MGE detailed information
MGE type: Genomic_island MGE length: 66322 bp
Accession: NZ_CP116145 Location: 1779433..1845754 Organism: Escherichia coli strain DETEC-P622 Replicon: chromosome
Accession: NZ_CP116145 Location: 1779433..1845754 Organism: Escherichia coli strain DETEC-P622 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB88_RS08550 (1775106) | 1775106..1775249 | - | 144 | WP_011076574.1 | hypothetical protein | - |
| PIB88_RS08555 (1775499) | 1775499..1779386 | + | 3888 | WP_001034083.1 | serine protease autotransporter toxin Sat | - |
| PIB88_RS08560 (1779658) | 1779658..1779918 | + | 261 | Protein_1677 | IS3 family transposase ISSfl10 | Transposase |
| PIB88_RS08565 (1779900) | 1779900..1779986 | + | 87 | Protein_1678 | IS3 family transposase ISSfl10 | Transposase |
| PIB88_RS08570 (1779983) | 1779983..1781134 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| PIB88_RS08575 (1781147) | 1781147..1782037 | + | 891 | Protein_1680 | IS3 family transposase ISSd1 | Transposase |
| PIB88_RS08580 (1782055) | 1782055..1782504 | + | 450 | WP_225469291.1 | hypothetical protein | - |
| PIB88_RS08585 (1782920) | 1782920..1784452 | + | 1533 | Protein_1682 | IS3 family transposase | - |
| PIB88_RS08590 (1784486) | 1784486..1784995 | - | 510 | Protein_1683 | L-lactate permease | - |
| PIB88_RS08595 (1785015) | 1785015..1785337 | + | 323 | Protein_1684 | transposase | - |
| PIB88_RS08600 (1785915) | 1785915..1786130 | - | 216 | WP_000266542.1 | hypothetical protein | - |
| PIB88_RS08605 (1786134) | 1786134..1786493 | - | 360 | WP_001296382.1 | hypothetical protein | - |
| PIB88_RS08610 (1786784) | 1786784..1787026 | - | 243 | WP_001296383.1 | hypothetical protein | - |
| PIB88_RS08615 (1787511) | 1787511..1787670 | + | 160 | Protein_1688 | transposase domain-containing protein | - |
| PIB88_RS08620 (1787888) | 1787888..1789108 | - | 1221 | Protein_1689 | bifunctional siderophore receptor/adhesin Iha | - |
| PIB88_RS08625 (1789191) | 1789191..1789616 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| PIB88_RS08630 (1789613) | 1789613..1789963 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| PIB88_RS08635 (1789994) | 1789994..1791607 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| PIB88_RS08640 (1791637) | 1791637..1792518 | - | 882 | Protein_1693 | Vitamin B12 transporter BtuB | VF |
| PIB88_RS08650 (1794398) | 1794398..1795387 | - | 990 | WP_000990138.1 | sialate O-acetylesterase | - |
| PIB88_RS08655 (1795484) | 1795484..1796218 | + | 735 | WP_001282578.1 | transcriptional regulator NanR | - |
| PIB88_RS08660 (1796254) | 1796254..1797177 | - | 924 | WP_001030790.1 | alpha/beta hydrolase | - |
| PIB88_RS08665 (1797239) | 1797239..1798348 | - | 1110 | WP_000865295.1 | N-acetylneuraminate epimerase | - |
| PIB88_RS08670 (1798361) | 1798361..1799071 | - | 711 | WP_001296386.1 | oligogalacturonate-specific porin KdgM family protein | - |
| PIB88_RS08675 (1799117) | 1799117..1799947 | - | 831 | WP_000948500.1 | alpha/beta hydrolase | - |
| PIB88_RS08680 (1799951) | 1799951..1801423 | - | 1473 | WP_000376547.1 | MFS transporter | - |
| PIB88_RS08685 (1801472) | 1801472..1802347 | - | 876 | WP_000629094.1 | N-acetylmannosamine kinase | - |
| PIB88_RS08690 (1802381) | 1802381..1803298 | - | 918 | WP_001149834.1 | N-acetylneuraminate lyase | - |
| PIB88_RS08695 (1803416) | 1803416..1803813 | + | 398 | Protein_1704 | transposase domain-containing protein | - |
| PIB88_RS08700 (1803959) | 1803959..1804384 | + | 426 | WP_000435655.1 | IS66 family transposase IS682 | Transposase |
| PIB88_RS08705 (1804381) | 1804381..1804731 | + | 351 | WP_000624646.1 | IS66 family transposase IS682 | Transposase |
| PIB88_RS08710 (1804762) | 1804762..1805859 | + | 1098 | Protein_1707 | IS66 family transposase IS682 | Transposase |
| PIB88_RS08715 (1805859) | 1805859..1807397 | + | 1539 | WP_000998080.1 | IS66 family transposase ISEc8 | Transposase |
| PIB88_RS08720 (1807436) | 1807436..1807621 | - | 186 | Protein_1709 | putative zinc ribbon protein | - |
| PIB88_RS08725 (1807618) | 1807618..1808001 | - | 384 | WP_000271011.1 | putative zinc ribbon protein | - |
| PIB88_RS08730 (1808168) | 1808168..1808737 | - | 570 | WP_000221563.1 | inovirus Gp2 family protein | - |
| PIB88_RS08735 (1808936) | 1808936..1809133 | + | 198 | WP_001547002.1 | hypothetical protein | - |
