MGE detailed information
MGE type: Conjugative plasmid MGE length: 118716 bp
Accession: NZ_CP116112 Location: 1..118716 Organism: Escherichia coli strain DETEC-P80 Replicon: plasmid pDETEC20
Accession: NZ_CP116112 Location: 1..118716 Organism: Escherichia coli strain DETEC-P80 Replicon: plasmid pDETEC20
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC84_RS23810 (455) | 455..1486 | + | 1032 | WP_000907866.1 | plasmid replication initiator RepA | - |
| PIC84_RS23815 (2184) | 2184..2399 | + | 216 | WP_000841013.1 | hypothetical protein | - |
| PIC84_RS23820 (2396) | 2396..3388 | + | 993 | WP_001579760.1 | hypothetical protein | - |
| PIC84_RS23825 (3447) | 3447..4064 | - | 618 | WP_000521604.1 | ProQ/FINO family protein | - |
| PIC84_RS23830 (4259) | 4259..5815 | - | 1557 | WP_001579759.1 | AAA family ATPase | - |
| PIC84_RS23835 (6080) | 6080..6670 | - | 591 | WP_000194568.1 | hypothetical protein | - |
| PIC84_RS23840 (6670) | 6670..6927 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| PIC84_RS23845 (7256) | 7256..8359 | + | 1104 | WP_001127573.1 | nucleotide-binding protein | - |
| PIC84_RS23850 (8389) | 8389..9549 | + | 1161 | WP_064148452.1 | DUF4238 domain-containing protein | - |
| PIC84_RS23855 (9561) | 9561..10265 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| PIC84_RS23860 (10552) | 10552..11565 | - | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| PIC84_RS23865 (11723) | 11723..12196 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| PIC84_RS23870 (12327) | 12327..12485 | + | 159 | Protein_12 | nucleotidyltransferase domain-containing protein | - |
| PIC84_RS23875 (12537) | 12537..13241 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| PIC84_RS23880 (13833) | 13833..14417 | - | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| PIC84_RS23885 (14417) | 14417..15655 | - | 1239 | WP_064986949.1 | macrolide resistance MFS transporter Mrx(A) | - |
| PIC84_RS23890 (15652) | 15652..16557 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| PIC84_RS23895 (16679) | 16679..17383 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| PIC84_RS23900 (17420) | 17420..18547 | - | 1128 | WP_272756115.1 | DUF3883 domain-containing protein | - |
| PIC84_RS23905 (18598) | 18598..18825 | - | 228 | WP_000248278.1 | hypothetical protein | - |
| PIC84_RS23910 (18849) | 18849..19040 | + | 192 | WP_000951934.1 | hypothetical protein | - |
| PIC84_RS23915 (19522) | 19522..20064 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| PIC84_RS23920 (20077) | 20077..20937 | - | 861 | WP_000557454.1 | SPbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| PIC84_RS23925 (21080) | 21080..22042 | + | 963 | Protein_23 | IS4 family transposase IS10R | Transposase |
| PIC84_RS23930 (22152) | 22152..23057 | + | 906 | Protein_24 | IS4 family transposase IS10R | Transposase |
| PIC84_RS23935 (23106) | 23106..23810 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| PIC84_RS23940 (24044) | 24044..24394 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| PIC84_RS23945 (24597) | 24597..25610 | - | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| PIC84_RS23950 (25759) | 25759..26597 | + | 839 | Protein_28 | Streptomycin 3''-adenylyltransferase | ARG |
| PIC84_RS23960 (27672) | 27672..27944 | - | 273 | Protein_30 | IS1 family transposase | - |
| PIC84_RS23965 (28038) | 28038..29471 | + | 1434 | WP_001288435.1 | DNA cytosine methyltransferase | - |
| PIC84_RS23970 (29505) | 29505..30719 | - | 1215 | WP_001532073.1 | type II site-specific deoxyribonuclease | - |
| PIC84_RS23975 (30958) | 30958..31062 | + | 105 | Protein_33 | recombinase family protein | - |
| PIC84_RS23980 (31116) | 31116..31820 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| PIC84_RS23985 (31884) | 31884..32156 | - | 273 | Protein_35 | IS6 family transposase | - |
| PIC84_RS23990 (32392) | 32392..32733 | - | 342 | WP_023909256.1 | chaperonin | - |
| PIC84_RS23995 (32694) | 32694..33143 | - | 450 | WP_013362817.1 | hypothetical protein | - |
| PIC84_RS24000 (33773) | 33773..34510 | - | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| PIC84_RS24005 (34636) | 34636..34731 | - | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| PIC84_RS24010 (34866) | 34866..35570 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| PIC84_RS24015 (35626) | 35626..35736 | + | 111 | Protein_41 | korC | - |
| PIC84_RS24020 (36255) | 36255..37388 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| PIC84_RS24025 (37408) | 37408..37692 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| PIC84_RS24030 (37863) | 37863..38510 | - | 648 | WP_000074712.1 | hypothetical protein | - |
