MGE detailed information
MGE type: Conjugative plasmid MGE length: 86715 bp
Accession: NZ_CP116200 Location: 1..86715 Organism: Escherichia coli strain DETEC-C31 Replicon: plasmid pDETEC89
Accession: NZ_CP116200 Location: 1..86715 Organism: Escherichia coli strain DETEC-C31 Replicon: plasmid pDETEC89
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB97_RS24635 (455) | 455..1486 | + | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| PIB97_RS24640 (2182) | 2182..2322 | + | 141 | WP_032072206.1 | hypothetical protein | - |
| PIB97_RS24645 (2555) | 2555..3064 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| PIB97_RS24650 (3120) | 3120..3722 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| PIB97_RS24655 (4277) | 4277..5539 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PIB97_RS24660 (5795) | 5795..6670 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| PIB97_RS24665 (6717) | 6717..7061 | - | 345 | Protein_6 | WbuC family cupin fold metalloprotein | - |
| PIB97_RS24670 (7004) | 7004..8398 | + | 1395 | WP_023150520.1 | protein YagA | - |
| PIB97_RS24675 (8913) | 8913..9215 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| PIB97_RS24680 (9212) | 9212..9838 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| PIB97_RS24685 (10026) | 10026..11286 | - | 1261 | Protein_10 | Y-family DNA polymerase | - |
| PIB97_RS24690 (11286) | 11286..11723 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PIB97_RS24695 (11720) | 11720..11968 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PIB97_RS24700 (12386) | 12386..13288 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| PIB97_RS24705 (13292) | 13292..13378 | + | 87 | Protein_14 | hypothetical protein | - |
| PIB97_RS24710 (13383) | 13383..13718 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| PIB97_RS24715 (14056) | 14056..15036 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| PIB97_RS24720 (15039) | 15039..15461 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| PIB97_RS24725 (15465) | 15465..15776 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| PIB97_RS24730 (15852) | 15852..16535 | + | 684 | WP_000086127.1 | DNA methylase | - |
| PIB97_RS24735 (16536) | 16536..16757 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| PIB97_RS24740 (16687) | 16687..17205 | + | 519 | WP_223350510.1 | DUF1380 family protein | - |
| PIB97_RS24745 (17250) | 17250..18020 | + | 771 | WP_012783922.1 | hypothetical protein | - |
| PIB97_RS24750 (18433) | 18433..18858 | + | 426 | WP_001198889.1 | antirestriction protein | - |
| PIB97_RS24755 (18905) | 18905..19327 | + | 423 | WP_000271703.1 | DUF1380 family protein | - |
| PIB97_RS24760 (19324) | 19324..19515 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| PIB97_RS24765 (19653) | 19653..19916 | + | 264 | WP_158213465.1 | hypothetical protein | - |
| PIB97_RS24770 (20300) | 20300..20827 | + | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| PIB97_RS24775 (20885) | 20885..21118 | + | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| PIB97_RS24780 (21177) | 21177..23135 | + | 1959 | WP_271290940.1 | ParB/RepB/Spo0J family partition protein | - |
| PIB97_RS24785 (23188) | 23188..23622 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| PIB97_RS24790 (23619) | 23619..24338 | + | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| PIB97_RS24795 (24335) | 24335..24931 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| PIB97_RS24800 (25393) | 25393..25893 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| PIB97_RS24805 (26622) | 26622..27056 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| PIB97_RS24810 (27150) | 27150..27416 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| PIB97_RS24815 (27593) | 27593..27982 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| PIB97_RS24820 (27979) | 27979..28881 | + | 903 | WP_023150544.1 | ISNCY family transposase ISRor2 | VF |
| PIB97_RS24825 (28943) | 28943..29149 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| PIB97_RS24830 (29180) | 29180..29431 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| PIB97_RS24835 (30011) | 30011..30859 | + | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| PIB97_RS24840 (30945) | 30945..31280 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| PIB97_RS24845 (31514) | 31514..31846 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| PIB97_RS24850 (31857) | 31857..34556 | + | 2700 | WP_012783930.1 | hypothetical protein | Relaxase |
| PIB97_RS24855 (34593) | 34593..36884 | - | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| PIB97_RS24860 (36877) | 36877..37947 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| PIB97_RS24865 (37966) | 37966..39174 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (39354) | 39354..39411 | - | 58 | NuclAT_1 | - | - |
| - (39354) | 39354..39411 | - | 58 | NuclAT_1 | - | - |
| - (39354) | 39354..39411 | - | 58 | NuclAT_1 | - | - |
| - (39354) | 39354..39411 | - | 58 | NuclAT_1 | - | - |
