MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 96347 bp
Accession: NZ_CP116390 Location: 2057656..2154002 Organism: Bifidobacterium longum strain LBUX23 Replicon: chromosome
Accession: NZ_CP116390 Location: 2057656..2154002 Organism: Bifidobacterium longum strain LBUX23 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB40_RS08655 (PIB40_08655) | 2053765..2055063 | - | 1299 | WP_007057383.1 | glycoside hydrolase family 125 protein | - |
| PIB40_RS08660 (PIB40_08660) | 2055338..2055640 | - | 303 | WP_007054417.1 | hypothetical protein | - |
| PIB40_RS08665 (PIB40_08665) | 2055707..2055817 | - | 111 | WP_007054418.1 | hypothetical protein | - |
| PIB40_RS08670 (PIB40_08670) | 2055926..2056315 | - | 390 | WP_007054419.1 | VOC family protein | - |
| PIB40_RS08675 (PIB40_08675) | 2056390..2057286 | - | 897 | WP_007057385.1 | carbohydrate kinase | - |
| PIB40_RS08680 (PIB40_08680) | 2057359..2058573 | - | 1215 | WP_010080891.1 | ROK family transcriptional regulator | - |
| PIB40_RS08685 (PIB40_08685) | 2058800..2059714 | + | 915 | WP_012471798.1 | ROK family protein | - |
| PIB40_RS08690 (PIB40_08690) | 2059854..2060978 | - | 1125 | WP_010080889.1 | ROK family transcriptional regulator | - |
| PIB40_RS08695 (PIB40_08695) | 2061316..2062128 | + | 813 | WP_007057381.1 | glucosamine-6-phosphate deaminase | - |
| PIB40_RS08700 (PIB40_08700) | 2062184..2063467 | + | 1284 | WP_271710372.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
| PIB40_RS08705 (PIB40_08705) | 2063747..2065381 | + | 1635 | WP_012471800.1 | ABC transporter substrate-binding protein | - |
| PIB40_RS08710 (PIB40_08710) | 2065547..2066638 | + | 1092 | WP_007052566.1 | ABC transporter permease | - |
| PIB40_RS08715 (PIB40_08715) | 2066640..2067809 | + | 1170 | WP_131312820.1 | ABC transporter permease | - |
| PIB40_RS08720 (PIB40_08720) | 2067813..2069522 | + | 1710 | WP_007054426.1 | Glutathione import ATP-binding protein GsiA | VF |
| PIB40_RS08725 (PIB40_08725) | 2069572..2070093 | - | 522 | WP_007057255.1 | NUDIX domain-containing protein | - |
| PIB40_RS08730 (PIB40_08730) | 2070142..2071737 | - | 1596 | WP_013582815.1 | aminopeptidase P family protein | - |
| PIB40_RS08735 (PIB40_08735) | 2072041..2072892 | - | 852 | WP_007055262.1 | hypothetical protein | - |
| PIB40_RS08740 (PIB40_08740) | 2074147..2075730 | + | 1584 | WP_271710373.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| PIB40_RS08745 (PIB40_08745) | 2075791..2079468 | + | 3678 | WP_271710374.1 | chromosome segregation protein SMC | - |
| PIB40_RS08750 (PIB40_08750) | 2079587..2080582 | - | 996 | WP_101629105.1 | GNAT family N-acetyltransferase | - |
| PIB40_RS08755 (PIB40_08755) | 2080704..2082257 | - | 1554 | WP_271710375.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| PIB40_RS08760 (PIB40_08760) | 2082396..2083184 | + | 789 | WP_161519690.1 | sigma-70 family RNA polymerase sigma factor | - |
| PIB40_RS08765 (PIB40_08765) | 2083184..2083504 | + | 321 | WP_271710376.1 | hypothetical protein | - |
| PIB40_RS08770 (PIB40_08770) | 2083770..2084714 | - | 945 | WP_007054436.1 | aldose 1-epimerase family protein | - |
| PIB40_RS08775 (PIB40_08775) | 2084839..2085795 | - | 957 | WP_271710377.1 | aldose 1-epimerase family protein | - |
| PIB40_RS08780 (PIB40_08780) | 2086086..2087078 | + | 993 | WP_007054438.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| PIB40_RS08785 (PIB40_08785) | 2087118..2087627 | - | 510 | WP_007054439.1 | Cys-tRNA(Pro) deacylase | - |