| PIB88_RS08740 (1809466) | 1809466..1809645 | - | 180 | Protein_1713 | hemolysin expression modulator Hha | - |
| PIB88_RS08745 (1810563) | 1810563..1810769 | + | 207 | WP_001095916.1 | AlpA family transcriptional regulator | - |
| PIB88_RS08750 (1810855) | 1810855..1811427 | + | 573 | WP_001296389.1 | hypothetical protein | - |
| PIB88_RS08755 (1811548) | 1811548..1813038 | - | 1491 | WP_001305029.1 | YfjI family protein | - |
| PIB88_RS08760 (1814370) | 1814370..1815242 | + | 873 | WP_001069668.1 | GTPase family protein | - |
| PIB88_RS08765 (1815576) | 1815576..1818698 | + | 3123 | WP_000820373.1 | autotransporter adhesin Ag43 | - |
| PIB88_RS08770 (1818793) | 1818793..1819920 | + | 1128 | Protein_1719 | hypothetical protein | - |
| PIB88_RS08775 (1819996) | 1819996..1820451 | + | 456 | WP_000581502.1 | IrmA family protein | - |
| PIB88_RS08780 (1820530) | 1820530..1820763 | + | 234 | WP_000902034.1 | DUF905 family protein | - |
| PIB88_RS08785 (1820864) | 1820864..1821682 | + | 819 | WP_001234620.1 | DUF932 domain-containing protein | - |
| PIB88_RS08790 (1821737) | 1821737..1822222 | + | 486 | WP_000849565.1 | antirestriction protein | - |
| PIB88_RS08795 (1822238) | 1822238..1822714 | + | 477 | WP_001186726.1 | RadC family protein | - |
| PIB88_RS08800 (1822777) | 1822777..1822998 | + | 222 | WP_000692329.1 | DUF987 domain-containing protein | - |
| PIB88_RS08805 (1823017) | 1823017..1823661 | + | 645 | WP_000094916.1 | hypothetical protein | - |
| PIB88_RS08810 (1823711) | 1823711..1824079 | + | 369 | WP_001305076.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| PIB88_RS08815 (1824168) | 1824168..1824545 | + | 378 | WP_000854690.1 | TA system toxin CbtA family protein | Toxin Detail |
| PIB88_RS08820 (1824542) | 1824542..1825030 | + | 489 | WP_000761699.1 | DUF5983 family protein | - |
| PIB88_RS08825 (1825047) | 1825047..1825244 | + | 198 | WP_000839293.1 | DUF957 domain-containing protein | - |
| PIB88_RS08830 (1825329) | 1825329..1826174 | + | 846 | WP_001529401.1 | DUF4942 domain-containing protein | - |
| PIB88_RS08835 (1826243) | 1826243..1826638 | + | 396 | WP_000208384.1 | DUF6088 family protein | - |
| PIB88_RS08840 (1826631) | 1826631..1827564 | + | 934 | Protein_1733 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| PIB88_RS08845 (1827981) | 1827981..1828151 | + | 171 | Protein_1734 | IS110 family transposase ISEc32 | Transposase |
| PIB88_RS08850 (1828962) | 1828962..1829945 | + | 984 | WP_001296394.1 | Arabinose 5-phosphate isomerase KpsF | VF |
| PIB88_RS08855 (1830017) | 1830017..1831165 | + | 1149 | WP_000905920.1 | hypothetical protein | VF |
| PIB88_RS08860 (1831189) | 1831189..1832865 | + | 1677 | WP_001305083.1 | Polysialic acid transport protein KpsD | VF |
| PIB88_RS08865 (1832875) | 1832875..1833615 | + | 741 | WP_000030749.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| PIB88_RS08870 (1833612) | 1833612..1835639 | + | 2028 | WP_000579513.1 | hypothetical protein | VF |
| PIB88_RS08875 (1835674) | 1835674..1836843 | + | 1170 | WP_001161856.1 | hypothetical protein | VF |
| PIB88_RS08880 (1837182) | 1837182..1838360 | - | 1179 | WP_001305084.1 | UDP-glucose 6-dehydrogenase | VF |
| PIB88_RS08885 (1838402) | 1838402..1839964 | - | 1563 | WP_001305085.1 | hypothetical protein | VF |
| PIB88_RS08890 (1840125) | 1840125..1841159 | + | 1035 | Protein_1743 | IS481 family transposase | - |
| PIB88_RS08895 (1841256) | 1841256..1842944 | - | 1689 | WP_022645101.1 | hypothetical protein | VF |
| PIB88_RS08900 (1843379) | 1843379..1844095 | - | 717 | WP_000634338.1 | K5 polysaccharide biosynthesis alpha-UDP-GlcNAc glycosyltransferase KfiA | - |
| PIB88_RS08905 (1844546) | 1844546..1844748 | - | 203 | Protein_1746 | transposase | - |
| PIB88_RS08910 (1845080) | 1845080..1845754 | - | 675 | WP_000590243.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| PIB88_RS08915 (1845751) | 1845751..1846527 | - | 777 | WP_000124287.1 | ABC transporter permease | - |
| PIB88_RS08920 (1847585) | 1847585..1848121 | - | 537 | WP_000942771.1 | GspM family type II secretion system protein YghD | - |
| PIB88_RS08925 (1848123) | 1848123..1849301 | - | 1179 | WP_000095005.1 | type II secretion system protein GspL | - |
| PIB88_RS08930 (1849298) | 1849298..1850275 | - | 978 | WP_000633242.1 | type II secretion system minor pseudopilin GspK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|