MGE detailed information
MGE type: Prophage MGE length: 51332 bp
Accession: NZ_CP116152 Location: 3569324..3620655 Organism: Escherichia coli strain DETEC-P61 Replicon: chromosome
Accession: NZ_CP116152 Location: 3569324..3620655 Organism: Escherichia coli strain DETEC-P61 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC71_RS17615 (3565856) | 3565856..3566812 | + | 957 | WP_000121346.1 | molybdenum cofactor insertion chaperone PaoD | - |
| PIC71_RS17620 (3566863) | 3566863..3567201 | + | 339 | Protein_3445 | LysR substrate-binding domain-containing protein | - |
| PIC71_RS17625 (3567748) | 3567748..3569115 | - | 1368 | WP_236918395.1 | HNH endonuclease signature motif containing protein | - |
| PIC71_RS17630 (3569324) | 3569324..3569926 | - | 603 | WP_040017496.1 | IS91 family transposase ISMno24 | Transposase |
| PIC71_RS17635 (3570325) | 3570325..3571425 | + | 1101 | WP_074014622.1 | hsdR | - |
| PIC71_RS17640 (3571557) | 3571557..3571634 | - | 78 | Protein_3449 | capsid protein | - |
| PIC71_RS17645 (3571903) | 3571903..3572598 | + | 696 | WP_001514810.1 | DUF4145 domain-containing protein | - |
| PIC71_RS17650 (3572625) | 3572625..3573181 | - | 557 | Protein_3451 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| PIC71_RS17655 (3573211) | 3573211..3573771 | + | 561 | WP_271289849.1 | phage tail protein | - |
| PIC71_RS17660 (3573771) | 3573771..3574364 | + | 594 | WP_271289816.1 | tail fiber assembly protein | - |
| PIC71_RS17665 (3574336) | 3574336..3574770 | - | 435 | WP_001752131.1 | tail fiber assembly protein | - |
| PIC71_RS17670 (3575370) | 3575370..3575666 | - | 297 | Protein_3455 | protein StfP | - |
| PIC71_RS17675 (3575670) | 3575670..3576254 | - | 585 | WP_000383549.1 | YmfQ family protein | - |
| PIC71_RS17680 (3576245) | 3576245..3577303 | - | 1059 | WP_267843427.1 | baseplate J/gp47 family protein | - |
| PIC71_RS17685 (3577290) | 3577290..3577715 | - | 426 | WP_001568582.1 | phage GP46 family protein | - |
| PIC71_RS17690 (3577715) | 3577715..3578263 | - | 549 | WP_271289817.1 | phage baseplate assembly protein V | - |
| PIC71_RS17695 (3578263) | 3578263..3579342 | - | 1080 | WP_000999511.1 | baseplate protein | - |
| PIC71_RS17700 (3579339) | 3579339..3580712 | - | 1374 | WP_271289818.1 | DNA circularization N-terminal domain-containing protein | - |
| PIC71_RS17705 (3580769) | 3580769..3581257 | - | 489 | WP_000738065.1 | hypothetical protein | - |
| PIC71_RS17710 (3581322) | 3581322..3583223 | - | 1902 | WP_000774665.1 | phage tail tape measure protein | - |
| PIC71_RS17715 (3583308) | 3583308..3583631 | - | 324 | WP_000571713.1 | phage tail assembly protein | - |
| PIC71_RS17720 (3583628) | 3583628..3583984 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| PIC71_RS17725 (3583984) | 3583984..3585480 | - | 1497 | WP_000155699.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PIC71_RS17730 (3585464) | 3585464..3585634 | - | 171 | WP_000497757.1 | DUF2635 domain-containing protein | - |
| PIC71_RS17735 (3585643) | 3585643..3586203 | - | 561 | WP_000779283.1 | hypothetical protein | - |
| PIC71_RS17740 (3586200) | 3586200..3586724 | - | 525 | WP_001436634.1 | hypothetical protein | - |
| PIC71_RS17745 (3586696) | 3586696..3587106 | - | 411 | WP_271289819.1 | phage head closure protein | - |
