MGE detailed information
MGE type: IScluster/Tn MGE length: 17693 bp
Accession: NZ_CP116479 Location: 41635..59327 Organism: Pseudomonas syringae pv. actinidiae strain PSA.AH.01 Replicon: plasmid p
Accession: NZ_CP116479 Location: 41635..59327 Organism: Pseudomonas syringae pv. actinidiae strain PSA.AH.01 Replicon: plasmid p
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA47_RS29660 (PHA47_29660) | 36738..37361 | - | 624 | WP_017684946.1 | glycoside hydrolase family 25 protein | - |
| PHA47_RS29665 (PHA47_29665) | 37610..37966 | - | 357 | WP_017684945.1 | hypothetical protein | - |
| PHA47_RS29670 (PHA47_29670) | 37976..39007 | - | 1032 | WP_017704948.1 | P-type DNA transfer ATPase VirB11 | - |
| PHA47_RS29675 (PHA47_29675) | 39017..40387 | - | 1371 | WP_017684943.1 | TrbI/VirB10 family protein | - |
| PHA47_RS29680 (PHA47_29680) | 40374..41183 | - | 810 | WP_017684942.1 | P-type conjugative transfer protein VirB9 | - |
| PHA47_RS29685 (PHA47_29685) | 41173..41478 | - | 306 | WP_017706770.1 | type IV secretion system protein | - |
| PHA47_RS29690 (PHA47_29690) | 41566..43144 | + | 1579 | WP_076612065.1 | IS3 family transposase ISPsy31 | Transposase |
| PHA47_RS29695 (PHA47_29695) | 43232..43768 | + | 537 | WP_225877707.1 | HTH-type transcriptional regulator MalT | VF |
| PHA47_RS29700 (PHA47_29700) | 43900..44250 | - | 351 | WP_017685123.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PHA47_RS29705 (PHA47_29705) | 44266..44514 | - | 249 | WP_017685122.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| PHA47_RS29710 (PHA47_29710) | 44855..45817 | + | 963 | WP_017685121.1 | tyrosine-type recombinase/integrase | - |
| PHA47_RS29715 (PHA47_29715) | 46015..46230 | - | 216 | Protein_48 | IS630 family transposase ISPsy32 | Transposase |
| PHA47_RS29720 (PHA47_29720) | 46262..47839 | - | 1578 | Protein_49 | IS3 family transposase ISPsy31 | Transposase |
| PHA47_RS29725 (PHA47_29725) | 47887..48749 | - | 863 | Protein_50 | IS630 family transposase ISPsy32 | Transposase |
| PHA47_RS29730 (PHA47_29730) | 48855..49325 | + | 471 | WP_237243125.1 | hypothetical protein | - |
| PHA47_RS29735 (PHA47_29735) | 49407..49694 | + | 288 | WP_153303634.1 | hypothetical protein | - |
| PHA47_RS29740 (PHA47_29740) | 49843..50169 | + | 327 | WP_020362212.1 | hypothetical protein | - |
| PHA47_RS29745 (PHA47_29745) | 50191..51372 | - | 1182 | Protein_54 | IS3 family transposase ISPsy28 | Transposase |
| PHA47_RS29750 (PHA47_29750) | 51434..51694 | + | 261 | Protein_55 | hypothetical protein | - |
| PHA47_RS29755 (PHA47_29755) | 51729..51983 | + | 255 | WP_003381350.1 | hypothetical protein | - |
| PHA47_RS29760 (PHA47_29760) | 52388..52927 | + | 540 | WP_017685167.1 | hypothetical protein | - |
| PHA47_RS29765 (PHA47_29765) | 53206..54387 | + | 1182 | Protein_58 | IS3 family transposase ISPsy28 | Transposase |
| PHA47_RS29770 (PHA47_29770) | 54440..54850 | - | 411 | Protein_59 | ParA family protein | - |
| PHA47_RS29775 (PHA47_29775) | 55238..55858 | + | 621 | WP_005769724.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PHA47_RS29780 (PHA47_29780) | 55877..56173 | - | 297 | WP_017685207.1 | hypothetical protein | - |
| PHA47_RS29785 (PHA47_29785) | 56184..56405 | - | 222 | WP_004666801.1 | hypothetical protein | - |
| PHA47_RS29790 (PHA47_29790) | 56443..56856 | - | 414 | WP_017685173.1 | TraR/DksA family transcriptional regulator | - |
| PHA47_RS29795 (PHA47_29795) | 56886..57110 | - | 225 | WP_017699623.1 | carbon storage regulator | - |
| PHA47_RS29800 (PHA47_29800) | 57374..57553 | - | 180 | WP_017685223.1 | hypothetical protein | - |
| PHA47_RS29805 (PHA47_29805) | 57749..59327 | + | 1579 | WP_076612065.1 | IS3 family transposase ISPsy31 | Transposase |
| PHA47_RS29810 (PHA47_29810) | 59780..60412 | - | 633 | WP_020325447.1 | hypothetical protein | - |
| PHA47_RS29815 (PHA47_29815) | 60409..60639 | - | 231 | WP_017685038.1 | hypothetical protein | - |
| PHA47_RS29820 (PHA47_29820) | 60677..61093 | - | 417 | WP_017685037.1 | hypothetical protein | - |
| PHA47_RS29825 (PHA47_29825) | 61648..61893 | - | 246 | WP_017685036.1 | hypothetical protein | - |
| PHA47_RS29830 (PHA47_29830) | 62634..62858 | + | 225 | Protein_71 | IS5/IS1182 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|