MGE detailed information
MGE type: Conjugative plasmid MGE length: 118588 bp
Accession: NZ_CP116109 Location: 1..118588 Organism: Escherichia coli strain DETEC-P829 Replicon: plasmid pDETEC67
Accession: NZ_CP116109 Location: 1..118588 Organism: Escherichia coli strain DETEC-P829 Replicon: plasmid pDETEC67
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC05_RS25940 (455) | 455..1486 | + | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| PIC05_RS25945 (2395) | 2395..3351 | + | 957 | WP_001535695.1 | hypothetical protein | - |
| PIC05_RS25950 (3263) | 3263..6229 | - | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| PIC05_RS25955 (6315) | 6315..7019 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PIC05_RS25960 (7072) | 7072..7869 | + | 798 | Protein_4 | Tn3 family transposase TnpA_IS3000 | Transposase |
| PIC05_RS25965 (7971) | 7971..8432 | + | 462 | WP_198478452.1 | DMT family transporter | - |
| PIC05_RS25970 (8434) | 8434..8607 | + | 174 | Protein_6 | IS6 family transposase | - |
| PIC05_RS25975 (8747) | 8747..8812 | - | 66 | Protein_7 | EAL domain-containing protein | - |
| PIC05_RS25980 (8827) | 8827..9174 | - | 348 | WP_038988888.1 | hypothetical protein | - |
| PIC05_RS25985 (9171) | 9171..9320 | - | 150 | WP_160177685.1 | hypothetical protein | - |
| PIC05_RS25990 (9399) | 9399..10514 | - | 1116 | WP_271292890.1 | hypothetical protein | - |
| PIC05_RS25995 (10539) | 10539..11243 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| PIC05_RS26000 (11395) | 11395..11940 | + | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| PIC05_RS26005 (12077) | 12077..12649 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| PIC05_RS26010 (12686) | 12686..14077 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| PIC05_RS26015 (14110) | 14110..14538 | + | 429 | Protein_15 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| PIC05_RS26020 (14857) | 14857..15513 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| PIC05_RS26025 (15908) | 15908..16923 | + | 1016 | Protein_17 | IS3 family transposase ISEc36 | Transposase |
| PIC05_RS26030 (16966) | 16966..17556 | - | 591 | Protein_18 | Tn3 family transposase TnpA_Tn3 | Transposase |
| PIC05_RS26035 (17620) | 17620..18324 | + | 705 | WP_001067855.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| PIC05_RS26040 (18330) | 18330..18470 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| PIC05_RS26045 (18956) | 18956..19693 | + | 738 | WP_001446887.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PIC05_RS26050 (19690) | 19690..19914 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| PIC05_RS26055 (20125) | 20125..21618 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| PIC05_RS26060 (21649) | 21649..22533 | + | 885 | WP_104213629.1 | DUF3363 domain-containing protein | - |
| PIC05_RS26065 (22750) | 22750..23964 | + | 1215 | WP_124829201.1 | Bicyclomycin resistance protein | ARG |
| PIC05_RS26070 (23992) | 23992..24297 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| PIC05_RS26075 (24409) | 24409..24597 | + | 189 | Protein_27 | IS91 family transposase | - |
| PIC05_RS26080 (24564) | 24564..25763 | - | 1200 | WP_000804063.1 | Tetracycline resistance protein, class C | ARG |
| PIC05_RS26085 (25869) | 25869..26519 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| PIC05_RS26090 (26551) | 26551..26793 | - | 243 | WP_000844627.1 | transposase | - |
| PIC05_RS26095 (27099) | 27099..27935 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| PIC05_RS26100 (27935) | 27935..28738 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PIC05_RS26105 (28799) | 28799..29614 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| PIC05_RS26110 (29944) | 29944..30030 | + | 87 | Protein_34 | Arm DNA-binding domain-containing protein | - |
| PIC05_RS26115 (30302) | 30302..31057 | - | 756 | Protein_35 | IS110 family transposase IS5075 | Transposase |
| PIC05_RS26120 (31110) | 31110..31814 | - | 705 | WP_001067855.1 | hypothetical protein | VF |
| PIC05_RS26125 (31839) | 31839..33395 | + | 1557 | WP_053897648.1 | hypothetical protein | VF |
| PIC05_RS26130 (33806) | 33806..34423 | - | 618 | WP_001535718.1 | ProQ/FINO family protein | - |
| PIC05_RS26135 (34618) | 34618..36174 | - | 1557 | WP_000818359.1 | AAA family ATPase | - |
| PIC05_RS26140 (36439) | 36439..37029 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| PIC05_RS26145 (37029) | 37029..37286 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| PIC05_RS26150 (37615) | 37615..38718 | + | 1104 | WP_001127573.1 | nucleotide-binding protein | - |
