64335..64991 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| PHA77_RS17360 (PHA77_17360) | 65386..66419 | + | 1034 | Protein_68 | IS3 family transposase ISAs17 | Transposase |
| PHA77_RS17365 (PHA77_17365) | 66497..67201 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PHA77_RS17370 (PHA77_17370) | 67207..67347 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| PHA77_RS17375 (PHA77_17375) | 67833..68570 | + | 738 | WP_001446887.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PHA77_RS17380 (PHA77_17380) | 68567..68791 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| PHA77_RS17385 (PHA77_17385) | 69002..70495 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| PHA77_RS17390 (PHA77_17390) | 70526..71410 | + | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| PHA77_RS17395 (PHA77_17395) | 71627..72841 | + | 1215 | WP_023300759.1 | Bicyclomycin resistance protein | ARG |
| PHA77_RS17400 (PHA77_17400) | 72869..73174 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| PHA77_RS17405 (PHA77_17405) | 73286..73474 | + | 189 | Protein_77 | IS91 family transposase | - |
| PHA77_RS17410 (PHA77_17410) | 73441..74640 | - | 1200 | WP_000804063.1 | Tetracycline resistance protein, class C | ARG |
| PHA77_RS17415 (PHA77_17415) | 74746..75396 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| PHA77_RS17420 (PHA77_17420) | 75428..75670 | - | 243 | WP_000844627.1 | transposase | - |
| PHA77_RS17425 (PHA77_17425) | 75976..76812 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| PHA77_RS17430 (PHA77_17430) | 76812..77615 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PHA77_RS17435 (PHA77_17435) | 77676..78491 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| PHA77_RS17440 (PHA77_17440) | 78821..78907 | + | 87 | Protein_84 | Arm DNA-binding domain-containing protein | - |
| PHA77_RS17445 (PHA77_17445) | 79179..79934 | - | 756 | Protein_85 | IS110 family transposase IS5075 | Transposase |
| PHA77_RS17450 (PHA77_17450) | 79987..80691 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PHA77_RS17455 (PHA77_17455) | 80755..80997 | - | 243 | Protein_87 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| PHA77_RS17460 (PHA77_17460) | 81104..82309 | + | 1206 | WP_279509653.1 | IS256 family transposase ISEae1 | Transposase |
| PHA77_RS17465 (PHA77_17465) | 82460..82591 | + | 132 | WP_279509719.1 | hypothetical protein | - |
| PHA77_RS17470 (PHA77_17470) | 82950..83828 | + | 879 | WP_279509720.1 | hypothetical protein | - |
| PHA77_RS17475 (PHA77_17475) | 84037..84705 | + | 669 | WP_279509721.1 | hypothetical protein | - |
| PHA77_RS17480 (PHA77_17480) | 84742..85446 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PHA77_RS17485 (PHA77_17485) | 85392..85784 | - | 393 | WP_279509722.1 | hypothetical protein | - |
| PHA77_RS17490 (PHA77_17490) | 86326..86958 | + | 633 | WP_279509723.1 | hypothetical protein | - |
| PHA77_RS17495 (PHA77_17495) | 87255..87548 | - | 294 | WP_279509724.1 | hypothetical protein | - |
| PHA77_RS17500 (PHA77_17500) | 87549..88400 | - | 852 | WP_279509725.1 | hypothetical protein | VF |
| PHA77_RS17505 (PHA77_17505) | 88961..89874 | + | 914 | Protein_97 | IS3 family transposase ISEc25 | Transposase |
| PHA77_RS17510 (PHA77_17510) | 90244..90408 | + | 165 | Protein_98 | IS66 family insertion sequence element accessory protein TnpB | - |
| PHA77_RS17515 (PHA77_17515) | 90478..91643 | + | 1166 | WP_279509726.1 | IS3 family transposase ISKpn37 | Transposase |
| PHA77_RS17520 (PHA77_17520) | 91665..92012 | + | 348 | WP_279509727.1 | IS66 family transposase ISCro1 | Transposase |
| PHA77_RS17525 (PHA77_17525) | 92032..93603 | + | 1572 | WP_279509728.1 | IS66 family transposase ISCro1 | Transposase |
| PHA77_RS17530 (PHA77_17530) | 93633..93938 | - | 306 | Protein_102 | DNA methyltransferase | - |
| PHA77_RS17535 (PHA77_17535) | 94018..94089 | - | 72 | Protein_103 | hypothetical protein | - |
| PHA77_RS17540 (PHA77_17540) | 94490..95398 | - | 909 | Protein_104 | IS3 family transposase ISLad1 | Transposase |
| PHA77_RS17545 (PHA77_17545) | 95405..96334 | - | 930 | Protein_105 | IS30 family transposase ISAhy3 | Transposase |
| PHA77_RS17550 (PHA77_17550) | 96401..97156 | - | 756 | WP_097364736.1 | IS21 family transposase ISEc10 | Transposase |
| PHA77_RS17555 (PHA77_17555) | 97153..98652 | - | 1500 | WP_279509730.1 | IS21 family transposase ISEc10 | Transposase |
| PHA77_RS17560 (PHA77_17560) | 98739..98972 | - | 234 | Protein_108 | IS30 family transposase ISAhy3 | Transposase |
| PHA77_RS17565 (PHA77_17565) | 99040..99294 | - | 255 | Protein_109 | IS3 family transposase IS911 | Transposase |
| PHA77_RS17570 (PHA77_17570) | 99357..100430 | - | 1074 | Protein_110 | IS110 family transposase ISWpi13 | Transposase |
| PHA77_RS17575 (PHA77_17575) | 100661..100912 | - | 252 | Protein_111 | IS3 family transposase ISVch4 | Transposase |
| PHA77_RS17580 (PHA77_17580) | 100980..101843 | - | 864 | WP_279509731.1 | ISNCY family transposase ISBj12 | Transposase |
| PHA77_RS17585 (PHA77_17585) | 102071..103042 | + | 972 | WP_279509733.1 | ISNCY family transposase ISRor2 | VF |
| PHA77_RS17590 (PHA77_17590) | 103708..105531 | + | 1824 | WP_279509734.1 | Heme/hemopexin transporter protein HuxB | VF |
| PHA77_RS17595 (PHA77_17595) | 106119..107738 | - | 1620 | WP_279509735.1 | ISL3 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|