| PIB97_RS24870 (39481) | 39481..40566 | - | 1086 | WP_000080543.1 | protein finQ | - |
| - (40775) | 40775..40835 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (40775) | 40775..40835 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (40775) | 40775..40835 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (40775) | 40775..40835 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| PIB97_RS24875 (40887) | 40887..41039 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| PIB97_RS24880 (41111) | 41111..41362 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| PIB97_RS24885 (41863) | 41863..41958 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| PIB97_RS24890 (42023) | 42023..42199 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| PIB97_RS24895 (42591) | 42591..42800 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| PIB97_RS24900 (42872) | 42872..43534 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PIB97_RS24905 (43605) | 43605..45773 | - | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| PIB97_RS24910 (45870) | 45870..46454 | - | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| PIB97_RS24915 (46483) | 46483..47685 | - | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| PIB97_RS24920 (47652) | 47652..48266 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| PIB97_RS24925 (48266) | 48266..51310 | - | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| PIB97_RS24930 (51400) | 51400..52200 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| PIB97_RS24935 (52184) | 52184..52372 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| PIB97_RS24940 (52436) | 52436..52840 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| PIB97_RS24945 (52891) | 52891..53418 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| PIB97_RS24950 (53418) | 53418..54122 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| PIB97_RS24955 (54122) | 54122..55411 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| PIB97_RS24960 (55414) | 55414..56397 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| PIB97_RS24965 (56408) | 56408..57100 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| PIB97_RS24970 (57097) | 57097..57444 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| PIB97_RS24975 (57462) | 57462..61229 | - | 3768 | WP_012783940.1 | DUF5710 domain-containing protein | - |
| PIB97_RS24980 (61319) | 61319..61870 | - | 552 | WP_012783942.1 | Phospholipase D | VF |
| PIB97_RS24985 (61885) | 61885..62175 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| PIB97_RS24990 (62172) | 62172..63320 | - | 1149 | WP_001024971.1 | putative protein YggR | VF |
| PIB97_RS24995 (63317) | 63317..64135 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| PIB97_RS25000 (64132) | 64132..64590 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| PIB97_RS25005 (64984) | 64984..65568 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| PIB97_RS25010 (65628) | 65628..66830 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| PIB97_RS25015 (66915) | 66915..67739 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| PIB97_RS25020 (67890) | 67890..69044 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| PIB97_RS25025 (70565) | 70565..70813 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| PIB97_RS25030 (70810) | 70810..72102 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| PIB97_RS25035 (72102) | 72102..72758 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| PIB97_RS25040 (72743) | 72743..73303 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| PIB97_RS25045 (73313) | 73313..73927 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| PIB97_RS25050 (73945) | 73945..75042 | - | 1098 | WP_001208805.1 | hypothetical protein | VF |
| PIB97_RS25055 (75055) | 75055..76608 | - | 1554 | WP_000362202.1 | hypothetical protein | VF |
| PIB97_RS25060 (76619) | 76619..77071 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| PIB97_RS25065 (77058) | 77058..78353 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| PIB97_RS25070 (78346) | 78346..80028 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| PIB97_RS25075 (80042) | 80042..80479 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| PIB97_RS25080 (80479) | 80479..81546 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| PIB97_RS25085 (82220) | 82220..82672 | - | 453 | WP_001535696.1 | hypothetical protein | - |
| PIB97_RS25090 (82715) | 82715..82969 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| PIB97_RS25095 (83237) | 83237..83803 | - | 567 | WP_000776428.1 | protein TraD | - |
| PIB97_RS25100 (83817) | 83817..84500 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| PIB97_RS25105 (84754) | 84754..85287 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| PIB97_RS25110 (85729) | 85729..86016 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| PIB97_RS25115 (85934) | 85934..86164 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|