| PIC05_RS26155 (38748) | 38748..39878 | + | 1131 | WP_000542418.1 | DUF4238 domain-containing protein | - |
| PIC05_RS26160 (39878) | 39878..40168 | + | 291 | WP_001535717.1 | hypothetical protein | - |
| PIC05_RS26165 (40968) | 40968..41381 | + | 414 | WP_001535716.1 | hypothetical protein | - |
| PIC05_RS26170 (41383) | 41383..42162 | + | 780 | WP_001535715.1 | site-specific integrase | - |
| PIC05_RS26175 (42342) | 42342..42986 | + | 645 | WP_001144036.1 | ParA family protein | - |
| PIC05_RS26180 (43073) | 43073..43381 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| PIC05_RS26185 (43794) | 43794..44774 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| PIC05_RS26190 (44767) | 44767..45183 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| PIC05_RS26195 (45185) | 45185..46448 | - | 1264 | Protein_51 | translesion error-prone DNA polymerase V subunit UmuC | - |
| PIC05_RS26200 (46448) | 46448..46885 | - | 438 | WP_000109072.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PIC05_RS26205 (46882) | 46882..47130 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| PIC05_RS26210 (47548) | 47548..48450 | + | 903 | WP_000273912.1 | DUF1281 domain-containing protein | - |
| PIC05_RS26215 (48447) | 48447..48758 | + | 312 | WP_014640311.1 | hypothetical protein | - |
| PIC05_RS26220 (48834) | 48834..49517 | + | 684 | WP_000086148.1 | DNA methylase | - |
| PIC05_RS26225 (49518) | 49518..49739 | + | 222 | WP_001104893.1 | hypothetical protein | - |
| PIC05_RS26230 (49669) | 49669..50187 | + | 519 | WP_224732897.1 | DUF1380 family protein | - |
| PIC05_RS26235 (50238) | 50238..51014 | + | 777 | WP_024135924.1 | hypothetical protein | - |
| PIC05_RS26240 (51432) | 51432..51857 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| PIC05_RS26245 (51904) | 51904..52326 | + | 423 | WP_001535711.1 | DUF1380 family protein | - |
| PIC05_RS26250 (52323) | 52323..52514 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| PIC05_RS26255 (52848) | 52848..52916 | - | 69 | Protein_63 | pilus protein | - |
| PIC05_RS26260 (53285) | 53285..53812 | + | 528 | WP_001276114.1 | single-stranded DNA-binding protein | - |
| PIC05_RS26265 (53870) | 53870..54103 | + | 234 | WP_000006012.1 | DUF905 family protein | - |
| PIC05_RS26270 (54162) | 54162..56120 | + | 1959 | WP_023231917.1 | ParB/RepB/Spo0J family partition protein | - |
| PIC05_RS26275 (56175) | 56175..56609 | + | 435 | WP_001535709.1 | conjugation system SOS inhibitor PsiB | - |
| PIC05_RS26280 (56606) | 56606..57325 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| PIC05_RS26285 (57322) | 57322..57918 | + | 597 | WP_001535708.1 | hypothetical protein | - |
| PIC05_RS26290 (58381) | 58381..58881 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| PIC05_RS26295 (59610) | 59610..60044 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| PIC05_RS26300 (60136) | 60136..60402 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| PIC05_RS26305 (60467) | 60467..61417 | + | 951 | WP_089477347.1 | ISNCY family transposase ISRor2 | VF |
| PIC05_RS26310 (61417) | 61417..61662 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| PIC05_RS26315 (61693) | 61693..61944 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| PIC05_RS26320 (62524) | 62524..63372 | + | 849 | WP_001077033.1 | DUF4942 domain-containing protein | - |
| PIC05_RS26325 (63458) | 63458..63793 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| PIC05_RS26330 (64027) | 64027..64359 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| PIC05_RS26335 (64370) | 64370..67072 | + | 2703 | WP_001493820.1 | hypothetical protein | Relaxase |
| PIC05_RS26340 (67195) | 67195..68013 | + | 819 | WP_000106196.1 | DUF2971 domain-containing protein | - |
| PIC05_RS26345 (68086) | 68086..70377 | - | 2292 | WP_001289272.1 | F-type conjugative transfer protein TrbC | - |
| PIC05_RS26350 (70370) | 70370..71440 | - | 1071 | WP_001535705.1 | IncI1-type conjugal transfer protein TrbB | - |
| PIC05_RS26355 (71459) | 71459..72667 | - | 1209 | WP_001535704.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (72847) | 72847..72904 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (72847) | 72847..72904 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (72847) | 72847..72904 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (72847) | 72847..72904 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| PIC05_RS26360 (72959) | 72959..73111 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| PIC05_RS26365 (73183) | 73183..73434 | - | 252 | WP_001535703.1 | hypothetical protein | - |
