MGE detailed information
MGE type: Conjugative plasmid MGE length: 86916 bp
Accession: NZ_CP116125 Location: 1..86916 Organism: Escherichia coli strain DETEC-P666 Replicon: plasmid pDETEC33
Accession: NZ_CP116125 Location: 1..86916 Organism: Escherichia coli strain DETEC-P666 Replicon: plasmid pDETEC33
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB57_RS24385 (PIB57_24390) | 495..1367 | + | 873 | WP_000729438.1 | incFII family plasmid replication initiator RepA | - |
| PIB57_RS24390 (PIB57_24395) | 2062..2220 | + | 159 | WP_000829588.1 | hypothetical protein | - |
| PIB57_RS24395 (PIB57_24400) | 2275..2535 | + | 261 | WP_271291420.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| PIB57_RS24400 (PIB57_24405) | 2558..2836 | + | 279 | WP_013009346.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| PIB57_RS24405 (PIB57_24410) | 3032..3328 | - | 297 | WP_001419651.1 | hypothetical protein | - |
| PIB57_RS24410 (PIB57_24415) | 3673..4260 | + | 588 | WP_001418189.1 | serine acetyltransferase | - |
| PIB57_RS24415 (PIB57_24420) | 4542..5135 | - | 594 | WP_001401779.1 | ProQ/FINO family protein | - |
| PIB57_RS24420 (PIB57_24425) | 5489..6835 | + | 1347 | WP_001132021.1 | protein YagA | - |
| PIB57_RS24425 (PIB57_24430) | 7156..7674 | + | 519 | WP_000115885.1 | hypothetical protein | VF |
| PIB57_RS24430 (PIB57_24435) | 7693..8913 | + | 1221 | WP_000343765.1 | ISL3 family transposase ISEc53 | Transposase |
| PIB57_RS24435 (PIB57_24440) | 9271..9573 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| PIB57_RS24440 (PIB57_24445) | 9570..10196 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| PIB57_RS24445 (PIB57_24450) | 10400..11671 | - | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| PIB57_RS24450 (PIB57_24455) | 11671..12108 | - | 438 | WP_000109062.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PIB57_RS24455 (PIB57_24460) | 12105..12353 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PIB57_RS24460 (PIB57_24465) | 12772..13674 | + | 903 | WP_064670763.1 | DUF1281 domain-containing protein | - |
| PIB57_RS24465 (PIB57_24470) | 13678..13983 | + | 306 | WP_013307862.1 | hypothetical protein | - |
| PIB57_RS24470 (PIB57_24475) | 14059..14742 | + | 684 | WP_001401756.1 | DNA methylase | - |
| PIB57_RS24475 (PIB57_24480) | 14743..14964 | + | 222 | WP_001104871.1 | hypothetical protein | - |
| PIB57_RS24480 (PIB57_24485) | 14858..15412 | + | 555 | WP_077635412.1 | DUF1380 family protein | - |
| PIB57_RS24485 (PIB57_24490) | 15457..16232 | + | 776 | Protein_20 | hypothetical protein | - |
| PIB57_RS24490 (PIB57_24495) | 16647..17072 | + | 426 | WP_001198874.1 | antirestriction protein | - |
| PIB57_RS24495 (PIB57_24500) | 17119..17541 | + | 423 | WP_013307864.1 | DUF1380 family protein | - |
| PIB57_RS24500 (PIB57_24505) | 17538..17729 | + | 192 | WP_001415419.1 | hypothetical protein | - |
| PIB57_RS24505 (PIB57_24510) | 17800..18114 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| PIB57_RS24510 (PIB57_24515) | 18498..19025 | + | 528 | WP_251702341.1 | single-stranded DNA-binding protein | - |
| PIB57_RS24515 (PIB57_24520) | 19083..19316 | + | 234 | WP_000006016.1 | DUF905 domain-containing protein | - |
| PIB57_RS24520 (PIB57_24525) | 19375..21333 | + | 1959 | WP_001145482.1 | ParB/RepB/Spo0J family partition protein | - |
| PIB57_RS24525 (PIB57_24530) | 21388..21822 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| PIB57_RS24530 (PIB57_24535) | 21819..22538 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| PIB57_RS24535 (PIB57_24540) | 22535..23131 | + | 597 | WP_047666702.1 | hypothetical protein | - |
