MGE detailed information
MGE type: Genomic_island MGE length: 12937 bp
Accession: NZ_CP116188 Location: 2354966..2367902 Organism: Escherichia coli strain DETEC-E223 Replicon: chromosome
Accession: NZ_CP116188 Location: 2354966..2367902 Organism: Escherichia coli strain DETEC-E223 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC88_RS11570 (2351781) | 2351781..2353466 | - | 1686 | WP_000628576.1 | ABC transporter ATP-binding protein/permease | - |
| PIC88_RS11575 (2353669) | 2353669..2353791 | + | 123 | WP_120795387.1 | protein YneP | - |
| PIC88_RS11580 (2353757) | 2353757..2354914 | - | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| PIC88_RS11585 (2354966) | 2354966..2356648 | - | 1683 | WP_001295684.1 | sulfatase | - |
| PIC88_RS11590 (2357050) | 2357050..2357811 | - | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| PIC88_RS11595 (2357886) | 2357886..2358083 | - | 198 | WP_000543384.1 | two-component system connector SafA | - |
| PIC88_RS11600 (2358331) | 2358331..2360610 | - | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| PIC88_RS11605 (2360944) | 2360944..2361858 | - | 915 | WP_000520662.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| PIC88_RS11610 (2361917) | 2361917..2362420 | - | 504 | WP_000825452.1 | Protein FimG | VF |
| PIC88_RS11615 (2362433) | 2362433..2362963 | - | 531 | WP_000876763.1 | Protein FimF | VF |
| PIC88_RS11620 (2362977) | 2362977..2364203 | - | 1227 | Protein_2275 | Outer membrane usher protein FimD | VF |
| PIC88_RS11625 (2364458) | 2364458..2364550 | - | 93 | Protein_2276 | hypothetical protein | - |
| PIC88_RS11630 (2364642) | 2364642..2365870 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| PIC88_RS11635 (2365886) | 2365886..2366002 | - | 117 | Protein_2278 | AraC family transcriptional regulator | - |
| PIC88_RS11640 (2366314) | 2366314..2367636 | - | 1323 | WP_048217844.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| PIC88_RS11645 (2367636) | 2367636..2367902 | - | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.003 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.003 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.003 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.003 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.003 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.003 |