MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 77260 bp
Accession: NZ_CP116479 Location: 1..77260 Organism: Pseudomonas syringae pv. actinidiae strain PSA.AH.01 Replicon: plasmid p
Accession: NZ_CP116479 Location: 1..77260 Organism: Pseudomonas syringae pv. actinidiae strain PSA.AH.01 Replicon: plasmid p
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA47_RS29480 (PHA47_29480) | 264..3638 | - | 3375 | WP_017684689.1 | hypothetical protein | VF |
| PHA47_RS29485 (PHA47_29485) | 4603..5223 | - | 621 | WP_005769724.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PHA47_RS29490 (PHA47_29490) | 5491..6783 | + | 1293 | WP_017685048.1 | glycoside hydrolase family 68 protein | - |
| PHA47_RS29495 (PHA47_29495) | 7760..8710 | - | 951 | WP_017685047.1 | alpha/beta fold hydrolase | - |
| PHA47_RS29500 (PHA47_29500) | 8697..9605 | - | 909 | WP_017685046.1 | EamA family transporter | - |
| PHA47_RS29505 (PHA47_29505) | 9608..10225 | - | 618 | WP_017699540.1 | flavodoxin family protein | - |
| PHA47_RS29510 (PHA47_29510) | 10229..10912 | - | 684 | WP_003319174.1 | iron-containing redox enzyme family protein | - |
| PHA47_RS29515 (PHA47_29515) | 10914..11459 | - | 546 | WP_005734707.1 | hypothetical protein | - |
| PHA47_RS29520 (PHA47_29520) | 11466..12734 | - | 1269 | WP_237243102.1 | phenylacetate--CoA ligase family protein | - |
| PHA47_RS29525 (PHA47_29525) | 12882..13948 | + | 1067 | Protein_10 | IS630 family transposase ISPsy32 | Transposase |
| PHA47_RS29530 (PHA47_29530) | 14619..16085 | + | 1467 | WP_005734708.1 | 2-amino-4-deoxychorismate synthase | VF |
| PHA47_RS29535 (PHA47_29535) | 16082..16675 | + | 594 | WP_005734709.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| PHA47_RS29540 (PHA47_29540) | 16733..17575 | + | 843 | WP_005734710.1 | Transcriptional activator protein LasR | VF |
| PHA47_RS29545 (PHA47_29545) | 17870..19825 | - | 1956 | WP_085714279.1 | hypothetical protein | Relaxase |
| PHA47_RS29550 (PHA47_29550) | 19836..20165 | - | 330 | WP_003344297.1 | plasmid mobilization protein MobA | - |
| PHA47_RS29555 (PHA47_29555) | 20411..20755 | + | 345 | WP_017684528.1 | hypothetical protein | - |
| PHA47_RS29560 (PHA47_29560) | 20728..21009 | + | 282 | WP_074291468.1 | hypothetical protein | - |
| PHA47_RS29565 (PHA47_29565) | 21053..21331 | + | 279 | WP_017684526.1 | hypothetical protein | - |
| PHA47_RS29570 (PHA47_29570) | 21397..21597 | - | 201 | WP_017684525.1 | hypothetical protein | - |
| PHA47_RS29575 (PHA47_29575) | 21665..22501 | - | 837 | WP_017684524.1 | DUF932 domain-containing protein | - |
| PHA47_RS29580 (PHA47_29580) | 22548..22925 | - | 378 | WP_003344294.1 | hypothetical protein | - |
| PHA47_RS29585 (PHA47_29585) | 23360..23803 | - | 444 | WP_017684523.1 | hypothetical protein | - |
| PHA47_RS29590 (PHA47_29590) | 23962..24501 | - | 540 | Protein_23 | IS5 family transposase ISPsy19 | Transposase |
| PHA47_RS29595 (PHA47_29595) | 24675..26306 | + | 1632 | WP_020358614.1 | hypothetical protein | VF |
| PHA47_RS29600 (PHA47_29600) | 26475..26724 | - | 250 | Protein_25 | transposase | - |
| PHA47_RS29605 (PHA47_29605) | 26759..27001 | + | 243 | Protein_26 | Tn3 family transposase ISPsy42 | Transposase |
| PHA47_RS29610 (PHA47_29610) | 27042..27445 | + | 404 | Protein_27 | hypothetical protein | - |
