MGE detailed information
MGE type: Conjugative plasmid MGE length: 88352 bp
Accession: NZ_CP116171 Location: 1..88352 Organism: Escherichia coli strain DETEC-P1056 Replicon: plasmid pDETEC82
Accession: NZ_CP116171 Location: 1..88352 Organism: Escherichia coli strain DETEC-P1056 Replicon: plasmid pDETEC82
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC86_RS23690 (PIC86_23685) | 495..1367 | + | 873 | WP_000729438.1 | incFII family plasmid replication initiator RepA | - |
| PIC86_RS23695 (PIC86_23690) | 2062..2220 | + | 159 | WP_000829588.1 | hypothetical protein | - |
| PIC86_RS23700 (PIC86_23695) | 2275..2544 | + | 270 | WP_000079932.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| PIC86_RS23705 (PIC86_23700) | 2544..2822 | + | 279 | WP_013009346.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| PIC86_RS23710 (PIC86_23705) | 3018..3314 | - | 297 | WP_001419651.1 | hypothetical protein | - |
| PIC86_RS23715 (PIC86_23710) | 3659..4246 | + | 588 | WP_001418189.1 | serine acetyltransferase | - |
| PIC86_RS23720 (PIC86_23715) | 4528..5121 | - | 594 | WP_001401779.1 | ProQ/FINO family protein | - |
| PIC86_RS23725 (PIC86_23720) | 5475..6821 | + | 1347 | WP_001132021.1 | protein YagA | - |
| PIC86_RS23730 (PIC86_23725) | 7153..7857 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PIC86_RS23735 (PIC86_23730) | 8160..8462 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| PIC86_RS23740 (PIC86_23735) | 8459..9085 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| PIC86_RS23745 (PIC86_23740) | 9289..10560 | - | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| PIC86_RS23750 (PIC86_23745) | 10560..10997 | - | 438 | WP_000109062.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PIC86_RS23755 (PIC86_23750) | 10994..11242 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PIC86_RS23760 (PIC86_23755) | 11661..12563 | + | 903 | WP_064670763.1 | DUF1281 domain-containing protein | - |
| PIC86_RS23765 (PIC86_23760) | 12567..12872 | + | 306 | WP_013307862.1 | hypothetical protein | - |
| PIC86_RS23770 (PIC86_23765) | 12948..13631 | + | 684 | WP_001401756.1 | DNA methylase | - |
| PIC86_RS23775 (PIC86_23770) | 13632..13853 | + | 222 | WP_001104871.1 | hypothetical protein | - |
| PIC86_RS23780 (PIC86_23775) | 13747..14301 | + | 555 | WP_077635412.1 | DUF1380 family protein | - |
| PIC86_RS23785 (PIC86_23780) | 14346..15121 | + | 776 | Protein_19 | hypothetical protein | - |
| PIC86_RS23790 (PIC86_23785) | 15536..15961 | + | 426 | WP_001198874.1 | antirestriction protein | - |
| PIC86_RS23795 (PIC86_23790) | 16008..16430 | + | 423 | WP_013307864.1 | DUF1380 family protein | - |
| PIC86_RS23800 (PIC86_23795) | 16427..16618 | + | 192 | WP_001703906.1 | hypothetical protein | - |
| PIC86_RS23805 (PIC86_23800) | 16951..17019 | - | 69 | Protein_23 | pilus protein | - |
| PIC86_RS23810 (PIC86_23805) | 17388..17915 | + | 528 | WP_001760699.1 | single-stranded DNA-binding protein | - |
| PIC86_RS23815 (PIC86_23810) | 17973..18206 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| PIC86_RS23820 (PIC86_23815) | 18265..20223 | + | 1959 | WP_064670764.1 | ParB/RepB/Spo0J family partition protein | - |
| PIC86_RS23825 (PIC86_23820) | 20278..20712 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| PIC86_RS23830 (PIC86_23825) | 20709..21428 | + | 720 | WP_001276268.1 | plasmid SOS inhibition protein A | - |
| PIC86_RS23835 (PIC86_23830) | 21425..22021 | + | 597 | WP_001401763.1 | hypothetical protein | - |