| PIC84_RS24035 (38498) | 38498..38920 | - | 423 | WP_001372177.1 | hypothetical protein | - |
| PIC84_RS24040 (39013) | 39013..39594 | - | 582 | WP_000139427.1 | hypothetical protein | - |
| PIC84_RS24045 (40164) | 40164..40514 | + | 351 | WP_000493380.1 | hypothetical protein | - |
| PIC84_RS24050 (40584) | 40584..41192 | + | 609 | WP_063074920.1 | hypothetical protein | - |
| PIC84_RS24055 (41260) | 41260..42042 | + | 783 | WP_001372173.1 | site-specific integrase | - |
| PIC84_RS24060 (42180) | 42180..42455 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| PIC84_RS24065 (42449) | 42449..43093 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| PIC84_RS24070 (43322) | 43322..44293 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| PIC84_RS24075 (44298) | 44298..44690 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| PIC84_RS24080 (44695) | 44695..45966 | - | 1272 | WP_000457523.1 | Y-family DNA polymerase | - |
| PIC84_RS24085 (45966) | 45966..46403 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PIC84_RS24090 (46400) | 46400..46648 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PIC84_RS24095 (47066) | 47066..47968 | + | 903 | WP_072748701.1 | DUF1281 domain-containing protein | - |
| PIC84_RS24100 (47965) | 47965..48276 | + | 312 | WP_032072582.1 | hypothetical protein | - |
| PIC84_RS24105 (48353) | 48353..49036 | + | 684 | WP_000086147.1 | DNA methylase | - |
| PIC84_RS24110 (49037) | 49037..49258 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| PIC84_RS24115 (49272) | 49272..49706 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| PIC84_RS24120 (49752) | 49752..50528 | + | 777 | WP_001005023.1 | hypothetical protein | - |
| PIC84_RS24125 (50940) | 50940..51365 | + | 426 | WP_001579750.1 | antirestriction protein | - |
| PIC84_RS24130 (51412) | 51412..51834 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| PIC84_RS24135 (51831) | 51831..52022 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| PIC84_RS24140 (52093) | 52093..52407 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| PIC84_RS24145 (52791) | 52791..53318 | + | 528 | WP_001276107.1 | single-stranded DNA-binding protein | - |
| PIC84_RS24150 (53376) | 53376..53609 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| PIC84_RS24155 (53668) | 53668..55626 | + | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| PIC84_RS24160 (55681) | 55681..56115 | + | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| PIC84_RS24165 (56112) | 56112..56831 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| PIC84_RS24170 (56828) | 56828..57424 | + | 597 | Protein_72 | hypothetical protein | - |
| PIC84_RS24175 (57886) | 57886..58386 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| PIC84_RS24180 (59115) | 59115..59549 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| PIC84_RS24185 (59643) | 59643..59909 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| PIC84_RS24190 (59974) | 59974..60900 | + | 927 | WP_000038402.1 | ISNCY family transposase ISRor2 | VF |
| PIC84_RS24195 (60923) | 60923..61120 | + | 198 | WP_001348086.1 | hypothetical protein | - |
| PIC84_RS24200 (61151) | 61151..61402 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| PIC84_RS24205 (61982) | 61982..62830 | + | 849 | WP_001077023.1 | DUF4942 domain-containing protein | - |
| PIC84_RS24210 (62916) | 62916..63251 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| PIC84_RS24215 (63485) | 63485..63817 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| PIC84_RS24220 (63828) | 63828..66527 | + | 2700 | WP_001405892.1 | hypothetical protein | Relaxase |
| PIC84_RS24225 (66564) | 66564..68855 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| PIC84_RS24230 (68848) | 68848..69918 | - | 1071 | WP_000151582.1 | IncI1-type conjugal transfer protein TrbB | - |
| PIC84_RS24235 (69937) | 69937..71145 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (71325) | 71325..71385 | - | 61 | NuclAT_1 | - | - |
| - (71325) | 71325..71385 | - | 61 | NuclAT_1 | - | - |
| - (71325) | 71325..71385 | - | 61 | NuclAT_1 | - | - |
| - (71325) | 71325..71385 | - | 61 | NuclAT_1 | - | - |
| PIC84_RS24240 (71452) | 71452..72537 | - | 1086 | WP_000080543.1 | protein finQ | - |
| - (72746) | 72746..72808 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (72746) | 72746..72808 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (72746) | 72746..72808 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (72746) | 72746..72808 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| PIC84_RS24245 (72858) | 72858..73010 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| PIC84_RS24250 (73082) | 73082..73333 | - | 252 | WP_001291968.1 | hypothetical protein | - |