| PIC71_RS17750 (3587103) | 3587103..3587426 | - | 324 | WP_000927711.1 | head-tail connector protein | - |
| PIC71_RS17755 (3587429) | 3587429..3587629 | - | 201 | WP_000601365.1 | hypothetical protein | - |
| PIC71_RS17760 (3587679) | 3587679..3588884 | - | 1206 | WP_001524102.1 | phage major capsid protein | - |
| PIC71_RS17765 (3588899) | 3588899..3589549 | - | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| PIC71_RS17770 (3589527) | 3589527..3590768 | - | 1242 | WP_171882066.1 | phage portal protein | - |
| PIC71_RS17775 (3590768) | 3590768..3590950 | - | 183 | WP_000605606.1 | protein YmfR | - |
| PIC71_RS17780 (3590962) | 3590962..3592695 | - | 1734 | WP_000088179.1 | terminase large subunit | - |
| PIC71_RS17785 (3592692) | 3592692..3593186 | - | 495 | WP_000929175.1 | phage terminase small subunit P27 family | - |
| PIC71_RS17790 (3593312) | 3593312..3593662 | - | 351 | WP_032172868.1 | HNH endonuclease signature motif containing protein | - |
| PIC71_RS17795 (3593689) | 3593689..3593868 | - | 180 | WP_065312312.1 | rz1 lytic protein | - |
| PIC71_RS17800 (3593846) | 3593846..3594238 | - | 393 | WP_024249233.1 | DUF2570 domain-containing protein | - |
| PIC71_RS17805 (3594222) | 3594222..3594698 | - | 477 | WP_016244989.1 | glycoside hydrolase family protein | - |
| PIC71_RS17810 (3594702) | 3594702..3595037 | - | 336 | WP_001120502.1 | phage holin, lambda family | - |
| PIC71_RS17815 (3595114) | 3595114..3596166 | - | 1053 | WP_032279276.1 | site-specific DNA-methyltransferase | - |
| PIC71_RS17820 (3596317) | 3596317..3596520 | - | 204 | WP_000917724.1 | hypothetical protein | - |
| PIC71_RS17825 (3596840) | 3596840..3597859 | + | 1020 | WP_000357056.1 | hypothetical protein | - |
| PIC71_RS17830 (3597874) | 3597874..3598254 | - | 381 | WP_080086273.1 | antiterminator Q family protein | - |
| PIC71_RS17835 (3598269) | 3598269..3599258 | - | 990 | WP_027661773.1 | DUF968 domain-containing protein | - |
| PIC71_RS17840 (3599266) | 3599266..3600075 | - | 810 | WP_271289820.1 | KilA-N domain-containing protein | - |
| PIC71_RS17845 (3600095) | 3600095..3600484 | - | 390 | WP_000767103.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PIC71_RS17850 (3600481) | 3600481..3600807 | - | 327 | WP_000210170.1 | LexA family transcriptional regulator | - |
| PIC71_RS17855 (3600804) | 3600804..3601457 | - | 654 | WP_046660195.1 | phage N-6-adenine-methyltransferase | - |
| PIC71_RS17860 (3601472) | 3601472..3601555 | - | 84 | Protein_3493 | hypothetical protein | - |
| PIC71_RS17865 (3601552) | 3601552..3602508 | - | 957 | WP_271289821.1 | helix-turn-helix domain-containing protein | - |
| PIC71_RS17870 (3602498) | 3602498..3602677 | - | 180 | WP_174593502.1 | DUF4222 domain-containing protein | - |
| PIC71_RS17875 (3602853) | 3602853..3603404 | - | 552 | WP_271289822.1 | protein YmfL | - |
| PIC71_RS17880 (3603427) | 3603427..3603675 | - | 249 | WP_000187185.1 | YdaS family helix-turn-helix protein | - |
| PIC71_RS17885 (3603811) | 3603811..3604497 | + | 687 | WP_028126009.1 | helix-turn-helix transcriptional regulator | - |
| PIC71_RS17890 (3604480) | 3604480..3605370 | - | 891 | WP_000389078.1 | BRCT domain-containing protein | - |
| PIC71_RS17895 (3605573) | 3605573..3605776 | + | 204 | WP_001083098.1 | ClpX C4-type zinc finger protein | - |