| PIB40_RS08790 (PIB40_08790) | 2087721..2088779 | - | 1059 | WP_007052589.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| PIB40_RS08795 (PIB40_08795) | 2089020..2089745 | - | 726 | WP_007052590.1 | thiamine diphosphokinase | - |
| PIB40_RS08800 (PIB40_08800) | 2089847..2090062 | + | 216 | WP_131223952.1 | hypothetical protein | - |
| PIB40_RS08805 (PIB40_08805) | 2089998..2090981 | + | 984 | WP_242669718.1 | fused MFS/spermidine synthase | - |
| PIB40_RS08810 (PIB40_08810) | 2091266..2091988 | + | 723 | WP_032682519.1 | translation initiation factor IF-3 | - |
| PIB40_RS08815 (PIB40_08815) | 2091969..2092163 | + | 195 | WP_007052593.1 | 50S ribosomal protein L35 | - |
| PIB40_RS08820 (PIB40_08820) | 2092216..2092599 | + | 384 | WP_007054446.1 | 50S ribosomal protein L20 | - |
| PIB40_RS08825 (PIB40_08825) | 2092669..2093595 | + | 927 | WP_271710378.1 | Tyrosine recombinase XerD | VF |
| PIB40_RS08830 (PIB40_08830) | 2093723..2096605 | + | 2883 | WP_271710379.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| PIB40_RS08835 (PIB40_08835) | 2096867..2097706 | + | 840 | WP_165500100.1 | hypothetical protein | VF |
| PIB40_RS08840 (PIB40_08840) | 2097725..2098639 | + | 915 | WP_271710380.1 | ScpA family protein | - |
| PIB40_RS08845 (PIB40_08845) | 2098652..2099368 | + | 717 | WP_007055260.1 | SMC-Scp complex subunit ScpB | - |
| PIB40_RS08850 (PIB40_08850) | 2099500..2100327 | + | 828 | WP_007054449.1 | NUDIX domain-containing protein | - |
| PIB40_RS08855 (PIB40_08855) | 2100387..2101667 | + | 1281 | WP_007052601.1 | quinolinate synthase NadA | - |
| PIB40_RS08860 (PIB40_08860) | 2101759..2103390 | + | 1632 | WP_007054450.1 | L-aspartate oxidase | - |
| PIB40_RS08865 (PIB40_08865) | 2103394..2104287 | + | 894 | WP_007052603.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PIB40_RS08870 (PIB40_08870) | 2104290..2105537 | + | 1248 | WP_007054451.1 | cysteine desulfurase family protein | - |
| PIB40_RS08875 (PIB40_08875) | 2105569..2106918 | + | 1350 | WP_007052605.1 | MFS transporter | - |
| PIB40_RS08880 (PIB40_08880) | 2107233..2109164 | + | 1932 | WP_007052606.1 | GTP-binding protein TypA/BipA | VF |
| PIB40_RS08885 (PIB40_08885) | 2109264..2109710 | + | 447 | WP_007052607.1 | alcohol dehydrogenase | - |
| PIB40_RS08890 (PIB40_08890) | 2109790..2110767 | + | 978 | WP_008783121.1 | prephenate dehydratase domain-containing protein | - |
| PIB40_RS08895 (PIB40_08895) | 2110761..2111828 | + | 1068 | WP_011068024.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| PIB40_RS08900 (PIB40_08900) | 2112040..2112297 | + | 258 | WP_007052610.1 | hypothetical protein | - |
| PIB40_RS08905 (PIB40_08905) | 2112332..2113399 | + | 1068 | WP_271710381.1 | Tyrosine recombinase XerC | VF |
| PIB40_RS08910 (PIB40_08910) | 2113653..2115293 | + | 1641 | WP_007054457.1 | ABC transporter substrate-binding protein | - |
| PIB40_RS08915 (PIB40_08915) | 2115595..2116521 | + | 927 | WP_007052614.1 | ABC transporter permease | - |
| PIB40_RS08920 (PIB40_08920) | 2116540..2117544 | + | 1005 | WP_003832139.1 | ABC transporter permease | - |
| PIB40_RS08925 (PIB40_08925) | 2117567..2119576 | + | 2010 | WP_271710382.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| PIB40_RS08930 (PIB40_08930) | 2119885..2120745 | - | 861 | WP_271710383.1 | exodeoxyribonuclease III | - |
| PIB40_RS08935 (PIB40_08935) | 2120870..2121724 | + | 855 | WP_071475219.1 | DUF3710 domain-containing protein | - |
| PIB40_RS08940 (PIB40_08940) | 2121740..2122498 | + | 759 | WP_008783114.1 | DUF3159 domain-containing protein | - |