| - (73720) | 73720..73771 | - | 52 | NuclAT_2 | - | - |
| - (73720) | 73720..73771 | - | 52 | NuclAT_2 | - | - |
| - (73720) | 73720..73771 | - | 52 | NuclAT_2 | - | - |
| - (73720) | 73720..73771 | - | 52 | NuclAT_2 | - | - |
| PIC84_RS24255 (74257) | 74257..74433 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| PIC84_RS24260 (74642) | 74642..74851 | - | 210 | WP_001140545.1 | hemolysin expression modulator Hha | - |
| PIC84_RS24265 (74949) | 74949..75563 | - | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PIC84_RS24270 (75639) | 75639..77807 | - | 2169 | WP_000698360.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| PIC84_RS24275 (77904) | 77904..78488 | - | 585 | WP_001579774.1 | IncI1-type conjugal transfer protein TraX | - |
| PIC84_RS24280 (78517) | 78517..79719 | - | 1203 | WP_001189159.1 | IncI1-type conjugal transfer protein TraW | - |
| PIC84_RS24285 (79686) | 79686..80300 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| PIC84_RS24290 (80300) | 80300..83344 | - | 3045 | WP_001024752.1 | IncI1-type conjugal transfer protein TraU | - |
| PIC84_RS24295 (83434) | 83434..84234 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| PIC84_RS24300 (84218) | 84218..84406 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| PIC84_RS24305 (84470) | 84470..84874 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| PIC84_RS24310 (84925) | 84925..85452 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| PIC84_RS24315 (85452) | 85452..86156 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| PIC84_RS24320 (86156) | 86156..87445 | - | 1290 | WP_063074922.1 | conjugal transfer protein TraO | - |
| PIC84_RS24325 (87448) | 87448..88431 | - | 984 | WP_001191878.1 | hypothetical protein | VF |
| PIC84_RS24330 (88442) | 88442..89134 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| PIC84_RS24335 (89131) | 89131..89478 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| PIC84_RS24340 (89496) | 89496..93263 | - | 3768 | WP_001579768.1 | DUF5710 domain-containing protein | - |
| PIC84_RS24345 (93353) | 93353..93904 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| PIC84_RS24350 (93919) | 93919..94209 | - | 291 | WP_001372180.1 | hypothetical protein | - |
| PIC84_RS24355 (94206) | 94206..95354 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| PIC84_RS24360 (95351) | 95351..96169 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| PIC84_RS24365 (96166) | 96166..96624 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| PIC84_RS24370 (97019) | 97019..97603 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| PIC84_RS24375 (97663) | 97663..98865 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| PIC84_RS24380 (98951) | 98951..99775 | - | 825 | WP_001238929.1 | conjugal transfer protein TraE | - |
| PIC84_RS24385 (99926) | 99926..101080 | - | 1155 | WP_001139958.1 | site-specific integrase | - |
| PIC84_RS24390 (102846) | 102846..104138 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| PIC84_RS24395 (104138) | 104138..104794 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| PIC84_RS24400 (104779) | 104779..105339 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| PIC84_RS24405 (105349) | 105349..105963 | - | 615 | WP_000959786.1 | hypothetical protein | VF |
| PIC84_RS24410 (105981) | 105981..107078 | - | 1098 | WP_001208805.1 | hypothetical protein | VF |
| PIC84_RS24415 (107091) | 107091..108644 | - | 1554 | WP_000362202.1 | hypothetical protein | VF |
| PIC84_RS24420 (108655) | 108655..109107 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| PIC84_RS24425 (109094) | 109094..110389 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| PIC84_RS24430 (110382) | 110382..112064 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| PIC84_RS24435 (112078) | 112078..112515 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| PIC84_RS24440 (112515) | 112515..113582 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| PIC84_RS24445 (114206) | 114206..114502 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| PIC84_RS24450 (114678) | 114678..114932 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| PIC84_RS24455 (115094) | 115094..115645 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| PIC84_RS24460 (115818) | 115818..116501 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| PIC84_RS24465 (116755) | 116755..117288 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| PIC84_RS24470 (117730) | 117730..118017 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| PIC84_RS24475 (118055) | 118055..118213 | - | 159 | Protein_133 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|