| PHA47_RS29615 (PHA47_29615) | 27478..27594 | - | 117 | Protein_28 | transposase | - |
| PHA47_RS29620 (PHA47_29620) | 27606..28001 | - | 396 | WP_004666661.1 | type II toxin-antitoxin system VapC family toxin | - |
| PHA47_RS29625 (PHA47_29625) | 27998..28249 | - | 252 | WP_003108276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| PHA47_RS29630 (PHA47_29630) | 28428..29000 | + | 573 | WP_004666660.1 | Tn3 family transposase ISPsy42 | Transposase |
| PHA47_RS29635 (PHA47_29635) | 29029..32058 | + | 3030 | WP_017682807.1 | Tn3 family transposase ISPsy42 | Transposase |
| PHA47_RS29640 (PHA47_29640) | 32081..33979 | - | 1899 | WP_017684961.1 | DNA topoisomerase | - |
| PHA47_RS29645 (PHA47_29645) | 34007..34369 | - | 363 | WP_015060690.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PHA47_RS29650 (PHA47_29650) | 34410..36062 | - | 1653 | WP_017684962.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PHA47_RS29655 (PHA47_29655) | 36062..36292 | - | 231 | WP_017684963.1 | hypothetical protein | - |
| PHA47_RS29660 (PHA47_29660) | 36738..37361 | - | 624 | WP_017684946.1 | glycoside hydrolase family 25 protein | - |
| PHA47_RS29665 (PHA47_29665) | 37610..37966 | - | 357 | WP_017684945.1 | hypothetical protein | - |
| PHA47_RS29670 (PHA47_29670) | 37976..39007 | - | 1032 | WP_017704948.1 | Type IV secretion system protein VirB11 | VF |
| PHA47_RS29675 (PHA47_29675) | 39017..40387 | - | 1371 | WP_017684943.1 | hypothetical protein | VF |
| PHA47_RS29680 (PHA47_29680) | 40374..41183 | - | 810 | WP_017684942.1 | P-type conjugative transfer protein VirB9 | - |
| PHA47_RS29685 (PHA47_29685) | 41173..41478 | - | 306 | WP_017706770.1 | hypothetical protein | VF |
| PHA47_RS29690 (PHA47_29690) | 41566..43144 | + | 1579 | WP_076612065.1 | IS3 family transposase ISPsy31 | Transposase |
| PHA47_RS29695 (PHA47_29695) | 43232..43768 | + | 537 | WP_225877707.1 | HTH-type transcriptional regulator MalT | VF |
| PHA47_RS29700 (PHA47_29700) | 43900..44250 | - | 351 | WP_017685123.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PHA47_RS29705 (PHA47_29705) | 44266..44514 | - | 249 | WP_017685122.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| PHA47_RS29710 (PHA47_29710) | 44855..45817 | + | 963 | WP_017685121.1 | tyrosine-type recombinase/integrase | - |
| PHA47_RS29715 (PHA47_29715) | 46015..46230 | - | 216 | Protein_48 | IS630 family transposase ISPsy32 | Transposase |
| PHA47_RS29720 (PHA47_29720) | 46262..47839 | - | 1578 | Protein_49 | IS3 family transposase ISPsy31 | Transposase |
| PHA47_RS29725 (PHA47_29725) | 47887..48749 | - | 863 | Protein_50 | IS630 family transposase ISPsy32 | Transposase |
| PHA47_RS29730 (PHA47_29730) | 48855..49325 | + | 471 | WP_237243125.1 | hypothetical protein | - |
| PHA47_RS29735 (PHA47_29735) | 49407..49694 | + | 288 | WP_153303634.1 | hypothetical protein | - |
| PHA47_RS29740 (PHA47_29740) | 49843..50169 | + | 327 | WP_020362212.1 | hypothetical protein | - |
| PHA47_RS29745 (PHA47_29745) | 50191..51372 | - | 1182 | Protein_54 | IS3 family transposase ISPsy28 | Transposase |
| PHA47_RS29750 (PHA47_29750) | 51434..51694 | + | 261 | Protein_55 | hypothetical protein | - |
| PHA47_RS29755 (PHA47_29755) | 51729..51983 | + | 255 | WP_003381350.1 | hypothetical protein | - |
| PHA47_RS29760 (PHA47_29760) | 52388..52927 | + | 540 | WP_017685167.1 | hypothetical protein | - |