| PIB40_RS08945 (PIB40_08945) | 2122488..2123756 | + | 1269 | WP_271710632.1 | RsmD family RNA methyltransferase | - |
| PIB40_RS08950 (PIB40_08950) | 2123768..2124463 | + | 696 | WP_032683090.1 | hypothetical protein | - |
| PIB40_RS08955 (PIB40_08955) | 2124554..2127067 | + | 2514 | WP_271710384.1 | HAD-IC family P-type ATPase | - |
| PIB40_RS08960 (PIB40_08960) | 2127188..2129887 | + | 2700 | WP_013582802.1 | aconitate hydratase AcnA | - |
| PIB40_RS08965 (PIB40_08965) | 2130032..2130424 | + | 393 | WP_007057212.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| PIB40_RS08970 (PIB40_08970) | 2130421..2130912 | + | 492 | WP_271710385.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PIB40_RS08975 (PIB40_08975) | 2130962..2133065 | - | 2104 | Protein_1730 | DUF262 domain-containing protein | - |
| PIB40_RS08980 (PIB40_08980) | 2133155..2133796 | - | 642 | WP_007052627.1 | GNAT family N-acetyltransferase | - |
| PIB40_RS08985 (PIB40_08985) | 2133836..2134561 | - | 726 | WP_007056206.1 | Transcriptional regulatory protein LiaR | VF |
| PIB40_RS08990 (PIB40_08990) | 2134596..2135828 | - | 1233 | WP_217061708.1 | histidine kinase | - |
| PIB40_RS08995 (PIB40_08995) | 2136163..2137008 | + | 846 | WP_007057205.1 | DUF5067 domain-containing protein | - |
| PIB40_RS09000 (PIB40_09000) | 2137189..2138088 | + | 900 | WP_007052631.1 | Bax inhibitor-1/YccA family protein | - |
| PIB40_RS09005 (PIB40_09005) | 2138228..2139244 | + | 1017 | WP_271710633.1 | DMT family transporter | - |
| PIB40_RS09010 (PIB40_09010) | 2139277..2140017 | - | 741 | WP_007056209.1 | hypothetical protein | VF |
| PIB40_RS09015 (PIB40_09015) | 2140149..2141603 | + | 1455 | WP_165501081.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| PIB40_RS09020 (PIB40_09020) | 2141614..2142600 | + | 987 | WP_007052636.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| PIB40_RS09025 (PIB40_09025) | 2142634..2143383 | - | 750 | WP_007056215.1 | hypothetical protein | VF |
| PIB40_RS09030 (PIB40_09030) | 2143595..2146504 | + | 2910 | WP_131219348.1 | DNA translocase FtsK | - |
| PIB40_RS09035 (PIB40_09035) | 2146666..2147316 | + | 651 | WP_271710386.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| PIB40_RS09040 (PIB40_09040) | 2147328..2147861 | + | 534 | WP_007054477.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| PIB40_RS09045 (PIB40_09045) | 2147921..2148436 | + | 516 | WP_021975599.1 | helix-turn-helix transcriptional regulator | - |
| PIB40_RS09050 (PIB40_09050) | 2148548..2148781 | + | 234 | WP_021975598.1 | DUF3046 domain-containing protein | - |
| PIB40_RS09055 (PIB40_09055) | 2149082..2150275 | + | 1194 | WP_021975597.1 | recombinase RecA | - |
| PIB40_RS09060 (PIB40_09060) | 2150278..2150871 | + | 594 | WP_032747029.1 | regulatory protein RecX | - |
| PIB40_RS09070 (PIB40_09070) | 2151748..2152410 | + | 663 | WP_007054480.1 | ribosome-associated translation inhibitor RaiA | - |
| PIB40_RS09075 (PIB40_09075) | 2152572..2155466 | + | 2895 | WP_131203198.1 | preprotein translocase subunit SecA | - |
| PIB40_RS09080 (PIB40_09080) | 2155777..2156130 | - | 354 | WP_010080769.1 | transposase | - |
| PIB40_RS09085 (PIB40_09085) | 2156720..2157766 | + | 1047 | WP_195954924.1 | anthranilate phosphoribosyltransferase | - |
| PIB40_RS09090 (PIB40_09090) | 2157812..2158000 | + | 189 | WP_131210079.1 | hypothetical protein | - |
| PIB40_RS09095 (PIB40_09095) | 2158154..2158849 | - | 696 | WP_165506713.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|