| PIC71_RS17900 (3605785) | 3605785..3606060 | + | 276 | WP_001514782.1 | hypothetical protein | - |
| PIC71_RS17905 (3606336) | 3606336..3606655 | + | 320 | Protein_3502 | hypothetical protein | - |
| PIC71_RS17910 (3606737) | 3606737..3607273 | + | 537 | WP_001730405.1 | 5'-deoxynucleotidase | - |
| PIC71_RS17915 (3607264) | 3607264..3607626 | + | 363 | WP_001242749.1 | phage protein | - |
| PIC71_RS17920 (3607626) | 3607626..3607931 | + | 306 | WP_000206732.1 | protein YfdT | - |
| PIC71_RS17925 (3607931) | 3607931..3608281 | + | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| PIC71_RS17930 (3608203) | 3608203..3609321 | + | 1119 | WP_001132557.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| PIC71_RS17940 (3609526) | 3609526..3610779 | - | 1254 | WP_063120858.1 | glutamate-5-semialdehyde dehydrogenase | - |
| PIC71_RS17945 (3610791) | 3610791..3611894 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| PIC71_RS17950 (3612182) | 3612182..3613237 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| PIC71_RS17955 (3613276) | 3613276..3613677 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3614395) | 3614395..3614475 | - | 81 | NuclAT_11 | - | - |
| - (3614395) | 3614395..3614475 | - | 81 | NuclAT_11 | - | - |
| - (3614395) | 3614395..3614475 | - | 81 | NuclAT_11 | - | - |
| - (3614395) | 3614395..3614475 | - | 81 | NuclAT_11 | - | - |
| PIC71_RS17960 (3613735) | 3613735..3614979 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| PIC71_RS17965 (3615071) | 3615071..3615529 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| PIC71_RS17970 (3615790) | 3615790..3617247 | + | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
| PIC71_RS17975 (3617304) | 3617304..3617825 | - | 522 | Protein_3515 | peptide chain release factor H | - |
| PIC71_RS17980 (3617824) | 3617824..3618018 | - | 195 | Protein_3516 | RtcB family protein | - |
| PIC71_RS17985 (3618068) | 3618068..3618765 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| PIC71_RS17990 (3618782) | 3618782..3618844 | - | 63 | Protein_3518 | GNAT family N-acetyltransferase | - |
| PIC71_RS17995 (3618854) | 3618854..3619252 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| PIC71_RS18000 (3619255) | 3619255..3619548 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| PIC71_RS18005 (3619600) | 3619600..3620655 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| PIC71_RS18010 (3620726) | 3620726..3621649 | - | 924 | WP_001468020.1 | putative lateral flagellar export/assembly protein LafU | - |
| PIC71_RS18015 (3621652) | 3621652..3622515 | - | 864 | WP_001169518.1 | flagellar motor stator protein MotA | - |
| PIC71_RS18020 (3622528) | 3622528..3623247 | - | 720 | WP_000938740.1 | FliA/WhiG family RNA polymerase sigma factor | - |
| PIC71_RS18025 (3623267) | 3623267..3623734 | - | 468 | WP_000725257.1 | flagellar basal body-associated FliL family protein | - |
| PIC71_RS18030 (3623742) | 3623742..3624803 | - | 1062 | WP_097479661.1 | flagellar hook-length control protein FliK | - |
| PIC71_RS18035 (3624800) | 3624800..3625111 | - | 312 | WP_000414994.1 | hypothetical protein | - |
| PIC71_RS18040 (3625116) | 3625116..3625508 | - | 393 | WP_000285319.1 | flagellar export chaperone FliS | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|