| PIC86_RS23840 (PIC86_23835) | 22483..22983 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| PIC86_RS23845 (PIC86_23840) | 23716..24150 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| PIC86_RS23850 (PIC86_23845) | 24243..24509 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| PIC86_RS23855 (PIC86_23850) | 24686..25075 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| PIC86_RS23860 (PIC86_23855) | 25072..25962 | + | 891 | WP_000038343.1 | Recombination-promoting nuclease RpnA | VF |
| PIC86_RS23865 (PIC86_23860) | 25962..26207 | + | 246 | WP_001260882.1 | hypothetical protein | - |
| PIC86_RS23870 (PIC86_23865) | 26238..26489 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| PIC86_RS23875 (PIC86_23870) | 27069..27917 | + | 849 | WP_013307867.1 | DUF4942 domain-containing protein | - |
| PIC86_RS23880 (PIC86_23875) | 28003..28338 | - | 336 | WP_000157090.1 | hypothetical protein | - |
| PIC86_RS23885 (PIC86_23880) | 28571..28903 | + | 333 | WP_001291057.1 | plasmid mobilization protein MobA | - |
| PIC86_RS23890 (PIC86_23885) | 28915..31635 | + | 2721 | WP_000991405.1 | Protein TraI | Relaxase |
| PIC86_RS23895 (PIC86_23890) | 31856..34156 | - | 2301 | WP_013307869.1 | F-type conjugative transfer protein TrbC | - |
| PIC86_RS23900 (PIC86_23895) | 34137..35261 | - | 1125 | WP_000152382.1 | DsbC family protein | - |
| PIC86_RS23905 (PIC86_23900) | 35258..36547 | - | 1290 | WP_271292794.1 | IncI1-type conjugal transfer protein TrbA | - |
| PIC86_RS23910 | 37344..37439 | + | 96 | WP_001363141.1 | DinQ-like type I toxin DqlB | - |
| PIC86_RS23915 (PIC86_23910) | 37502..37678 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| PIC86_RS23920 (PIC86_23915) | 37828..38295 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| PIC86_RS23925 (PIC86_23920) | 38454..39077 | + | 624 | WP_001155247.1 | helix-turn-helix domain-containing protein | - |
| PIC86_RS23930 (PIC86_23925) | 39275..39490 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| PIC86_RS23935 (PIC86_23930) | 39494..39862 | - | 369 | WP_001345852.1 | hypothetical protein | - |
| PIC86_RS23940 (PIC86_23935) | 40153..40395 | - | 243 | WP_000650923.1 | hypothetical protein | - |
| PIC86_RS23945 (PIC86_23940) | 40725..40877 | + | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| PIC86_RS23950 (PIC86_23945) | 41015..42601 | - | 1587 | WP_000004564.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| PIC86_RS23955 (PIC86_23950) | 42875..43528 | - | 654 | WP_001401768.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PIC86_RS23960 (PIC86_23955) | 43616..45781 | - | 2166 | WP_000691808.1 | DotA/TraY family protein | - |
| PIC86_RS23965 (PIC86_23960) | 45856..46425 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| PIC86_RS23970 (PIC86_23965) | 46422..47627 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| PIC86_RS23975 (PIC86_23970) | 47585..48205 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| PIC86_RS23980 (PIC86_23975) | 48205..51249 | - | 3045 | WP_013307872.1 | conjugal transfer nucleotide-binding protein | - |
| PIC86_RS23985 (PIC86_23980) | 51544..52362 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| PIC86_RS23990 (PIC86_23985) | 52277..52528 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| PIC86_RS23995 (PIC86_23990) | 52585..52983 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| PIC86_RS24000 (PIC86_23995) | 53030..53560 | - | 531 | WP_000987023.1 | conjugal transfer protein TraQ | - |
| PIC86_RS24005 (PIC86_24000) | 53557..54270 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| PIC86_RS24010 (PIC86_24005) | 54267..55604 | - | 1338 | WP_013307873.1 | conjugal transfer protein TraO | - |
