MGE detailed information
MGE type: Conjugative plasmid MGE length: 82763 bp
Accession: NZ_CP116147 Location: 1..82763 Organism: Escherichia coli strain DETEC-P622 Replicon: plasmid pDETEC60
Accession: NZ_CP116147 Location: 1..82763 Organism: Escherichia coli strain DETEC-P622 Replicon: plasmid pDETEC60
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB88_RS25365 (101) | 101..349 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
| PIB88_RS25370 (594) | 594..668 | + | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| PIB88_RS25375 (661) | 661..1518 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| PIB88_RS25380 (2457) | 2457..2918 | + | 462 | WP_072643484.1 | histidine phosphatase family protein | - |
| PIB88_RS25385 (3074) | 3074..4273 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| PIB88_RS25390 (4283) | 4283..4471 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| PIB88_RS25395 (4600) | 4600..6222 | + | 1623 | WP_271287831.1 | P-loop NTPase fold protein | - |
| PIB88_RS25400 (6272) | 6272..7171 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| PIB88_RS25405 (7161) | 7161..7451 | - | 291 | WP_000111771.1 | hypothetical protein | - |
| PIB88_RS25410 (7747) | 7747..7977 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PIB88_RS25415 (7974) | 7974..8390 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PIB88_RS25420 (8552) | 8552..10690 | - | 2139 | WP_000350638.1 | AAA family ATPase | - |
| PIB88_RS25425 (11044) | 11044..11301 | + | 258 | WP_000343085.1 | hypothetical protein | - |
| PIB88_RS25430 (11301) | 11301..11891 | + | 591 | WP_000194575.1 | hypothetical protein | - |
| PIB88_RS25435 (12154) | 12154..13710 | + | 1557 | WP_000818556.1 | AAA family ATPase | - |
| PIB88_RS25440 (13902) | 13902..14519 | + | 618 | WP_000521603.1 | ProQ/FINO family protein | - |
| PIB88_RS25445 (14812) | 14812..15849 | - | 1038 | WP_044502555.1 | permease | - |
| PIB88_RS25450 (15954) | 15954..16277 | + | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| PIB88_RS25455 (16476) | 16476..17180 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS25460 (17186) | 17186..17914 | + | 729 | WP_152921961.1 | replication initiation protein | - |
| PIB88_RS25465 (18452) | 18452..19156 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS25470 (19282) | 19282..20037 | - | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| PIB88_RS25475 (20207) | 20207..21067 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| PIB88_RS25480 (21250) | 21250..21807 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| PIB88_RS25485 (22112) | 22112..22222 | - | 111 | Protein_24 | IS6 family transposase | - |
| PIB88_RS25490 (22288) | 22288..22992 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS25495 (23044) | 23044..23769 | + | 726 | Protein_26 | Beta-lactamase TEM | ARG |
| PIB88_RS25500 (24028) | 24028..24504 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| PIB88_RS25505 (24551) | 24551..25426 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| PIB88_RS25510 (25848) | 25848..26552 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PIB88_RS25515 (26618) | 26618..26683 | + | 66 | Protein_30 | IS1 family transposase | - |
| PIB88_RS25520 (28132) | 28132..28366 | + | 235 | Protein_31 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PIB88_RS25525 (28494) | 28494..28697 | + | 204 | Protein_32 | hypothetical protein | - |
| PIB88_RS25530 (28898) | 28898..29248 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| PIB88_RS25535 (29251) | 29251..30213 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| PIB88_RS25540 (30360) | 30360..30653 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| PIB88_RS25545 (30730) | 30730..31413 | + | 684 | WP_000085883.1 | DNA methylase | - |
| PIB88_RS25550 (31414) | 31414..31635 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| PIB88_RS25555 (31649) | 31649..32083 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| PIB88_RS25560 (32134) | 32134..32910 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| PIB88_RS25565 (33328) | 33328..33753 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| PIB88_RS25570 (33800) | 33800..34222 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| PIB88_RS25575 (34219) | 34219..34410 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| PIB88_RS25580 (35448) | 35448..35678 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| PIB88_RS25585 (35730) | 35730..37091 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| PIB88_RS25590 (37138) | 37138..37701 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| PIB88_RS25595 (37787) | 37787..38248 | - | 462 | Protein_46 | hypothetical protein | - |
| PIB88_RS25600 (38550) | 38550..39077 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| PIB88_RS25605 (39135) | 39135..39368 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| PIB88_RS25610 (39429) | 39429..41452 | + | 2024 | Protein_49 | ParB/RepB/Spo0J family partition protein | - |
| PIB88_RS25615 (41521) | 41521..41955 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| PIB88_RS25620 (41952) | 41952..42714 | + | 763 | Protein_51 | plasmid SOS inhibition protein A | - |