| PIB57_RS24540 (PIB57_24545) | 23593..24093 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| PIB57_RS24545 (PIB57_24550) | 24826..25260 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| PIB57_RS24550 (PIB57_24555) | 25353..25619 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| PIB57_RS24555 (PIB57_24560) | 25796..26185 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| PIB57_RS24560 (PIB57_24565) | 26182..27072 | + | 891 | WP_000038343.1 | ISNCY family transposase ISSen7 | VF |
| PIB57_RS24565 (PIB57_24570) | 27072..27317 | + | 246 | WP_001260882.1 | hypothetical protein | - |
| PIB57_RS24570 (PIB57_24575) | 27348..27599 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| PIB57_RS24575 (PIB57_24580) | 28179..29027 | + | 849 | WP_013307867.1 | DUF4942 domain-containing protein | - |
| PIB57_RS24580 (PIB57_24585) | 29113..29448 | - | 336 | WP_000157090.1 | hypothetical protein | - |
| PIB57_RS24585 (PIB57_24590) | 29681..30013 | + | 333 | WP_001291057.1 | plasmid mobilization protein MobA | - |
| PIB57_RS24590 (PIB57_24595) | 30025..32745 | + | 2721 | WP_000991405.1 | hypothetical protein | Relaxase |
| PIB57_RS24595 (PIB57_24600) | 32966..35266 | - | 2301 | WP_013307869.1 | F-type conjugative transfer protein TrbC | - |
| PIB57_RS24600 (PIB57_24605) | 35247..36371 | - | 1125 | WP_000152382.1 | DsbC family protein | - |
| PIB57_RS24605 (PIB57_24610) | 36368..37720 | - | 1353 | WP_180482026.1 | conjugal transfer protein TrbA | - |
| PIB57_RS24610 | 38517..38612 | + | 96 | WP_001363141.1 | DinQ-like type I toxin DqlB | - |
| PIB57_RS24615 (PIB57_24620) | 38675..38851 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| PIB57_RS24620 (PIB57_24625) | 39001..39468 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| PIB57_RS24625 (PIB57_24630) | 39627..40250 | + | 624 | WP_001155247.1 | helix-turn-helix domain-containing protein | - |
| PIB57_RS24630 (PIB57_24635) | 40448..40663 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| PIB57_RS24635 (PIB57_24640) | 40667..41035 | - | 369 | WP_001345852.1 | hypothetical protein | - |
| PIB57_RS24640 (PIB57_24645) | 41326..41568 | - | 243 | WP_000650923.1 | hypothetical protein | - |
| PIB57_RS24645 (PIB57_24650) | 41898..42050 | + | 153 | WP_001335079.1 | Hok/Gef family protein | - |
| PIB57_RS24650 (PIB57_24655) | 42188..43774 | - | 1587 | WP_000004564.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| PIB57_RS24655 (PIB57_24660) | 44048..44695 | - | 648 | WP_015056434.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PIB57_RS24660 (PIB57_24665) | 44783..46942 | - | 2160 | WP_000691811.1 | DotA/TraY family protein | - |
| PIB57_RS24665 (PIB57_24670) | 47017..47586 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| PIB57_RS24670 (PIB57_24675) | 47583..48788 | - | 1206 | WP_271291418.1 | conjugal transfer protein TraW | - |
| PIB57_RS24675 (PIB57_24680) | 48746..49366 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| PIB57_RS24680 (PIB57_24685) | 49366..52410 | - | 3045 | WP_001024766.1 | conjugal transfer protein | - |
| PIB57_RS24685 (PIB57_24690) | 52635..53180 | + | 546 | WP_001390888.1 | hypothetical protein | - |
| PIB57_RS24690 (PIB57_24695) | 53153..53536 | - | 384 | WP_224670268.1 | hypothetical protein | - |
| PIB57_RS24695 (PIB57_24700) | 53533..53892 | - | 360 | WP_000380400.1 | hypothetical protein | - |
| PIB57_RS24700 (PIB57_24705) | 53947..54765 | - | 819 | WP_072107751.1 | conjugal transfer protein TraT | - |