| PIC05_RS26370 (73935) | 73935..74030 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| PIC05_RS26375 (74095) | 74095..74271 | - | 177 | WP_271292889.1 | hypothetical protein | - |
| PIC05_RS26380 (74480) | 74480..74689 | - | 210 | WP_001140545.1 | hemolysin expression modulator Hha | - |
| PIC05_RS26385 (74787) | 74787..75401 | - | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PIC05_RS26390 (75477) | 75477..77645 | - | 2169 | WP_000698360.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| PIC05_RS26395 (77742) | 77742..78326 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| PIC05_RS26400 (78355) | 78355..79557 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| PIC05_RS26405 (79524) | 79524..80138 | - | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| PIC05_RS26410 (80138) | 80138..83182 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| PIC05_RS26415 (83272) | 83272..84072 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| PIC05_RS26420 (84056) | 84056..84244 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| PIC05_RS26425 (84308) | 84308..84712 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| PIC05_RS26430 (84763) | 84763..85290 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| PIC05_RS26435 (85290) | 85290..85994 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| PIC05_RS26440 (85994) | 85994..87283 | - | 1290 | WP_001535701.1 | conjugal transfer protein TraO | - |
| PIC05_RS26445 (87286) | 87286..88269 | - | 984 | WP_001191878.1 | hypothetical protein | VF |
| PIC05_RS26450 (88280) | 88280..88972 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| PIC05_RS26455 (88969) | 88969..89316 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| PIC05_RS26460 (89334) | 89334..93101 | - | 3768 | WP_268201728.1 | DUF5710 domain-containing protein | - |
| PIC05_RS26465 (93191) | 93191..93742 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| PIC05_RS26470 (93757) | 93757..94047 | - | 291 | WP_001372180.1 | hypothetical protein | - |
| PIC05_RS26475 (94044) | 94044..95192 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| PIC05_RS26480 (95189) | 95189..96007 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| PIC05_RS26485 (96004) | 96004..96462 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| PIC05_RS26490 (96857) | 96857..97441 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| PIC05_RS26495 (97501) | 97501..98703 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| PIC05_RS26500 (98788) | 98788..99612 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| PIC05_RS26505 (99763) | 99763..100917 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| PIC05_RS26510 (102438) | 102438..102686 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| PIC05_RS26515 (102683) | 102683..103975 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| PIC05_RS26520 (103975) | 103975..104631 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| PIC05_RS26525 (104616) | 104616..105176 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| PIC05_RS26530 (105186) | 105186..105800 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| PIC05_RS26535 (105818) | 105818..106915 | - | 1098 | WP_001208805.1 | hypothetical protein | VF |
| PIC05_RS26540 (106928) | 106928..108481 | - | 1554 | WP_000362202.1 | hypothetical protein | VF |
| PIC05_RS26545 (108492) | 108492..108944 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| PIC05_RS26550 (108931) | 108931..110226 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| PIC05_RS26555 (110219) | 110219..111901 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| PIC05_RS26560 (111915) | 111915..112352 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| PIC05_RS26565 (112352) | 112352..113419 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| PIC05_RS26570 (114093) | 114093..114545 | - | 453 | WP_001535696.1 | hypothetical protein | - |
| PIC05_RS26575 (114588) | 114588..114842 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| PIC05_RS26580 (115110) | 115110..115676 | - | 567 | WP_000776428.1 | protein TraD | - |
| PIC05_RS26585 (115690) | 115690..116373 | - | 684 | WP_268201722.1 | conjugal transfer protein TraC | - |
| PIC05_RS26590 (116627) | 116627..117160 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| PIC05_RS26595 (117602) | 117602..117889 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| PIC05_RS26600 (117807) | 117807..118037 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|