| PHA47_RS29765 (PHA47_29765) | 53206..54387 | + | 1182 | Protein_58 | IS3 family transposase ISPsy28 | Transposase |
| PHA47_RS29770 (PHA47_29770) | 54440..54850 | - | 411 | Protein_59 | ParA family protein | - |
| PHA47_RS29775 (PHA47_29775) | 55238..55858 | + | 621 | WP_005769724.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PHA47_RS29780 (PHA47_29780) | 55877..56173 | - | 297 | WP_017685207.1 | hypothetical protein | - |
| PHA47_RS29785 (PHA47_29785) | 56184..56405 | - | 222 | WP_004666801.1 | hypothetical protein | - |
| PHA47_RS29790 (PHA47_29790) | 56443..56856 | - | 414 | WP_017685173.1 | TraR/DksA family transcriptional regulator | - |
| PHA47_RS29795 (PHA47_29795) | 56886..57110 | - | 225 | WP_017699623.1 | carbon storage regulator | - |
| PHA47_RS29800 (PHA47_29800) | 57374..57553 | - | 180 | WP_017685223.1 | hypothetical protein | - |
| PHA47_RS29805 (PHA47_29805) | 57749..59327 | + | 1579 | WP_076612065.1 | IS3 family transposase ISPsy31 | Transposase |
| PHA47_RS29810 (PHA47_29810) | 59780..60412 | - | 633 | WP_020325447.1 | hypothetical protein | - |
| PHA47_RS29815 (PHA47_29815) | 60409..60639 | - | 231 | WP_017685038.1 | hypothetical protein | - |
| PHA47_RS29820 (PHA47_29820) | 60677..61093 | - | 417 | WP_017685037.1 | hypothetical protein | - |
| PHA47_RS29825 (PHA47_29825) | 61648..61893 | - | 246 | WP_017685036.1 | hypothetical protein | - |
| PHA47_RS29830 (PHA47_29830) | 62634..62858 | + | 225 | Protein_71 | IS5/IS1182 family transposase | - |
| PHA47_RS29835 (PHA47_29835) | 63002..65446 | - | 2445 | WP_179154912.1 | type III effector | - |
| PHA47_RS29840 (PHA47_29840) | 65821..66423 | + | 603 | Protein_73 | type III effector | - |
| PHA47_RS29845 (PHA47_29845) | 66527..67300 | + | 774 | Protein_74 | type III effector | - |
| PHA47_RS29850 (PHA47_29850) | 67490..67705 | - | 216 | WP_017685034.1 | hypothetical protein | - |
| PHA47_RS29855 (PHA47_29855) | 67756..67986 | - | 231 | Protein_76 | DUF159 family protein | - |
| PHA47_RS29860 (PHA47_29860) | 68142..68690 | + | 549 | WP_017685033.1 | hypothetical protein | - |
| PHA47_RS29865 (PHA47_29865) | 69254..69409 | - | 156 | WP_153303633.1 | hypothetical protein | - |
| PHA47_RS29870 (PHA47_29870) | 69525..70181 | + | 657 | WP_017685030.1 | AAA family ATPase | - |
| PHA47_RS29875 (PHA47_29875) | 70240..70518 | + | 279 | WP_017705312.1 | ribbon-helix-helix protein, CopG family | - |
| PHA47_RS29880 (PHA47_29880) | 71094..71402 | - | 309 | WP_017684681.1 | DUF4113 domain-containing protein | - |
| PHA47_RS29885 (PHA47_29885) | 72006..72158 | + | 153 | WP_153303635.1 | hypothetical protein | - |
| PHA47_RS29890 (PHA47_29890) | 72218..72736 | - | 519 | Protein_83 | DUF4113 domain-containing protein | - |
| PHA47_RS29895 (PHA47_29895) | 73330..73644 | - | 315 | WP_017684684.1 | HU family DNA-binding protein | - |
| PHA47_RS29900 (PHA47_29900) | 73856..75169 | - | 1314 | WP_017684685.1 | replication initiation protein | - |
| PHA47_RS29905 (PHA47_29905) | 75567..75794 | - | 228 | WP_017684686.1 | hypothetical protein | - |
| PHA47_RS29910 (PHA47_29910) | 75874..76302 | - | 429 | WP_017684687.1 | GntR family transcriptional regulator | - |
| PHA47_RS29915 (PHA47_29915) | 76490..77053 | - | 564 | WP_010206573.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|