| PIB57_RS24705 (PIB57_24710) | 54680..54931 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| PIB57_RS24710 (PIB57_24715) | 54988..55386 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| PIB57_RS24715 (PIB57_24720) | 55433..55963 | - | 531 | WP_000987023.1 | conjugal transfer protein TraQ | - |
| PIB57_RS24720 (PIB57_24725) | 55960..56673 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| PIB57_RS24725 (PIB57_24730) | 56670..58007 | - | 1338 | WP_013307873.1 | conjugal transfer protein TraO | - |
| PIB57_RS24730 (PIB57_24735) | 58011..58985 | - | 975 | WP_000547383.1 | hypothetical protein | VF |
| PIB57_RS24735 (PIB57_24740) | 58996..59691 | - | 696 | WP_001681668.1 | DotI/IcmL family type IV secretion protein | - |
| PIB57_RS24740 (PIB57_24745) | 59703..60053 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| PIB57_RS24745 (PIB57_24750) | 60070..64131 | - | 4062 | WP_013307874.1 | DUF5710 domain-containing protein | - |
| PIB57_RS24750 (PIB57_24755) | 64485..65066 | - | 582 | WP_025750394.1 | hypothetical protein | - |
| PIB57_RS24755 (PIB57_24760) | 65298..65588 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| PIB57_RS24760 (PIB57_24765) | 65585..66733 | - | 1149 | WP_271291419.1 | hypothetical protein | VF |
| PIB57_RS24765 (PIB57_24770) | 66717..67553 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| PIB57_RS24770 (PIB57_24775) | 67550..68008 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| PIB57_RS24775 (PIB57_24780) | 68112..69314 | - | 1203 | WP_013307879.1 | conjugal transfer protein TraF | - |
| PIB57_RS24780 (PIB57_24785) | 69416..70237 | - | 822 | WP_001681675.1 | hypothetical protein | - |
| PIB57_RS24785 (PIB57_24790) | 70450..71574 | - | 1125 | WP_013307880.1 | site-specific integrase | - |
| PIB57_RS24790 (PIB57_24795) | 71629..71868 | + | 240 | WP_224671100.1 | pilus assembly protein PilV | - |
| PIB57_RS24795 (PIB57_24800) | 72827..73066 | + | 240 | WP_000271302.1 | hypothetical protein | - |
| PIB57_RS24800 (PIB57_24805) | 73071..74432 | - | 1362 | WP_021532399.1 | hypothetical protein | VF |
| PIB57_RS24805 (PIB57_24810) | 74450..75076 | - | 627 | WP_013307883.1 | prepilin peptidase | - |
| PIB57_RS24810 (PIB57_24815) | 75092..75577 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
| PIB57_RS24815 (PIB57_24820) | 75622..76158 | - | 537 | WP_000111521.1 | hypothetical protein | VF |
| PIB57_RS24820 (PIB57_24825) | 76220..77314 | - | 1095 | WP_000697154.1 | hypothetical protein | VF |
| PIB57_RS24825 (PIB57_24830) | 77316..78824 | - | 1509 | WP_000880806.1 | hypothetical protein | VF |
| PIB57_RS24830 (PIB57_24835) | 78927..79385 | - | 459 | WP_000095887.1 | hypothetical protein | VF |
| PIB57_RS24835 (PIB57_24840) | 79375..80670 | - | 1296 | WP_000129885.1 | type 4b pilus protein PilO2 | - |
| PIB57_RS24840 (PIB57_24845) | 80691..82310 | - | 1620 | WP_001035562.1 | Outer membrane lipoprotein BfpB | VF |
| PIB57_RS24845 (PIB57_24850) | 82342..82779 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| PIB57_RS24850 (PIB57_24855) | 82783..83853 | - | 1071 | WP_000730430.1 | hypothetical protein | VF |
| PIB57_RS24855 (PIB57_24860) | 84080..84415 | - | 336 | WP_001335624.1 | hypothetical protein | - |
| PIB57_RS24860 (PIB57_24865) | 84532..84774 | - | 243 | WP_001271734.1 | PilI type IV pilus biogenesis protein | - |
| PIB57_RS24865 (PIB57_24870) | 84855..84998 | - | 144 | WP_072105535.1 | hypothetical protein | - |
| PIB57_RS24870 (PIB57_24875) | 85265..85927 | - | 663 | WP_005082527.1 | hypothetical protein | - |
| PIB57_RS24875 (PIB57_24880) | 86067..86573 | - | 507 | WP_005082529.1 | transcription termination/antitermination NusG family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|