| PIB88_RS25625 (42692) | 42692..42871 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - (42683) | 42683..42907 | + | 225 | NuclAT_0 | - | - |
| - (42683) | 42683..42907 | + | 225 | NuclAT_0 | - | - |
| - (42683) | 42683..42907 | + | 225 | NuclAT_0 | - | - |
| - (42683) | 42683..42907 | + | 225 | NuclAT_0 | - | - |
| PIB88_RS25630 (42893) | 42893..43042 | + | 150 | Protein_53 | plasmid maintenance protein Mok | - |
| PIB88_RS25635 (42984) | 42984..43109 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| PIB88_RS25640 (43428) | 43428..43724 | - | 297 | Protein_55 | hypothetical protein | - |
| PIB88_RS25645 (44024) | 44024..44320 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| PIB88_RS25650 (44431) | 44431..45252 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| PIB88_RS25655 (45549) | 45549..46196 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| PIB88_RS25660 (46473) | 46473..46856 | + | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PIB88_RS25665 (47047) | 47047..47733 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| PIB88_RS25670 (47827) | 47827..48054 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| PIB88_RS25675 (48088) | 48088..48453 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| PIB88_RS25680 (48468) | 48468..48779 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| PIB88_RS25685 (48801) | 48801..49367 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| PIB88_RS25690 (49354) | 49354..50082 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| PIB88_RS25695 (50082) | 50082..51509 | + | 1428 | WP_032297072.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PIB88_RS25700 (51499) | 51499..52089 | + | 591 | WP_000002778.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PIB88_RS25705 (52076) | 52076..52273 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| PIB88_RS25710 (52285) | 52285..52536 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| PIB88_RS25715 (52533) | 52533..53048 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PIB88_RS25720 (53183) | 53183..53404 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| PIB88_RS25725 (53564) | 53564..56191 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| PIB88_RS25730 (56188) | 56188..56574 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| PIB88_RS25735 (56571) | 56571..57203 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| PIB88_RS25740 (57200) | 57200..58192 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| PIB88_RS25745 (58219) | 58219..58527 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| PIB88_RS25750 (58590) | 58590..59111 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| PIB88_RS25755 (59138) | 59138..59776 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PIB88_RS25760 (59773) | 59773..60144 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| PIB88_RS25765 (60170) | 60170..60592 | + | 423 | WP_001229309.1 | HNH endonuclease signature motif containing protein | - |
| PIB88_RS25770 (60589) | 60589..62439 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PIB88_RS25775 (62466) | 62466..62723 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| PIB88_RS25780 (62716) | 62716..63459 | + | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PIB88_RS25785 (63620) | 63620..63856 | + | 237 | WP_000270010.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| PIB88_RS25790 (63843) | 63843..64388 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PIB88_RS25795 (64378) | 64378..64692 | + | 315 | WP_001384255.1 | P-type conjugative transfer protein TrbJ | - |
| PIB88_RS25800 (64646) | 64646..65038 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| PIB88_RS25805 (65025) | 65025..66398 | + | 1374 | WP_000944325.1 | conjugal transfer pilus assembly protein TraH | - |
| PIB88_RS25810 (66395) | 66395..69211 | + | 2817 | WP_271287830.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| PIB88_RS25815 (69244) | 69244..69765 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| PIB88_RS25820 (69790) | 69790..70521 | + | 732 | WP_021559024.1 | conjugal transfer complement resistance protein TraT | - |
| PIB88_RS25825 (70724) | 70724..71461 | + | 738 | WP_015059020.1 | hypothetical protein | - |
| PIB88_RS25830 (71512) | 71512..73764 | + | 2253 | WP_061093448.1 | type IV conjugative transfer system coupling protein TraD | - |
| PIB88_RS25835 (73764) | 73764..79034 | + | 5271 | WP_061093447.1 | Multifunctional conjugation protein TraI | Relaxase |
| PIB88_RS25840 (79054) | 79054..79800 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| PIB88_RS25845 (79855) | 79855..80415 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| PIB88_RS25850 (80547) | 80547..80747 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| PIB88_RS25855 (81133) | 81133..81732 | + | 600 | WP_032083981.1 | PIN domain-containing protein | - |
| PIB88_RS25860 (81794) | 81794..82126 | + | 333 | WP_152916585.1 | hypothetical protein | - |
| - (82327) | 82327..82386 | - | 60 | NuclAT_1 | - | - |
| - (82327) | 82327..82386 | - | 60 | NuclAT_1 | - | - |
| - (82327) | 82327..82386 | - | 60 | NuclAT_1 | - | - |
| - (82327) | 82327..82386 | - | 60 | NuclAT_1 | - | - |
| PIB88_RS25865 (82431) | 82431..82580 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|