| PIC86_RS24015 (PIC86_24010) | 55608..56582 | - | 975 | WP_000547383.1 | hypothetical protein | VF |
| PIC86_RS24020 (PIC86_24015) | 56593..57288 | - | 696 | WP_001681668.1 | DotI/IcmL family type IV secretion protein | - |
| PIC86_RS24025 (PIC86_24020) | 57300..57650 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| PIC86_RS24030 (PIC86_24025) | 57667..61728 | - | 4062 | WP_013307874.1 | DUF5710 domain-containing protein | - |
| PIC86_RS24035 (PIC86_24030) | 62082..62663 | - | 582 | WP_025750394.1 | hypothetical protein | - |
| PIC86_RS24040 (PIC86_24035) | 62671..63126 | - | 456 | Protein_70 | IS5 family transposase | - |
| PIC86_RS24045 (PIC86_24040) | 63161..64036 | - | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| PIC86_RS24050 (PIC86_24045) | 64286..65548 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PIC86_RS24055 (PIC86_24050) | 65960..66250 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| PIC86_RS24060 (PIC86_24055) | 66247..67395 | - | 1149 | WP_013307876.1 | putative protein YggR | VF |
| PIC86_RS24065 (PIC86_24060) | 67379..68215 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| PIC86_RS24070 (PIC86_24065) | 68212..68670 | - | 459 | WP_025750398.1 | DotD/TraH family lipoprotein | - |
| PIC86_RS24075 (PIC86_24070) | 68774..69976 | - | 1203 | WP_013307879.1 | conjugal transfer protein TraF | - |
| PIC86_RS24080 (PIC86_24075) | 70078..70899 | - | 822 | WP_001681675.1 | hypothetical protein | - |
| PIC86_RS24085 (PIC86_24080) | 71112..72236 | - | 1125 | WP_013307880.1 | site-specific integrase | - |
| PIC86_RS24090 (PIC86_24085) | 72286..72594 | + | 309 | WP_102166912.1 | pilus assembly protein | - |
| PIC86_RS24095 (PIC86_24090) | 73292..73561 | + | 270 | WP_271292793.1 | hypothetical protein | - |
| PIC86_RS24105 (PIC86_24100) | 74509..75870 | - | 1362 | WP_021532399.1 | hypothetical protein | VF |
| PIC86_RS24110 (PIC86_24105) | 75888..76514 | - | 627 | WP_013307883.1 | prepilin peptidase | - |
| PIC86_RS24115 (PIC86_24110) | 76530..77015 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
| PIC86_RS24120 (PIC86_24115) | 77060..77596 | - | 537 | WP_000111521.1 | hypothetical protein | VF |
| PIC86_RS24125 (PIC86_24120) | 77658..78752 | - | 1095 | WP_000697154.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| PIC86_RS24130 (PIC86_24125) | 78754..80262 | - | 1509 | WP_000880806.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| PIC86_RS24135 (PIC86_24130) | 80365..80823 | - | 459 | WP_000095887.1 | hypothetical protein | VF |
| PIC86_RS24140 (PIC86_24135) | 80813..82108 | - | 1296 | WP_000129883.1 | type 4b pilus protein PilO2 | - |
| PIC86_RS24145 (PIC86_24140) | 82129..83748 | - | 1620 | WP_001035562.1 | Outer membrane lipoprotein BfpB | VF |
| PIC86_RS24150 (PIC86_24145) | 83780..84217 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| PIC86_RS24155 (PIC86_24150) | 84221..85291 | - | 1071 | WP_000730430.1 | hypothetical protein | VF |
| PIC86_RS24160 (PIC86_24155) | 85532..85852 | - | 321 | WP_001447108.1 | hypothetical protein | - |
| PIC86_RS24165 (PIC86_24160) | 85968..86210 | - | 243 | WP_021515452.1 | PilI type IV pilus biogenesis protein | - |
| PIC86_RS24170 (PIC86_24165) | 86291..86434 | - | 144 | WP_000176500.1 | hypothetical protein | - |
| PIC86_RS24175 (PIC86_24170) | 86701..87363 | - | 663 | WP_005082527.1 | hypothetical protein | - |
| PIC86_RS24180 (PIC86_24175) | 87503..88009 | - | 507 | WP_005082529.1 | transcription termination/antitermination NusG family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|